HHsearch alignment for GI: 254781053 and conserved domain: TIGR03169

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00  E-value=6.3e-34  Score=265.47  Aligned_cols=278  Identities=21%  Similarity=0.303  Sum_probs=192.4

Q ss_pred             EEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             99998986689999999987---993999937997150251366737098999999999999866755816477532899
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQL---KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~---G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
T Consensus         2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~----~y~~~lp~--------~---~---~g~--~~~~~i~~~--   59 (364)
T TIGR03169         2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PYSGMLPG--------M---I---AGH--YSLDEIRID--   59 (364)
T ss_pred             EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC----EECCHHHH--------H---H---HCC--CCHHHEECC--
T ss_conf             999996099999999970417899839999998865----16251699--------9---7---404--779992216--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCE
Q ss_conf             9999999999987777787640043101100111002221023575211232210000467665244--45766532100
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFDEQ  159 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~~~  159 (466)
T Consensus        60 ----------------~~~~~~~~gv~~i~~~V~~ID~~~k~V~~~~g-~~l~YD~LViAtGs~~~~~~i~G~~-----e  117 (364)
T TIGR03169        60 ----------------LRRLARQAGARFVIAEATGIDPDRRKVLLANR-PPLSYDVLSLDVGSTTPLSGVEGAA-----D  117 (364)
T ss_pred             ----------------HHHHHHHCCCEEEEEEEEEEECCCCEEEECCC-CEEECCEEEEECCCCCCCCCCCCCC-----C
T ss_conf             ----------------89999777949996378999768898998899-8873688999436777889999720-----2


Q ss_pred             EEEEE---CCCCC----------CCCCCCCCCCCCCCCCCCCCCHHHHH----CCCCH-HHHHHCCCCCCCCCCCCCCCC
Q ss_conf             24530---57411----------11113332101234454332013220----12201-110000111221222211222
Q gi|254781053|r  160 VIVSS---TGALS----------FSSVPKNLLVIGAGVIGLELGSVWTR----LGSCV-KIIEHSGTILNGMDKEIAAHC  221 (466)
Q Consensus       160 ~~~t~---~~~~~----------l~~~P~~ivIIGgG~ig~E~A~~~~~----lG~~V-tli~~~~~ll~~~d~~~~~~~  221 (466)
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~i~~~~~~l~~~~~~~~~~~  197 (364)
T TIGR03169       118 LAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLV  197 (364)
T ss_pred             CCEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCHHHHHHH
T ss_conf             64224779999999999998764057996458978581799999999999874687427998357751012599999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223220023442014687216999721332110000023204531210367840000126764223337763
Q gi|254781053|r  222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF  301 (466)
Q Consensus       222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~  301 (466)
T Consensus       198 ~~~l~~~gI~v~~~~~v~~v~~~~----v~l--~~g--~~i~~d~vi~~~G~~p~~~---~~~~~l~~d~~G~I~Vd~~l  266 (364)
T TIGR03169       198 LRLLARRGIEVHEGAPVTRGPDGA----LIL--ADG--RTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTL  266 (364)
T ss_pred             HHHHHHCCCEEEECCEEEEECCCC----EEE--CCC--CEEEEEEEEECCCCCCCHH---HHHCCCCCCCCCCEEECCCC
T ss_conf             999997795698375368977995----183--799--7896308998888778865---77446630789978878873


Q ss_pred             EE-ECCCCEEECCCCCC-----CCCCCEECCCCCCEEECCCC
Q ss_conf             33-02684870243335-----43443000123201201112
Q gi|254781053|r  302 QT-SISTIYAIGDVVRG-----PMLAHKAEDEGIAVAEIISG  337 (466)
Q Consensus       302 ~T-s~p~IyA~GDv~g~-----~~l~~~A~~~g~~aa~~i~~  337 (466)
T Consensus       267 q~~~~~~VfAiGD~a~~~~~p~pk~g~~A~~qa~~~a~Ni~~  308 (364)
T TIGR03169       267 QSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA  308 (364)
T ss_pred             EECCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             768999999971543688999997438899999999999999