HHsearch alignment for GI: 254781053 and conserved domain: TIGR03169
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=6.3e-34 Score=265.47 Aligned_cols=278 Identities=21% Similarity=0.303 Sum_probs=192.4
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf 99998986689999999987---993999937997150251366737098999999999999866755816477532899
Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQL---KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466)
Q Consensus 5 vvIIG~G~AG~~aA~~~~~~---G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466)
T Consensus 2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~----~y~~~lp~--------~---~---~g~--~~~~~i~~~-- 59 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PYSGMLPG--------M---I---AGH--YSLDEIRID-- 59 (364)
T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC----EECCHHHH--------H---H---HCC--CCHHHEECC--
T ss_conf 999996099999999970417899839999998865----16251699--------9---7---404--779992216--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCE
Q ss_conf 9999999999987777787640043101100111002221023575211232210000467665244--45766532100
Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFDEQ 159 (466)
Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~~~ 159 (466)
T Consensus 60 ----------------~~~~~~~~gv~~i~~~V~~ID~~~k~V~~~~g-~~l~YD~LViAtGs~~~~~~i~G~~-----e 117 (364)
T TIGR03169 60 ----------------LRRLARQAGARFVIAEATGIDPDRRKVLLANR-PPLSYDVLSLDVGSTTPLSGVEGAA-----D 117 (364)
T ss_pred ----------------HHHHHHHCCCEEEEEEEEEEECCCCEEEECCC-CEEECCEEEEECCCCCCCCCCCCCC-----C
T ss_conf ----------------89999777949996378999768898998899-8873688999436777889999720-----2
Q ss_pred EEEEE---CCCCC----------CCCCCCCCCCCCCCCCCCCCCHHHHH----CCCCH-HHHHHCCCCCCCCCCCCCCCC
Q ss_conf 24530---57411----------11113332101234454332013220----12201-110000111221222211222
Q gi|254781053|r 160 VIVSS---TGALS----------FSSVPKNLLVIGAGVIGLELGSVWTR----LGSCV-KIIEHSGTILNGMDKEIAAHC 221 (466)
Q Consensus 160 ~~~t~---~~~~~----------l~~~P~~ivIIGgG~ig~E~A~~~~~----lG~~V-tli~~~~~ll~~~d~~~~~~~ 221 (466)
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~i~~~~~~l~~~~~~~~~~~ 197 (364)
T TIGR03169 118 LAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLV 197 (364)
T ss_pred CCEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCHHHHHHH
T ss_conf 64224779999999999998764057996458978581799999999999874687427998357751012599999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 22222222223220023442014687216999721332110000023204531210367840000126764223337763
Q gi|254781053|r 222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301 (466)
Q Consensus 222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~ 301 (466)
T Consensus 198 ~~~l~~~gI~v~~~~~v~~v~~~~----v~l--~~g--~~i~~d~vi~~~G~~p~~~---~~~~~l~~d~~G~I~Vd~~l 266 (364)
T TIGR03169 198 LRLLARRGIEVHEGAPVTRGPDGA----LIL--ADG--RTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTL 266 (364)
T ss_pred HHHHHHCCCEEEECCEEEEECCCC----EEE--CCC--CEEEEEEEEECCCCCCCHH---HHHCCCCCCCCCCEEECCCC
T ss_conf 999997795698375368977995----183--799--7896308998888778865---77446630789978878873
Q ss_pred EE-ECCCCEEECCCCCC-----CCCCCEECCCCCCEEECCCC
Q ss_conf 33-02684870243335-----43443000123201201112
Q gi|254781053|r 302 QT-SISTIYAIGDVVRG-----PMLAHKAEDEGIAVAEIISG 337 (466)
Q Consensus 302 ~T-s~p~IyA~GDv~g~-----~~l~~~A~~~g~~aa~~i~~ 337 (466)
T Consensus 267 q~~~~~~VfAiGD~a~~~~~p~pk~g~~A~~qa~~~a~Ni~~ 308 (364)
T TIGR03169 267 QSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred EECCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 768999999971543688999997438899999999999999