RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
(466 letters)
>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
production and conversion].
Length = 506
Score = 502 bits (1295), Expect = e-143
Identities = 256/471 (54%), Positives = 334/471 (70%), Gaps = 11/471 (2%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YDV V+GGGP GY AIKAAQL K A +EK T GGTCLN+GCIPSKALL+ S +Y H
Sbjct: 40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLY-HE 98
Query: 63 AK--EAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
A+ + GI+++S LDL+ MM K + V+ T GI L KKNK+ G + N
Sbjct: 99 AQHEDFASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN 158
Query: 121 KILVKGSSSE-ETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLV 179
K+ VK E + I+AKNI+IATGSE + PG++ID E+ IVSSTGALS VPK L V
Sbjct: 159 KVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITID--EKKIVSSTGALSLKEVPKKLTV 216
Query: 180 IGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239
IGAG IGLE+GSVW+RLGS V ++E I MD EI+ +++ KQG+ F+L +KV+
Sbjct: 217 IGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVT 276
Query: 240 SVKKVKGKAQV---VYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIE 296
S + G V V + + +E D +LV+ GRRP+T+GLGLE+IGI +D RG +
Sbjct: 277 SATR-NGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVI 335
Query: 297 IGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPE 356
+ +FQT + IYAIGDV GPMLAHKAE+EGIA E I+G GHV+Y IPSVVYTHPE
Sbjct: 336 VNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPE 395
Query: 357 VASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGG 416
VA +GKTEEQLK E YKVGKFPFSAN RA++ N +GFVK+LA++++D++ GVHIIG
Sbjct: 396 VAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGP 455
Query: 417 SAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFD-QPIHM 466
+AGE+IHEA++ +E+G S+ED+AR+CHAHPT+SEA +EA ++ +D +PIH
Sbjct: 456 NAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYDGKPIHF 506
>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 498 bits (1285), Expect = e-141
Identities = 219/457 (47%), Positives = 293/457 (64%), Gaps = 6/457 (1%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
YDV V+G GPAGY AI+AAQL KVA++EK + GGTCLN+GCIPSKALLHA+E+
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIE 62
Query: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
A + GI+ +D +K+++ K +V T G+ LLKKN + G AR V +
Sbjct: 63 EARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH 122
Query: 121 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
+ V G +ETI A NI+IATGS PG D I+ S+ AL +PK+L+++
Sbjct: 123 TVEVTGED-KETITADNIIIATGSRPRIPPG--PGIDGARILDSSDALFLLELPKSLVIV 179
Query: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240
G G IGLE SV+ LGS V ++E IL G D EI+ K + K G+ LN+KV++
Sbjct: 180 GGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA 239
Query: 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300
V+K V D E IEADAVLVA GR+P T GLGLE G+ +D RG I++ Q
Sbjct: 240 VEKKDDGVLVTL--EDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQ 297
Query: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK-GHVNYGIIPSVVYTHPEVAS 359
T++ IYAIGDV+ GPMLAH A EG AE I+G K ++Y +IPSVV+T PE+AS
Sbjct: 298 MTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIAS 357
Query: 360 IGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAG 419
+G TEE+ K YKVGKFPF+ANGRA +M DGFVK++ ++++ R+ G HI+G A
Sbjct: 358 VGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGAS 417
Query: 420 EMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456
E+I+E A+ +E G ++EDLA HAHPT+SEA++EAA
Sbjct: 418 ELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454
>gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide
oxidoreductase [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 478
Score = 220 bits (562), Expect = 6e-58
Identities = 139/458 (30%), Positives = 220/458 (48%), Gaps = 20/458 (4%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSH 61
+D V+GGG G A A +AA KVA+ E GGTC+N+GC+P K + +A++ YS
Sbjct: 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAAD-YSE 78
Query: 62 IAKEAGDLGINIASCHLDLK-KMMSYKKSIVESNTQGI-NFLLKKNKIITYHGSARIVSN 119
++A D G I + K++ K+ GI L K + G AR VS
Sbjct: 79 EMEDAKDYGFPI-NEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSP 137
Query: 120 NKILVKGS-SSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFSSVPKN 176
++ V+ + ++ AK+I+IATG +PG + D S G PK
Sbjct: 138 GEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGID------SDGFFDLEEQPKR 191
Query: 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNS 236
++V+GAG I +E ++ LGS + +L G D+ I+ + + +G+N NS
Sbjct: 192 VVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNS 251
Query: 237 KVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIE 296
V+ V K ++V S + D +L A GR+P TKGL LE +G+ D G I
Sbjct: 252 SVTKVIKTDDGLELVITSHGTIE---DVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAII 308
Query: 297 IGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK--GHVNYGIIPSVVYTH 354
+ T++ +I+A+GDV L A G +A + G ++Y +P VV++H
Sbjct: 309 VDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSH 368
Query: 355 PEVASIGKTEEQL--KCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVH 412
P + ++G TEE+ K K KV F+ A S +K++ KS++V GVH
Sbjct: 369 PPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVH 428
Query: 413 IIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
+ G + E++ AV ++ G + D HPT +E
Sbjct: 429 MCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAE 466
>gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 503
Score = 190 bits (483), Expect = 9e-49
Identities = 132/472 (27%), Positives = 223/472 (47%), Gaps = 33/472 (6%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT--------YGGTCLNIGCIPSKALLH 54
YD+ V+GGG G ACA +AA L KVA ++ K GGTC+N+GCIP K L+H
Sbjct: 20 YDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKK-LMH 78
Query: 55 ASEMYSHIAKEAGDLGINIASCHL--DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHG 112
+ + +A G N+ + D K++ ++ ++S G L++ K+ +
Sbjct: 79 QAALLGEALHDARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINS 138
Query: 113 SARIVSNNKILVKGSSSEET-IEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALS 169
V +KI +E + A+N VIATG +PG ++ ++S S
Sbjct: 139 YGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIPG-----AKEYGITSDDLFS 193
Query: 170 FSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQG 229
P LV+GAG + LE G V ++ S +L G D+++A + M ++G
Sbjct: 194 LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERG 252
Query: 230 MNFQLNSKVSSVKKV-KGKAQVVYRSTD-DEPINIEADAVLVAAGRRPYTKGLGLEEIGI 287
+ F + V+++ GK +V Y++T+ E E D VL A GR+ T L L+ G+
Sbjct: 253 IKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGV 312
Query: 288 NID-HRGCIEIGGQFQTSISTIYAIGDVVRG-PMLAHKAEDEGIAVAE-IISGQKGHVNY 344
+ G I + + T++ +YA+GD++ P L A G +A + +G ++Y
Sbjct: 313 KTNEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDY 372
Query: 345 GIIPSVVYTHPEVASIGKTEEQ--LKCEKKSYKV--GKF-PFSANGRARSMNSIDGFVKI 399
+ + V+T E +G +EE K + + +V F P R + ++K
Sbjct: 373 DDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHC--YLKA 430
Query: 400 LANEK-SDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
+ +V G+HI+G +AGE+I A ++ G + +DL HPT +E
Sbjct: 431 VCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAE 482
>gnl|CDD|145812 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerization domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 152 bits (387), Expect = 2e-37
Identities = 59/110 (53%), Positives = 81/110 (73%)
Query: 347 IPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSD 406
+PSVV+T PE+AS+G TEE+ K + KVGKFPF ANGRA + GFVK++A+ ++
Sbjct: 1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETG 60
Query: 407 RVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456
R+ G HI+G +AGE+I EAA+ ++ G + EDLA HAHPT+SEA+ EAA
Sbjct: 61 RILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEAA 110
>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 89.6 bits (222), Expect = 2e-18
Identities = 75/340 (22%), Positives = 131/340 (38%), Gaps = 47/340 (13%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
+YDV ++GGGPAG AI AA+ KV +I + GG L +++ +
Sbjct: 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG-----------QLTKTTDVEN 50
Query: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
+ G LG + ++M + G+ + + + + G V
Sbjct: 51 YPGFPGGILGPELM------EQMKEQAEKF------GVEIVEDEVEKVELEGGPFKVK-- 96
Query: 121 KILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFSSVPKNLL 178
+ + T EAK ++IATG+ A G+PG + V +T F K+++
Sbjct: 97 -------TDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFF--KGKDVV 147
Query: 179 VIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKV 238
VIG G +E +++ V ++ H + + ++ + N+ V
Sbjct: 148 VIGGGDSAVEEALYLSKIAKKVTLV-HRRDEFRAEEILVE----RLKKNVKIEVLTNTVV 202
Query: 239 SSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIG 298
+ VV ++ E + D V +A G P T L + +D G I +
Sbjct: 203 KEIL-GDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNT---ELLKGLGVLDENGYIVVD 258
Query: 299 GQFQTSISTIYAIGDVVRGP-MLAHKAEDEG-IAVAEIIS 336
+ +TS+ I+A GDV A +G IA
Sbjct: 259 EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAER 298
>gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 75.0 bits (183), Expect = 4e-14
Identities = 68/349 (19%), Positives = 114/349 (32%), Gaps = 53/349 (15%)
Query: 5 VAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
+ +VGGG AG + A +L ++ +I +E Y + + +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS---YYRCPLSLYVGGGIASLEDLR 57
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARI-VSNNK 121
+ I + T I N
Sbjct: 58 YPPRFNRATGI--------------------------------DVRTGTEVTSIDPENKV 85
Query: 122 ILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGAL-----SFSSVPKN 176
+L+ IE +V+ATG+ P E V+ + PK+
Sbjct: 86 VLLDDGE----IEYDYLVLATGARPRPPPI---SDWEGVVTLRLREDAEALKGGAEPPKD 138
Query: 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM-DKEIAAHCLKIMSKQGMNFQLN 235
++V+GAG IGLE + G V +IE + + + D E+A +++ K G+ L
Sbjct: 139 VVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLG 198
Query: 236 SKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCI 295
+KV V+ V D I+AD V++ G RP G+ + +
Sbjct: 199 TKVVGVEGKGNTLVVERVVGIDG-EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVL 257
Query: 296 EIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNY 344
+ +YA GDV P A + IA+ I
Sbjct: 258 VDERGGTSKDPDVYAAGDVAEIP-AAETGKGGRIALWAIAVAAGRIAAE 305
Score = 36.4 bits (83), Expect = 0.019
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
DV VVG GP G A AA+ KV +IE GG
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173
>gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 72.2 bits (178), Expect = 3e-13
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLN 235
++V+G G IGLE S +LGS V ++E +L G D+EIA + + K G+ LN
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60
Query: 236 SKVSSVKKVKGKAQVVYRSTD 256
+ V ++ VV + D
Sbjct: 61 TTVEEIEGNGDGVLVVLETGD 81
>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 68.3 bits (167), Expect = 4e-12
Identities = 69/369 (18%), Positives = 124/369 (33%), Gaps = 85/369 (23%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
+ ++GGG G + A + A+ V I ++ L +Y
Sbjct: 6 IVILGGGFGGLSAAKRLARKLPDVEITLVDRR-------------DYHLFTPLLYEVATG 52
Query: 65 EAGDLGINIASCHLDLKKMMSYKKSI--VESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
++ + + L+ ++ ++ V+ I+ K+
Sbjct: 53 T-----LSESEIAIPLRALLRKSGNVQFVQGEVTDIDR--DAKKVTL------------- 92
Query: 123 LVKGSSSEETIEAKNIVIATGSEAS--GLPGM---SIDFDE--------QVIVSSTGALS 169
+ I +V+A GSE + G+PG + + ++ + S
Sbjct: 93 -----ADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147
Query: 170 FSSVPKNLL---VIGAGVIGLEL-GSVWTRLGSC------------VKIIEHSGTILNGM 213
+ LL ++G G G+EL G + RL V ++E IL
Sbjct: 148 QEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMF 207
Query: 214 DKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273
+++ + + + K G+ L + V+ V V D I AD V+ AAG
Sbjct: 208 PPKLSKYAERALEKLGVEVLLGTPVTEV-----TPDGVT--LKDGEEEIPADTVVWAAGV 260
Query: 274 RPYTKGLGLEEIGINIDHRGCIEIGGQFQ-TSISTIYAIGDVVRG------PMLAHKAED 326
R L + G+ D RG + + Q I+A GD P A A
Sbjct: 261 RASP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQ 318
Query: 327 EGIAVAEII 335
+G A+ I
Sbjct: 319 QGEYAAKNI 327
>gnl|CDD|36550 KOG1336, KOG1336, KOG1336, Monodehydroascorbate/ferredoxin
reductase [General function prediction only].
Length = 478
Score = 68.4 bits (167), Expect = 4e-12
Identities = 61/250 (24%), Positives = 97/250 (38%), Gaps = 42/250 (16%)
Query: 94 NTQGINFLLK-----KNKIITYHGSARIVS---NNKILVKGSSSEETIEAKNIVIATGSE 145
T G + K K I +V +K LV + ET++ ++IATGS
Sbjct: 123 LTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLV--LGNGETLKYSKLIIATGSS 180
Query: 146 ASGLPGMSIDFD---EQVIVSSTGALSFSSVP-KNLLVIGAGVIGLELGSVWTRLGSCVK 201
A L ++ + L + ++ +G G IG+E+ + V
Sbjct: 181 AKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVT 240
Query: 202 IIEHSGTILNGM-DKEIAAHCLKIMSKQGMNFQLNS-----------KVSSVKKVKGKAQ 249
++ +L + I +G+ F L + +VS VK GK
Sbjct: 241 VVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK-- 298
Query: 250 VVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIY 309
+EAD V+V G +P T E GI +D +G I++ FQTS+ +Y
Sbjct: 299 -----------TLEADLVVVGIGIKPNT---SFLEKGILLDSKGGIKVDEFFQTSVPNVY 344
Query: 310 AIGDVVRGPM 319
AIGDV P+
Sbjct: 345 AIGDVATFPL 354
>gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 64.9 bits (158), Expect = 5e-11
Identities = 65/310 (20%), Positives = 119/310 (38%), Gaps = 28/310 (9%)
Query: 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS---NNKILVKGSSSEETIEAK 136
L +++ +K+ + + ++ + IT + +++ NK++ + + T+
Sbjct: 48 LSSVLAGEKTAEDISLNRNDWYEENG--ITLYTGEKVIQIDRANKVVT--TDAGRTVSYD 103
Query: 137 NIVIATGSEASGLPGMSIDFDEQVIVSST-----GALSFSSVPKNLLVIGAGVIGLELGS 191
++IATGS LP D V V T L + K +VIG G++GLE
Sbjct: 104 KLIIATGSYPFILPIPGSDLPG-VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAAR 162
Query: 192 VWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIM-SKQGMNFQLNSKVSSVKKVKGKAQV 250
LG V ++ + T++ A L+ G+ L + V
Sbjct: 163 GLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGV 222
Query: 251 VYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYA 310
+ + I AD V++A G RP + + +N RG I + QTS IYA
Sbjct: 223 RFADGTE----IPADLVVMAVGIRPNDELAKEAGLAVN---RG-IVVNDYMQTSDPDIYA 274
Query: 311 IGDVV----RGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHP--EVASIGKTE 364
+G+ + L ++ +A+ + G + G + S +V S G +
Sbjct: 275 VGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQ 334
Query: 365 EQLKCEKKSY 374
E E +
Sbjct: 335 ETEGAESIVF 344
>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 54.5 bits (132), Expect = 6e-08
Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 35/169 (20%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPS-----KALLHASEM 58
DV V+GGG AG A+ AA++ KV +I T + C PS K L E+
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLI---THNTDTIAELSCNPSIGGIAKGHLVR-EI 56
Query: 59 ---YSHIAKEAGDLGINIASCHLDLKK------------MMSYKKSIVE--SNTQGINFL 101
+ K A GI L+ K Y K + E N +
Sbjct: 57 DALGGLMGKAADKTGIQFRM--LNTSKGPAVRALRAQVDRDLYSKEMTETLENHPNL--- 111
Query: 102 LKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLP 150
+I + I N K+ + E +AK +VIATG+ +G
Sbjct: 112 ----TLIQGEVTDLIPENGKVKGVVTEDGEEYKAKAVVIATGTFLNGKI 156
>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 51.3 bits (122), Expect = 6e-07
Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
M YDV +VG GPAG + A + A+ V ++EK G G + +AL E+
Sbjct: 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRAL---EELIP 58
Query: 61 HIAKEAGDLGINIASCHLDLKK---MMSYKKSIVESNTQGINFLLKK-----NKIITYHG 112
+E + A + +K + + + + +L ++ ++
Sbjct: 59 DFDEEIER-KVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTR 117
Query: 113 SARIVSNNKILVKG-SSSEETIEAKNIVIATGSEAS 147
++ + +V G + ++ + AK ++ A G ++
Sbjct: 118 VTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153
>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 50.1 bits (119), Expect = 1e-06
Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 25/218 (11%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMY 59
DVA++G G +G A A Q I EK GGT P L + +
Sbjct: 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT-WRYNRYPGLR-LDSPKWL 64
Query: 60 SHIAKEAGDLGINIASCHLDLKKMMSY-KKSIVESNTQGINFLLKKNKIITYHGSARIVS 118
A + Y +K + + T A
Sbjct: 65 LGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIR----------FNTRVEVADWDE 114
Query: 119 NNK--ILVKGSSSEETIEAKNIVIATGSEASG----LPGMSIDFDEQVIVSS--TGALSF 170
+ K + + A +V+ATG + G+ +F +++ S+
Sbjct: 115 DTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLD-EFKGRILHSADWPNPEDL 173
Query: 171 SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT 208
K +LVIGAG +++ +G+ V + + S
Sbjct: 174 R--GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209
>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 50.0 bits (120), Expect = 2e-06
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
DV V+G G AG A A++AA+ KVA++EK + +GG
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGA 37
>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 49.5 bits (119), Expect = 2e-06
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG 38
YDV V+GGG AG AI AA+ +V +IEK K G
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLG 36
>gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 49.5 bits (118), Expect = 2e-06
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 257 DEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF-QTSISTIYAIGDVV 315
AD V++A G L E G+ +D RG I++ QTSI ++A GD V
Sbjct: 367 GTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAV 426
Query: 316 RGPMLAHKAEDEGIAVAEII 335
RG L A EG A+ I
Sbjct: 427 RGAALVVWAIAEGREAAKAI 446
Score = 36.1 bits (83), Expect = 0.020
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VAV+G GPAG A A ++ + V + E+ GG
Sbjct: 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160
>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 48.3 bits (115), Expect = 4e-06
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG 38
+DV ++GGGPAG AI AA+ +V +I+K G
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39
Score = 30.2 bits (68), Expect = 1.2
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK--- 278
LK + G+ + S+VSSV+K +R ++ D++++A G + + K
Sbjct: 118 LKELEALGVTIRTRSRVSSVEK----DDSGFRLDTSSGETVKCDSLILATGGKSWPKLGS 173
Query: 279 -GLG---LEEIGINI 289
G G + G I
Sbjct: 174 TGFGYPIARQFGHTI 188
>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 47.4 bits (112), Expect = 7e-06
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41
+YDV V+G G G A A A+ KV ++EK GG
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42
>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 47.4 bits (112), Expect = 9e-06
Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 26/164 (15%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY-----GGTCLN---------IGC 46
+ DVA+VG GPAG A A+ A+ V ++E+ G L+ +G
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60
Query: 47 IPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKK-- 104
L ++ + + G + D ++ V + +N LL+
Sbjct: 61 WDRLEALGVPPLHVMVVDDGGRRLL-----IFDAAELGRGALGYVVPRSDLLNALLEAAR 115
Query: 105 -NKIITYHGSARIV----SNNKILVKGSSSEETIEAKNIVIATG 143
+T A + + + V S ET++A +V A G
Sbjct: 116 ALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADG 159
>gnl|CDD|37626 KOG2415, KOG2415, KOG2415, Electron transfer flavoprotein
ubiquinone oxidoreductase [Energy production and
conversion].
Length = 621
Score = 44.2 bits (104), Expect = 7e-05
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNK------VAIIEKEKTYGGTCLNIGCIPSKAL 52
DV +VG GPAG + AI+ QL K V ++EK GG L+ I AL
Sbjct: 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGAL 132
>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 42.6 bits (100), Expect = 2e-04
Identities = 73/330 (22%), Positives = 132/330 (40%), Gaps = 63/330 (19%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YDV VVGGGPAG A AI AA+ + ++ + +GG L+ I + S +
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVLDTMGIEN----FISVPETEG 265
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
K A L ++ +D+ + K + + +G ++
Sbjct: 266 PKLAAALEAHVKQYDVDVMNLQRASK-LEPAAVEGGLIEVE------------------- 305
Query: 123 LVKGSSSEETIEAKNIVIATGSE--ASGLPGMSIDFDEQVIVSSTGALSFSSVP----KN 176
L G+ ++A+ +++ATG+ +PG +++ P K
Sbjct: 306 LANGAV----LKARTVILATGARWRNMNVPG-----EDEYRNKGVAYCPHCDGPLFKGKR 356
Query: 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCL---KIMSKQGMNFQ 233
+ VIG G G+E + V ++E E+ A + K+ S +
Sbjct: 357 VAVIGGGNSGVEAAIDLAGIVEHVTLLE--------FAPELKADAVLQDKLRSLPNVTII 408
Query: 234 LNSKVSSVK----KVKGKAQVVYRS-TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGIN 288
N++ + VK KV G + YR E ++E + V V G P T+ L + +
Sbjct: 409 TNAQTTEVKGDGDKVTG---LEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL---KGAVE 462
Query: 289 IDHRGCIEIGGQFQTSISTIYAIGDVVRGP 318
++ RG I + + +T++ ++A GD P
Sbjct: 463 LNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 501
Score = 41.1 bits (96), Expect = 6e-04
Identities = 48/277 (17%), Positives = 94/277 (33%), Gaps = 33/277 (11%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
V V+G G AG + A + V ++E GG + SE H+
Sbjct: 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG----------RIYTFKSEGGDHV 65
Query: 63 AKEAGDLGINIAS-CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYH--GSARIVSN 119
DLG ++ + + + ++S + + + L +N +
Sbjct: 66 -----DLGASVLTGVYNNPLALLSKQLGLELYKVRDTCPLFNENGGESDKVFDDFVEQEF 120
Query: 120 NKILVKGSSSEETIEAKNIVIATGS-----EASGLPGMSIDFDEQVIVSSTGALSFSSVP 174
N++L S+ E+ ++ + I I+ S EA + ++++
Sbjct: 121 NRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKTLLELLLEGEADKVLQWHL 180
Query: 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQL 234
NL + + +W + + G + + + +G++ L
Sbjct: 181 VNLELTFIAHLENASARLWDQD-ELFGGGGIHLLMKGGYEPVVNSL------AEGLDIHL 233
Query: 235 NSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAA 271
N +V +K A V T D EADAV+V
Sbjct: 234 NKRVRKIKYGDDGAVKVTVETGD---GYEADAVVVTV 267
>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 41.1 bits (96), Expect = 6e-04
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
+DV V+GGG AG AI+AA+ KVA++ K G
Sbjct: 7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44
>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 41.1 bits (96), Expect = 7e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAII 31
M +DVA++GGG AG C + Q + AI+
Sbjct: 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIV 31
>gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 448
Score = 40.0 bits (93), Expect = 0.001
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 28/207 (13%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
M DVAV+G GPAG A A + + ++V + E+ GG + ++H+S S
Sbjct: 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL---WKYTENVEVVHSSVYKS 61
Query: 61 ---HIAKEAG-----DLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHG 112
++ KE ++++ Y + + +F L K I
Sbjct: 62 LRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAK------HFDLLK-MINFNTE 114
Query: 113 SARIVSNNK----ILVKGSSSEETIE-AKNIVIATGSEASG----LPGMSID-FDEQVIV 162
R+ S +K + K + ++ E +V+ TG +PG I+ F ++I
Sbjct: 115 VVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIH 174
Query: 163 SSTGALSFSSVPKNLLVIGAGVIGLEL 189
S K +LV+G G G+++
Sbjct: 175 SHDYKSPEKFRDKVVLVVGCGNSGMDI 201
Score = 30.0 bits (67), Expect = 1.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 232 FQLNSKVSSVKKV-KGKAQVVYRSTDDEPINIEADAVLVAAG-----RRPYTKGLGLEEI 285
N++V V + KGK +V + + DAV+V G R P G G+E
Sbjct: 109 INFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESF 168
Query: 286 GINIDH 291
I H
Sbjct: 169 KGKIIH 174
>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
[Coenzyme metabolism].
Length = 262
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
DV +VG GP+G A A+ KVAI E++ ++GG
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67
>gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 322
Score = 39.2 bits (91), Expect = 0.003
Identities = 62/318 (19%), Positives = 107/318 (33%), Gaps = 44/318 (13%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
V ++G GPA + AI AA+ + K + E G I P L +++ +
Sbjct: 11 VVIIGSGPAAHTAAIYAARAELKPLLFE-----GMMANGIA--PGGQLTTTTDVENFPGF 63
Query: 65 EAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILV 124
G G + K+ + I+ ++ K K+ T
Sbjct: 64 PDGITGPELMD--KMRKQSERFGTEIITETVSKVDLSSKPFKLWT--------------- 106
Query: 125 KGSSSEETIEAKNIVIATGSEASGL--PG-MSIDFDEQVIVSSTGALSFSSVPKN--LLV 179
+ A +++ATG+ A L PG +F ++ I + + + +N L V
Sbjct: 107 ----DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAV 162
Query: 180 IGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239
IG G +E T+ S V II + + + N+
Sbjct: 163 IGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQ-----QRAEKNPNIEVLYNTVAV 217
Query: 240 SVKKVKGKAQ--VVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI 297
+ E ++ + A G P TK L + + +D G I
Sbjct: 218 EALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFL---KGQVELDEDGYIVT 274
Query: 298 -GGQFQTSISTIYAIGDV 314
G TS+ ++A GDV
Sbjct: 275 RPGTSLTSVPGVFAAGDV 292
>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 38.4 bits (88), Expect = 0.005
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
M DV ++GGG G + A A+ V ++E + GG
Sbjct: 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA 42
>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 38.0 bits (88), Expect = 0.005
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
V V+GGG AG A++ A + KV ++EKE + GG
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162
>gnl|CDD|37706 KOG2495, KOG2495, KOG2495, NADH-dehydrogenase (ubiquinone) [Energy
production and conversion].
Length = 491
Score = 38.0 bits (88), Expect = 0.006
Identities = 64/294 (21%), Positives = 110/294 (37%), Gaps = 54/294 (18%)
Query: 88 KSIVESNTQGINFLLKKNKIITYHGSARIV---SNNKILVK-----GSSSEETIEAKNIV 139
+SIVE KKN + Y + N K+ + S E I +V
Sbjct: 107 RSIVEP---IRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLV 163
Query: 140 IATGSEAS--GLPGMS--------IDFDEQVIVSSTGALSFSSVP-------KNLL---V 179
IA G+E + G+PG+ ++ +++ L + +P K LL V
Sbjct: 164 IAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVV 223
Query: 180 IGAGVIGLELG------------SVWTRLGSCVKI--IEHSGTILNGMDKEIAAHCLKIM 225
+G G G+E ++ L +K+ IE + ILN DK + +
Sbjct: 224 VGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQF 283
Query: 226 SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEI 285
+ G++ + VKKV K + ++ D E I ++ A G P L +
Sbjct: 284 VRDGIDLDTG---TMVKKVTEK-TIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMK- 338
Query: 286 GINIDHRGCIEIGGQFQ-TSISTIYAIGD---VVRGPMLAHKAEDEGIAVAEII 335
I+ R + + + + ++AIGD A AE +G +A+
Sbjct: 339 QIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNF 392
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 37.8 bits (88), Expect = 0.006
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
DV +VG GP+G A A+ KVAIIE+ + GG
Sbjct: 16 AESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGG 54
>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 37.2 bits (86), Expect = 0.009
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41
+D +VG G +G A AAQL +V I+EK GG
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40
>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 309
Score = 36.6 bits (85), Expect = 0.017
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34
DV V+GGG G + A + A+ V ++E+
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERG 31
Score = 30.8 bits (70), Expect = 0.77
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIG 286
G+ ++V+ +++ G V T D I AD V+ AAG ++ L L +G
Sbjct: 159 ALGVEILEGTEVTGLEREGGGVTVE---TADG--EIRADKVVNAAG--AWSDEL-LRLLG 210
Query: 287 INI 289
+++
Sbjct: 211 LDL 213
>gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase
[Energy production and conversion].
Length = 680
Score = 36.1 bits (83), Expect = 0.019
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
+DV ++GGG G CA+ AA K A++E GT
Sbjct: 68 FDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105
>gnl|CDD|33187 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 35.3 bits (81), Expect = 0.040
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
+A+VG G AG A A + +V + EK + GG
Sbjct: 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38
>gnl|CDD|30924 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 34.1 bits (78), Expect = 0.079
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 205 HSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEA 264
SG I++ E+ + G+ +LN++V+ ++K V+ S +E +EA
Sbjct: 145 PSGGIVDP--GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEET--LEA 200
Query: 265 DAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301
V+ AAG Y L + GI D + + G++
Sbjct: 201 KFVINAAGL--YADPL-AQMAGIPEDFKIFP-VRGEY 233
Score = 32.5 bits (74), Expect = 0.26
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEKTYG 38
M YDV ++GGG G A A + ++ + VA++EKE
Sbjct: 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41
>gnl|CDD|113586 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyses the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 33.5 bits (77), Expect = 0.13
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 4 DVAVVGGGPAGY-ACAIKAAQLKNKVAI--IEKEKT 36
+ +VGGG AG+ A A A LK + + +E E+
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVESEEI 36
>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 32.6 bits (74), Expect = 0.23
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
+DV V+GGG G A AA KVA++EK GT
Sbjct: 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT 50
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 32.6 bits (74), Expect = 0.24
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 21/142 (14%)
Query: 251 VYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYA 310
YR TD + I I +D+V + RR Y + + + +D RG G + S+ A
Sbjct: 1140 TYRGTDIDYIKIRSDSVSSSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLASLIIRLA 1199
Query: 311 IGDVVRGP--MLA----------HKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPE-- 356
+ + +LA E A++ II ++ N+ +I V TH E
Sbjct: 1200 LAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLI---VITHDEDF 1256
Query: 357 VASIGKTEEQLKCEKKSYKVGK 378
V +G++ E Y+V K
Sbjct: 1257 VQLLGRSA---YPE-YFYRVKK 1274
>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor
[Amino acid transport and metabolism].
Length = 856
Score = 32.6 bits (74), Expect = 0.25
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 21/103 (20%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEK--EKTYGGTCLNIGCIPS--------KALL 53
DV V+GGG G + A A+ K A++ + T G T G + + +
Sbjct: 41 DVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIA 100
Query: 54 HASEM-YSHIAKEAG-------DLGINIAS--CHLD-LKKMMS 85
H S + Y + +E G + GI +AS LD K++MS
Sbjct: 101 HTSRVLYRELEEETGLHTGWIQNGGIFLASNRQRLDEYKRLMS 143
>gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport
and metabolism].
Length = 2142
Score = 31.9 bits (72), Expect = 0.37
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 237 KVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIE 296
+V K KG+ Q+ + +E IEAD V++A G K + E++ + D R I
Sbjct: 2019 RVEWEKDDKGRWQMKEINNSEE--IIEADLVILAMGFVGPEKSVI-EQLNLKTDPRSNIL 2075
Query: 297 I-GGQFQTSISTIYAIGDVVRGPMLAHKAEDEG 328
+ T ++ ++A GD RG L A EG
Sbjct: 2076 TPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEG 2108
Score = 31.5 bits (71), Expect = 0.58
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VA++G GPAG A A + + + V + E+ GG
Sbjct: 1788 VAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822
Score = 30.3 bits (68), Expect = 1.2
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHS----GTILNG-----MDKEIAAHCLKIM 225
K + +IG+G GL + G V + E S G ++ G +DK + + ++
Sbjct: 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLL 1845
Query: 226 SKQGMNFQLNSKV 238
++G+ F N+++
Sbjct: 1846 EQEGIRFVTNTEI 1858
>gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme
transport and metabolism].
Length = 561
Score = 31.5 bits (71), Expect = 0.57
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIP 48
YD V+GGG G A A+ VA++E+ GG + +P
Sbjct: 15 YDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVP 60
>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in
cell division [Cell division and chromosome
partitioning].
Length = 621
Score = 31.3 bits (71), Expect = 0.60
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAII 31
YDV V+GGG AG A+ AA++ K ++
Sbjct: 5 YDVIVIGGGHAGVEAALAAARMGAKTLLL 33
>gnl|CDD|34178 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 31.1 bits (70), Expect = 0.67
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 3 YDVAVVGGGPAGYACAI---KAAQLKNKVAIIEKEKTYGG 39
+ VA++GGG +G A K+ + ++I E +G
Sbjct: 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41
>gnl|CDD|33157 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 31.1 bits (70), Expect = 0.68
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41
VA+ G G AG A A + A V + E GG
Sbjct: 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39
>gnl|CDD|37011 KOG1800, KOG1800, KOG1800, Ferredoxin/adrenodoxin reductase
[Nucleotide transport and metabolism].
Length = 468
Score = 30.7 bits (69), Expect = 0.77
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 5 VAVVGGGPAG-YACAIKAAQLKN-KVAIIEKEKTYGG 39
V +VG GPAG Y + N V I EK G
Sbjct: 23 VCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59
>gnl|CDD|37876 KOG2665, KOG2665, KOG2665, Predicted FAD-dependent oxidoreductase
[Function unknown].
Length = 453
Score = 30.3 bits (68), Expect = 1.0
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 3 YDVAVVGGGPAGYACA----IKAAQLKNKVAIIEKEKTYG 38
YD+ VVGGG G A A ++ L KVA++EKEK+
Sbjct: 49 YDLVVVGGGIVGLASARELSLRHPSL--KVAVLEKEKSLA 86
>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
involved in translation [Translation, ribosomal
structure and biogenesis].
Length = 679
Score = 30.3 bits (68), Expect = 1.0
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPS 49
YDV V+GGG AG A AA+L + ++ G C PS
Sbjct: 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEM---SCNPS 72
>gnl|CDD|34002 COG4280, COG4280, Predicted membrane protein [Function unknown].
Length = 236
Score = 30.3 bits (68), Expect = 1.0
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 126 GSSSEETIEAKNIVIATGSEAS---GLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGA 182
GSS E +EA I A G+ L G + +I++ VP N L I +
Sbjct: 11 GSSLVELVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLYLVPLNYLQIVS 70
Query: 183 GVIGLELGSVWTR 195
GV+ L G W R
Sbjct: 71 GVLLLLFGYRWIR 83
>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
flavoprotein monooxygenases [Energy production and
conversion, General function prediction only].
Length = 420
Score = 29.9 bits (67), Expect = 1.6
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY--GGTCLNIG 45
V +VGGG G A A+ + V ++E + GT +N+
Sbjct: 4 KVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLA 47
>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 29.6 bits (67), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEK-EKTY 37
DV +VGGGPAG A+ A+ +V ++E+ T
Sbjct: 2 TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTS 37
>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 29.7 bits (66), Expect = 1.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIE 32
M YD +VG G AG A + + V ++E
Sbjct: 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLE 37
>gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 29.6 bits (66), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34
DV VVG G AG A + A +V I+++E
Sbjct: 6 ADVIVVGAGLAGLVAAAELADAGKRVLILDQE 37
>gnl|CDD|39059 KOG3855, KOG3855, KOG3855, Monooxygenase involved in coenzyme Q
(ubiquinone) biosynthesis [Coenzyme transport and
metabolism, Energy production and conversion].
Length = 481
Score = 29.6 bits (66), Expect = 2.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
YDV +VGGGP G A AA L + +K+ L+ G P SE +S
Sbjct: 36 KYDVVIVGGGPVGLAL---AAALGSNPPFQDKKVLL----LDAGDSPKLGDFKPSETFS 87
>gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 29.1 bits (65), Expect = 2.4
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIA 63
DV ++G G AG A+ A + + + G I + AL H+A
Sbjct: 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGI-AAALSEDDSPELHVA 67
Query: 64 K--EAGDLGIN 72
AG G+
Sbjct: 68 DTLAAGA-GLC 77
Score = 27.9 bits (62), Expect = 5.6
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 251 VYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYA 310
+Y + I+ + + V YT G GI +D G +TSI +YA
Sbjct: 315 IYAACLKAGIDPTREPIPVVPAAH-YTMG------GIAVDANG--------RTSIPGLYA 359
Query: 311 IGDV 314
IG+V
Sbjct: 360 IGEV 363
>gnl|CDD|37615 KOG2404, KOG2404, KOG2404, Fumarate reductase, flavoprotein
subunit [Energy production and conversion].
Length = 477
Score = 29.2 bits (65), Expect = 2.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
V V+GGG AG + + V ++EK + GG
Sbjct: 12 VVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46
>gnl|CDD|37614 KOG2403, KOG2403, KOG2403, Succinate dehydrogenase, flavoprotein
subunit [Energy production and conversion].
Length = 642
Score = 28.8 bits (64), Expect = 3.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
YD VVG G AG A A+L K A+I K
Sbjct: 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITK 86
>gnl|CDD|36932 KOG1720, KOG1720, KOG1720, Protein tyrosine phosphatase CDC14
[Defense mechanisms].
Length = 225
Score = 28.7 bits (64), Expect = 3.8
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 351 VYTHPEVASIGKTEEQLKCEKKSYKVG----KFPFSANGRARSMNSIDGFVKILANEKSD 406
+ + V SI + ++L K+ G F A+G + + FVKI+ N +
Sbjct: 89 YFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFF-ADGSTPTDAIVKEFVKIVENAEKG 147
Query: 407 RVEGVHIIG--GSAGEMIHEAAVLM 429
VH G G +I A LM
Sbjct: 148 GKIAVHCKAGLGRTGTLI--ACYLM 170
>gnl|CDD|31425 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 28.3 bits (63), Expect = 4.0
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 5 VAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGG 39
+A++GGG AG + A + + +V + E + GG
Sbjct: 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39
>gnl|CDD|35904 KOG0685, KOG0685, KOG0685, Flavin-containing amine oxidase
[Coenzyme transport and metabolism].
Length = 498
Score = 28.4 bits (63), Expect = 4.3
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 19/155 (12%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNK-VAIIEKEKTYGGTCLNIGCIPSKALLHA-------- 55
+ ++G G AG A A + + V I+E GG I L A
Sbjct: 24 IVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEG 83
Query: 56 SEMYSHIAKEAGDLGINIAS--CHLDLKKMMSYKKSIVESN-------TQGINFLLKKNK 106
+ +Y +AKE GDL + + ++D S + + E T ++ L++ +
Sbjct: 84 NPVY-ELAKEYGDLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKLREAE 142
Query: 107 IITYHGSARIVSNNKILVKGSSSEETIEAKNIVIA 141
I GS N++ + E K +
Sbjct: 143 IAHDEGSVGEYLNSEFWDELRGPENPEIDKTLAEE 177
>gnl|CDD|31956 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
Length = 682
Score = 28.3 bits (63), Expect = 4.4
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 374 YKVGKFPFSANGRARSMNSIDGFV---KILANEKSDRVEGVHIIGGSAGEMIHEAAVLME 430
Y+ GK N+ F+ + L E + + IGGSAG M+ A M
Sbjct: 496 YEDGKL-------LNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMA 548
>gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid
transport and metabolism].
Length = 509
Score = 28.0 bits (62), Expect = 6.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34
DV +VG G AG A A A+ +V +IE++
Sbjct: 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77
>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde
dehydrogenase related proteins, child 2.
Glutathione-dependent formaldehyde dehydrogenases (FDHs)
are members of the zinc-dependent/medium chain alcohol
dehydrogenase family. Formaldehyde dehydrogenase (FDH)
is a member of the zinc-dependent/medium chain alcohol
dehydrogenase family. FDH converts formaldehyde and NAD
to formate and NADH. The initial step in this process
the spontaneous formation of a
S-(hydroxymethyl)glutathione adduct from formaldehyde
and glutathione, followed by FDH-mediated oxidation (and
detoxification) of the adduct to S-formylglutathione.
These tetrameric FDHs have a catalytic zinc that resides
between the catalytic and NAD(H)binding domains and a
structural zinc in a lobe of the catalytic domain. The
medium chain alcohol dehydrogenase family (MDR) has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 344
Score = 28.0 bits (63), Expect = 6.5
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 5 VAVVGGGPAGYACAIKAAQ 23
VAV+G GP G CA+ +AQ
Sbjct: 171 VAVIGCGPVGL-CAVLSAQ 188
>gnl|CDD|36490 KOG1276, KOG1276, KOG1276, Protoporphyrinogen oxidase [Coenzyme
transport and metabolism].
Length = 491
Score = 27.6 bits (61), Expect = 7.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35
VAVVGGG +G A A+L V I E
Sbjct: 13 TVAVVGGGISGLCAAYYLARLGPDVTITLFEA 44
>gnl|CDD|31424 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 27.6 bits (61), Expect = 7.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCL 42
DV +VG G AG + A + + +V I+E GG L
Sbjct: 9 DVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47
>gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline
dehydrogenase/mandelonitrile lyase (GMC oxidoreductase
family) [General function prediction only].
Length = 623
Score = 27.6 bits (61), Expect = 8.5
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKN-KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMY 59
YD VVGGG AG A + ++ N V ++E GG P A +Y
Sbjct: 58 YDYIVVGGGTAGCVLAARLSENPNWSVLLLEA----GGDPPLYSDPPLLAANLQLSLY 111
>gnl|CDD|33098 COG3288, PntA, NAD/NADP transhydrogenase alpha subunit [Energy
production and conversion].
Length = 356
Score = 27.6 bits (61), Expect = 8.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 174 PKNLLVIGAGVIGLELGSVWTRLGSCV 200
P +LVIGAGV GL + RLG+ V
Sbjct: 164 PAKVLVIGAGVAGLAAIATAVRLGAIV 190
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 27.6 bits (62), Expect = 8.7
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 175 KNLLVIGAGVIGLELGSVWTRLGSCVKII 203
++VIGAG IGL L W ++ ++I
Sbjct: 161 DTVVVIGAGTIGL-LAIQWLKILGAKRVI 188
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.316 0.133 0.376
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,230,516
Number of extensions: 274040
Number of successful extensions: 893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 97
Length of query: 466
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 369
Effective length of database: 4,167,664
Effective search space: 1537868016
Effective search space used: 1537868016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)