HHsearch alignment for GI: 254781053 and conserved domain: TIGR01373
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.40 E-value=0.00023 Score=50.30 Aligned_cols=80 Identities=35% Similarity=0.397 Sum_probs=47.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHH-CCC-CEEEEECCCCCCEE-EEEECCCCHHHHHH-HHHHHHHHHHHHHHCCEECCCCC
Q ss_conf 3319999898668999999998-799-39999379971502-51366737098999-99999999986675581647753
Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQ-LKN-KVAIIEKEKTYGGT-CLNIGCIPSKALLH-ASEMYSHIAKEAGDLGINIASCH 77 (466)
Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~-~G~-~V~lIE~~~~~GGt-C~~~GCiPsK~l~~-~a~~~~~~~~~~~~~g~~~~~~~ 77 (466)
T Consensus 30 ~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kL-----weGLs~d 104 (407)
T TIGR01373 30 EYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKL-----WEGLSQD 104 (407)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH-----HHCHHHH
T ss_conf 54678886886068999998864694068998506216886643421465410264522378889888-----6120012
Q ss_pred CCHHHHHHH
Q ss_conf 289999999
Q gi|254781053|r 78 LDLKKMMSY 86 (466)
Q Consensus 78 ~d~~~~~~~ 86 (466)
T Consensus 105 LNYNvM~Sq 113 (407)
T TIGR01373 105 LNYNVMFSQ 113 (407)
T ss_pred CCHHHHHHH
T ss_conf 020011213