HHsearch alignment for GI: 254781053 and conserved domain: TIGR02734
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=92.15 E-value=0.028 Score=35.10 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC---CCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHCCCC-----
Q ss_conf 2101234454332013220122011100001---1122122221122222222--22222322002344201468-----
Q gi|254781053|r 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSG---TILNGMDKEIAAHCLKIMS--KQGMNFQLNSKVSSVKKVKG----- 246 (466)
Q Consensus 177 ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~---~ll~~~d~~~~~~~~~~l~--~~gV~i~~~~~v~~i~~~~~----- 246 (466)
T Consensus 194 ~l~~Gg~P~-~~--S~Y~L----is~le~~~GV~fP~GG~-~al~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~ 265 (526)
T TIGR02734 194 ALFVGGNPF-TS--SIYAL----ISALEREWGVWFPRGGT-GALVAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVAT 265 (526)
T ss_pred CEECCCCCH-HH--HHHHH----HHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEE
T ss_conf 321069831-68--99999----98754426740156538-899999999997468746997455311446216742331
Q ss_pred -CCEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf -72169997213321100000232045
Q gi|254781053|r 247 -KAQVVYRSTDDEPINIEADAVLVAAG 272 (466)
Q Consensus 247 -~~~v~~~~~~g~~~~i~~D~vl~a~G 272 (466)
T Consensus 266 ~~~~~~v~--~~~~~~~~ad~VvSnAD 290 (526)
T TIGR02734 266 GGRATAVH--LADGERLDADAVVSNAD 290 (526)
T ss_pred CCEEEEEE--CCCCEEEEEEEEEECCC
T ss_conf 65243455--06540331127887487