HHsearch alignment for GI: 254781053 and conserved domain: pfam05834
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.59 E-value=0.0001 Score=52.76 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC--CCEE
Q ss_conf 199998986689999999987--993999937997--1502
Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT--YGGT 40 (466)
Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~--~GGt 40 (466)
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d 41 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNN 41 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 98999952999999999974089981999978988888998