HHsearch alignment for GI: 254781053 and conserved domain: TIGR02374
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.30 E-value=0.00066 Score=46.93 Aligned_cols=94 Identities=24% Similarity=0.352 Sum_probs=56.2
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHH
Q ss_conf 99989866899999999879939999379971502513667370989999999999998667558164775328999999
Q gi|254781053|r 6 AVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMMS 85 (466)
Q Consensus 6 vIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (466)
T Consensus 151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~L-----------------M~~QLD~~a-----------------G~l-- 194 (813)
T TIGR02374 151 AVIGGGLLGLEAARALKNLGMDVSVIELAPFL-----------------MAKQLDQTA-----------------GRL-- 194 (813)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH-----------------HHHHHHHHH-----------------HHH--
T ss_conf 58867415889999998779706446764898-----------------999999999-----------------999--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEE----EECCCC---C-CCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 99999998777778764004310110011----100222---1-023575211232210000467665244
Q gi|254781053|r 86 YKKSIVESNTQGINFLLKKNKIITYHGSA----RIVSNN---K-ILVKGSSSEETIEAKNIVIATGSEASG 148 (466)
Q Consensus 86 ~~~~~v~~~~~~~~~~~~~~~V~~~~g~a----~~~~~~---~-v~V~~~~~~~~i~ad~iviATGs~p~~ 148 (466)
T Consensus 195 ------------L~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~-~l~aDlvv~A~GirP~~ 252 (813)
T TIGR02374 195 ------------LQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGS-SLEADLVVFAAGIRPRD 252 (813)
T ss_pred ------------HHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCC-EEEECEEEEECCCCCCH
T ss_conf ------------99999857957986176110576415640123122423897-88703799951566636