HHsearch alignment for GI: 254781053 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.9e-42 Score=326.13 Aligned_cols=283 Identities=23% Similarity=0.316 Sum_probs=190.6
Q ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC---CCHHHHHHHHHHHHHHHHHHHHCCEECCC
Q ss_conf 93--31999989866899999999879939999379971502513667---37098999999999999866755816477
Q gi|254781053|r 1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGC---IPSKALLHASEMYSHIAKEAGDLGINIAS 75 (466)
Q Consensus 1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GC---iPsK~l~~~a~~~~~~~~~~~~~g~~~~~ 75 (466)
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~-~GGqi~~t~~VeNYPG~~~isG~eL~~~m~~qA~~~------ 73 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDF------ 73 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHC------
T ss_conf 9844729999956889999999997899679996688-686556368568788877986899999999999977------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CC
Q ss_conf 532899999999999998777778764004310110011100--22210235752112322100004676652444--57
Q gi|254781053|r 76 CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIV--SNNKILVKGSSSEETIEAKNIVIATGSEASGL--PG 151 (466)
Q Consensus 76 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P~ 151 (466)
T Consensus 74 ------------------------------Gve~~~~~V~~i~~~g~~k~V~t~~--g~~~ak~VIIATGa~pr~LgipG 121 (555)
T TIGR03143 74 ------------------------------GVKFLQAEVLDVDFDGDIKTIKTAR--GDYKTLAVLIATGASPRKLGFPG 121 (555)
T ss_pred ------------------------------CCEEEEEEEEEEECCCCCEEEEECC--CEEEECEEEECCCCCCCCCCCCC
T ss_conf ------------------------------9699965699997379958999889--78996979999999714389997
Q ss_pred CCC-CCCCEEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 665-32100245-30574111111333210123445433201322012201110000111221222211222222-2222
Q gi|254781053|r 152 MSI-DFDEQVIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKI-MSKQ 228 (466)
Q Consensus 152 ~~~-~~~~~~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~-l~~~ 228 (466)
T Consensus 122 E~ef~GrGVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~a------~~~~~e~~~~~~ 192 (555)
T TIGR03143 122 EEEFTGRGVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC------AKLIAEKVKNHP 192 (555)
T ss_pred HHHCCCCCEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCC------CHHHHHHHHHCC
T ss_conf 32216871377403763241---798699983888999999999974890899997875685------899999998579
Q ss_pred CCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEE------EEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 222322002344201468721699972-133211000------0023204531210367840000126764223337763
Q gi|254781053|r 229 GMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEA------DAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301 (466)
Q Consensus 229 gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~------D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~ 301 (466)
T Consensus 193 kI~v~~nt~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~GyI~tDe~m 269 (555)
T TIGR03143 193 KIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKRGYIPTNEDM 269 (555)
T ss_pred CEEEEECCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCCCEEEECCCC
T ss_conf 859997888999986785489999998889789960465667628999979965415---66073258889719739997
Q ss_pred EEECCCCEEECCCCCCC-CCCCEECCCCCCEEEC
Q ss_conf 33026848702433354-3443000123201201
Q gi|254781053|r 302 QTSISTIYAIGDVVRGP-MLAHKAEDEGIAVAEI 334 (466)
Q Consensus 302 ~Ts~p~IyA~GDv~g~~-~l~~~A~~~g~~aa~~ 334 (466)
T Consensus 270 ~TnVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~ 303 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKELRQVVTAVADGAIAATS 303 (555)
T ss_pred CCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHH
T ss_conf 0599988988345289877354708757999999