HHsearch alignment for GI: 254781053 and conserved domain: TIGR01984
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=93.92 E-value=0.015 Score=37.13 Aligned_cols=187 Identities=18% Similarity=0.284 Sum_probs=91.2
Q ss_pred CCCCCCCCCCCCC-CCCCCCCHHHHHHHCCCCC--------------CEEEE-EEECCCCCCCEEEEEEECCC-----CE
Q ss_conf 2112222222222-2223220023442014687--------------21699-97213321100000232045-----31
Q gi|254781053|r 216 EIAAHCLKIMSKQ-GMNFQLNSKVSSVKKVKGK--------------AQVVY-RSTDDEPINIEADAVLVAAG-----RR 274 (466)
Q Consensus 216 ~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~--------------~~v~~-~~~~g~~~~i~~D~vl~a~G-----~~ 274 (466)
T Consensus 119 ~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGGlfdd~~ 198 (425)
T TIGR01984 119 DLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGGLFDDAN 198 (425)
T ss_pred HHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHH
T ss_conf 99999999986256651125753211210578630005666655103578883088756405553088985586331356
Q ss_pred EEECCCCCEEEECCCCCCCCCCCC-CCCEEEC-CCCEEECCCCCCCCCCCEECCCCCCEEECCC-CCCCCC--CCCC--C
Q ss_conf 210367840000126764223337-7633302-6848702433354344300012320120111-222222--2333--3
Q gi|254781053|r 275 PYTKGLGLEEIGINIDHRGCIEIG-GQFQTSI-STIYAIGDVVRGPMLAHKAEDEGIAVAEIIS-GQKGHV--NYGI--I 347 (466)
Q Consensus 275 Pn~~~l~Le~~gi~~~~~G~I~vd-~~~~Ts~-p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~-~~~~~~--~~~~--i 347 (466)
T Consensus 199 S~~r----~~~~i~------~~~~R~y~QtAlian~~------------~~~pH~~-~A~ERFt~~GPlALLP~~d~q~~ 255 (425)
T TIGR01984 199 SKVR----ELLSIA------TEEHRDYEQTALIANVR------------VEQPHQG-CAFERFTPHGPLALLPLKDNQYR 255 (425)
T ss_pred HHHH----HHCCCC------EEEECCCCEEEEEEECC------------CCCCCCC-CEEEEECCCCCEEECCCCCCCCC
T ss_conf 7889----963898------17860620033012310------------0357576-06844477778023467899972
Q ss_pred CCCEEEHH-HHHH--HHHCHHHH-HH---CCCCEEEEEEEECCCCHHHHCCCCCEE-EEEEEECC--CCEEEEEEEECCC
Q ss_conf 22100014-4551--00147888-62---346658999960447034418898338-99999789--9869999998299
Q gi|254781053|r 348 PSVVYTHP-EVAS--IGKTEEQL-KC---EKKSYKVGKFPFSANGRARSMNSIDGF-VKILANEK--SDRVEGVHIIGGS 417 (466)
Q Consensus 348 p~~vft~p-eia~--vGlte~~a-~~---~~~~~~v~~~~~~~~~ra~~~~~~~g~-~kli~~~~--~~~ilG~~~vg~~ 417 (466)
T Consensus 256 ~slvWc~~~~~a~~~~~L~~~eFl~~Lq~~nFG~rlG~~--------~~~G~r~~yPL~l~~a~~~v~~R~---vliG-N 323 (425)
T TIGR01984 256 LSLVWCLPKEQAERLANLSDAEFLAELQQANFGWRLGKI--------TQVGERKAYPLKLVIAEEQVSHRV---VLIG-N 323 (425)
T ss_pred EEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--------HHCCCCCCCHHHHHHHHHCCCCCE---EEEE-C
T ss_conf 388971897899998668988999998651222542057--------432751004366786210146727---9986-5
Q ss_pred HHHHHHHHH-HHHHCCCCHHHHH
Q ss_conf 889999999-9998789878996
Q gi|254781053|r 418 AGEMIHEAA-VLMEFGGSSEDLA 439 (466)
Q Consensus 418 a~eli~~~a-~ai~~~~t~~~l~ 439 (466)
T Consensus 324 AAqTlHPIAGQGf--NLGlRDv~ 344 (425)
T TIGR01984 324 AAQTLHPIAGQGF--NLGLRDVL 344 (425)
T ss_pred CHHHHCCHHHHCC--CCHHHHHH
T ss_conf 1333301455301--63289999