HHsearch alignment for GI: 254781053 and conserved domain: TIGR01813
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=98.99 E-value=3.4e-09 Score=85.48 Aligned_cols=37 Identities=41% Similarity=0.622 Sum_probs=36.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCEE
Q ss_conf 1999989866899999999879-939999379971502
Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYGGT 40 (466)
Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~GGt 40 (466)
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGN 38 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGN 38 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 96898427688999999986468763787057523226