HHsearch alignment for GI: 254781053 and conserved domain: pfam01593
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=96.14 E-value=0.0061 Score=39.92 Aligned_cols=52 Identities=29% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 12222222222222322002344201468721699972133211000002320453
Q gi|254781053|r 218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466)
Q Consensus 218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466)
T Consensus 207 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~v~~~--~G--~~~~ad~VI~a~p~ 258 (444)
T pfam01593 207 PQLIAAALGLLGGRVRLNTRVRSITKEGDGVTVTTV--DG--EVIEADAVIVTVPL 258 (444)
T ss_pred HHHHHHHHHCCCCEEEECCEEEEEEEECCEEEEEEC--CC--CEEECCEEEECCCH
T ss_conf 999999974159869958977899996996999988--99--76644868985798