HHsearch alignment for GI: 254781053 and conserved domain: TIGR01350

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.90  E-value=6.1e-05  Score=54.45  Aligned_cols=136  Identities=24%  Similarity=0.385  Sum_probs=76.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH
Q ss_conf             99998986689999999987993999937997150251366737098999999999999866755816477532899999
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM   84 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~   84 (466)
T Consensus       181 lvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI---------Lp--------------------------~~D~evSk~~  225 (481)
T TIGR01350       181 LVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI---------LP--------------------------GEDAEVSKVV  225 (481)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------CC--------------------------CCCHHHHHHH
T ss_conf             699878667788999998539808999457500---------35--------------------------4316899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC-EEEEEEEE-E----ECCCCCCC--CCCCCC--CCCCCCEEECCCCCCCCCCCCCCC-
Q ss_conf             9999999987777787640043-10110011-1----00222102--357521--123221000046766524445766-
Q gi|254781053|r   85 SYKKSIVESNTQGINFLLKKNK-IITYHGSA-R----IVSNNKIL--VKGSSS--EETIEAKNIVIATGSEASGLPGMS-  153 (466)
Q Consensus        85 ~~~~~~v~~~~~~~~~~~~~~~-V~~~~g~a-~----~~~~~~v~--V~~~~~--~~~i~ad~iviATGs~p~~iP~~~-  153 (466)
T Consensus       226 --------------~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn-~~~~GL  290 (481)
T TIGR01350       226 --------------KKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPN-TEGLGL  290 (481)
T ss_pred             --------------HHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCC-CCCCCE
T ss_conf             --------------99997449849854854423357752878999999879980588987399998424347-676460


Q ss_pred             ----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             ----532100245305741111113332101234454332013
Q gi|254781053|r  154 ----IDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSV  192 (466)
Q Consensus       154 ----~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~  192 (466)
T Consensus       291 e~~Gv~~~~rG~i~vd~~~~-Tnv~-~IYAIGDv~gg~mLAH~  331 (481)
T TIGR01350       291 EKLGVKLDERGRIVVDEYMR-TNVP-GIYAIGDVIGGPMLAHV  331 (481)
T ss_pred             EEEEEEECCCCEEEECCEEE-ECCC-CEEEEEECCCCCHHHHH
T ss_conf             21211887898188798325-1689-66688734787026899