HHsearch alignment for GI: 254781053 and conserved domain: TIGR01984

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=93.92  E-value=0.015  Score=37.13  Aligned_cols=187  Identities=18%  Similarity=0.284  Sum_probs=91.2

Q ss_pred             CCCCCCCCCCCCC-CCCCCCCHHHHHHHCCCCC--------------CEEEE-EEECCCCCCCEEEEEEECCC-----CE
Q ss_conf             2112222222222-2223220023442014687--------------21699-97213321100000232045-----31
Q gi|254781053|r  216 EIAAHCLKIMSKQ-GMNFQLNSKVSSVKKVKGK--------------AQVVY-RSTDDEPINIEADAVLVAAG-----RR  274 (466)
Q Consensus       216 ~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~--------------~~v~~-~~~~g~~~~i~~D~vl~a~G-----~~  274 (466)
T Consensus       119 ~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGGlfdd~~  198 (425)
T TIGR01984       119 DLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGGLFDDAN  198 (425)
T ss_pred             HHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHH
T ss_conf             99999999986256651125753211210578630005666655103578883088756405553088985586331356


Q ss_pred             EEECCCCCEEEECCCCCCCCCCCC-CCCEEEC-CCCEEECCCCCCCCCCCEECCCCCCEEECCC-CCCCCC--CCCC--C
Q ss_conf             210367840000126764223337-7633302-6848702433354344300012320120111-222222--2333--3
Q gi|254781053|r  275 PYTKGLGLEEIGINIDHRGCIEIG-GQFQTSI-STIYAIGDVVRGPMLAHKAEDEGIAVAEIIS-GQKGHV--NYGI--I  347 (466)
Q Consensus       275 Pn~~~l~Le~~gi~~~~~G~I~vd-~~~~Ts~-p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~-~~~~~~--~~~~--i  347 (466)
T Consensus       199 S~~r----~~~~i~------~~~~R~y~QtAlian~~------------~~~pH~~-~A~ERFt~~GPlALLP~~d~q~~  255 (425)
T TIGR01984       199 SKVR----ELLSIA------TEEHRDYEQTALIANVR------------VEQPHQG-CAFERFTPHGPLALLPLKDNQYR  255 (425)
T ss_pred             HHHH----HHCCCC------EEEECCCCEEEEEEECC------------CCCCCCC-CEEEEECCCCCEEECCCCCCCCC
T ss_conf             7889----963898------17860620033012310------------0357576-06844477778023467899972


Q ss_pred             CCCEEEHH-HHHH--HHHCHHHH-HH---CCCCEEEEEEEECCCCHHHHCCCCCEE-EEEEEECC--CCEEEEEEEECCC
Q ss_conf             22100014-4551--00147888-62---346658999960447034418898338-99999789--9869999998299
Q gi|254781053|r  348 PSVVYTHP-EVAS--IGKTEEQL-KC---EKKSYKVGKFPFSANGRARSMNSIDGF-VKILANEK--SDRVEGVHIIGGS  417 (466)
Q Consensus       348 p~~vft~p-eia~--vGlte~~a-~~---~~~~~~v~~~~~~~~~ra~~~~~~~g~-~kli~~~~--~~~ilG~~~vg~~  417 (466)
T Consensus       256 ~slvWc~~~~~a~~~~~L~~~eFl~~Lq~~nFG~rlG~~--------~~~G~r~~yPL~l~~a~~~v~~R~---vliG-N  323 (425)
T TIGR01984       256 LSLVWCLPKEQAERLANLSDAEFLAELQQANFGWRLGKI--------TQVGERKAYPLKLVIAEEQVSHRV---VLIG-N  323 (425)
T ss_pred             EEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--------HHCCCCCCCHHHHHHHHHCCCCCE---EEEE-C
T ss_conf             388971897899998668988999998651222542057--------432751004366786210146727---9986-5


Q ss_pred             HHHHHHHHH-HHHHCCCCHHHHH
Q ss_conf             889999999-9998789878996
Q gi|254781053|r  418 AGEMIHEAA-VLMEFGGSSEDLA  439 (466)
Q Consensus       418 a~eli~~~a-~ai~~~~t~~~l~  439 (466)
T Consensus       324 AAqTlHPIAGQGf--NLGlRDv~  344 (425)
T TIGR01984       324 AAQTLHPIAGQGF--NLGLRDVL  344 (425)
T ss_pred             CHHHHCCHHHHCC--CCHHHHHH
T ss_conf             1333301455301--63289999