RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
(466 letters)
>gnl|CDD|180529 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 584 bits (1508), Expect = e-167
Identities = 240/474 (50%), Positives = 310/474 (65%), Gaps = 13/474 (2%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY------GGTCLNIGCIPSKALLHAS 56
+DV V+G GP GY AI+AAQL KVA IE K GGTCLN+GCIPSKALL +S
Sbjct: 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASS 64
Query: 57 EMYSHIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARI 116
E + + D GI++ +D+ KM++ K +V+ T GI L KKNKI G
Sbjct: 65 EEFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSF 124
Query: 117 VSN----NKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSS 172
V +I V G E I AK+++IATGSE LPG + FD ++I+ +TGAL+F+
Sbjct: 125 VGKTDAGYEIKVTGED-ETVITAKHVIIATGSEPRHLPG--VPFDNKIILDNTGALNFTE 181
Query: 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232
VPK L VIGAGVIGLELGSVW RLG+ V I+E L D+++A K +KQG++
Sbjct: 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDI 241
Query: 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR 292
L K+ +K V Y D E +E D ++V+ GR P T GLGLE +G+ +D R
Sbjct: 242 HLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDER 301
Query: 293 GCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVY 352
G I + +T++ +YAIGDVVRGPMLAHKAE+EG+AVAE I+GQKGH++Y IP V+Y
Sbjct: 302 GFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIY 361
Query: 353 THPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVH 412
T PE+A +GKTE+QLK E YK GKFPF ANGRA +M DGFVKI+A+ K+D + GVH
Sbjct: 362 TSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVH 421
Query: 413 IIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466
+IG +A E+I EA V MEF SSED+ARICHAHPT+SE EAAL+ +P+H
Sbjct: 422 VIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDKRPLHF 475
>gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The motif
GGXCXXXGCXP near the N-terminus contains a redox-active
disulfide.
Length = 461
Score = 557 bits (1438), Expect = e-159
Identities = 224/465 (48%), Positives = 310/465 (66%), Gaps = 6/465 (1%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YDV V+GGGP GY AI+AAQL KVA++EKE GGTCLN+GCIP+KALLH++E+Y
Sbjct: 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEY-LGGTCLNVGCIPTKALLHSAEVY-DE 59
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
K A D GI + + +D +KM K +V+ G+ LLKKNK+ G A+ + +
Sbjct: 60 IKHAKDYGIEVENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTV 119
Query: 123 LVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGA 182
LV G + EET+ AKNI+IATGS LPG DFD +V+++STGAL+ VP++L++IG
Sbjct: 120 LVTGENGEETLTAKNIIIATGSRPRSLPG-PFDFDGEVVITSTGALNLKEVPESLVIIGG 178
Query: 183 GVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVK 242
GVIG+E S++ LGS V +IE IL G D E++ K + K+G+ N+KV++V+
Sbjct: 179 GVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVE 238
Query: 243 KVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQ 302
K QVVY + E + + VLVA GR+P T+GLGLE +G+ +D RG I + +
Sbjct: 239 K--NDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMR 296
Query: 303 TSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKG-HVNYGIIPSVVYTHPEVASIG 361
T++ IYAIGDV+ GPMLAH A EGI AE I+G++ ++Y +PS +YT PEVAS+G
Sbjct: 297 TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVG 356
Query: 362 KTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEM 421
TEEQ K K+GKFPF+ANG+A ++ DGFVKI+A++K+ + G HIIG A E+
Sbjct: 357 LTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATEL 416
Query: 422 IHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466
I EA + ME + E+LA+ H HPT+SEA++EAAL+ +PIHM
Sbjct: 417 ISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALAALGKPIHM 461
>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 549 bits (1418), Expect = e-157
Identities = 214/466 (45%), Positives = 273/466 (58%), Gaps = 11/466 (2%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YDV V+G GPAGY A +AA+L KVA+IEK GGTCLN+GCIPSKAL+ A+E + H
Sbjct: 4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAF-HE 61
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGIN-FLLKKNKIITYHGSARIVSNNK 121
AK A + GI+ +D KK+M+ + + G+ L KK KI G+AR V N
Sbjct: 62 AKHAEEFGIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNT 121
Query: 122 ILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIG 181
+ V E IEAKNIVIATGS +PG +++S A +PK+L VIG
Sbjct: 122 VEVN----GERIEAKNIVIATGSRVPPIPG-VWLILGDRLLTSDDAFELDKLPKSLAVIG 176
Query: 182 AGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSV 241
GVIGLELG +RLG V + E IL D E++ KI+SK+ +L +KV+SV
Sbjct: 177 GGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSV 235
Query: 242 KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301
+K G +V + IEAD VLVA GRRP T GLGLE GI +D RG +
Sbjct: 236 EK-SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT 294
Query: 302 QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASI 360
QTS+ IYA GDV P L H+A DEG AE +G G V Y IPSVV+T P++AS+
Sbjct: 295 QTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASV 354
Query: 361 GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE 420
G TEE+LK Y VG+ PF A GRAR M DGFVK+ A++K+ R+ G HIIG A
Sbjct: 355 GLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEH 414
Query: 421 MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466
+IH A M+ G + EDL R+ HPT+SE +R A F + IH
Sbjct: 415 LIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFSKLIHG 460
>gnl|CDD|180558 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 510 bits (1315), Expect = e-145
Identities = 217/466 (46%), Positives = 291/466 (62%), Gaps = 6/466 (1%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
YDV V+G GP GY AI+AAQL KVAI+EKEK GGTCLN GCIPSKALLHA+E
Sbjct: 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERA- 60
Query: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
A+ + D GI + +D KK+ +K +V T G+ LLKKNK+ G A++V N
Sbjct: 61 DEARHSEDFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPN 120
Query: 121 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
+ V E+T AKNI++ATGS LPG I+ D +VI +S AL+ VPK+L+VI
Sbjct: 121 TVRVMTEDGEQTYTAKNIILATGSRPRELPG--IEIDGRVIWTSDEALNLDEVPKSLVVI 178
Query: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240
G G IG+E S + LG+ V I+E IL G DKEI+ + + K+G+ + +K
Sbjct: 179 GGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKK 238
Query: 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300
V++ V + +EAD VLVA GRRP T+ LGLEE+G+ D RG IE+ Q
Sbjct: 239 VEQTDDGVTVTL-EDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQ 296
Query: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI 360
+T++ IYAIGD+V GPMLAHKA EGI AE I+G ++Y IP+V YTHPEVAS+
Sbjct: 297 LRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASV 356
Query: 361 GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE 420
G TE + K E KV KFPF+ NG+A ++ DGFVK++ ++K V G H++G A E
Sbjct: 357 GLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASE 416
Query: 421 MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466
+I EA + + + + EDLA H HPT+SEA+ EAAL+ +P+H
Sbjct: 417 LIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALAAAGKPLHA 462
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 508 bits (1309), Expect = e-144
Identities = 241/463 (52%), Positives = 310/463 (66%), Gaps = 17/463 (3%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMY-SH 61
YDV ++GGGP GY AI+A QL KVA +E T GGTCLN+GC+PSKALLHASE+Y +
Sbjct: 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAA 63
Query: 62 IAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNK 121
E LGI + L+L +MM K VE+ T+G+ FL +KNK+ G R+ K
Sbjct: 64 SGGEFAHLGIEV-KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGK 122
Query: 122 ILVKGSS-SEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
++VK SE +EAK+IVIATGSE + LPG++ID Q I+ STGALS VPK+L+VI
Sbjct: 123 VVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTID--NQRIIDSTGALSLPEVPKHLVVI 180
Query: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240
GAGVIGLELGSVW RLG+ V ++E+ I G D E A K ++KQGM F+L SKV+
Sbjct: 181 GAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG 240
Query: 241 VKKVKGKAQVVYRSTDDEPI------NIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGC 294
+ EP ++AD VLVA GRRPYT+GLGLE +G+ D RG
Sbjct: 241 ATAGADGVSL-----TLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGM 295
Query: 295 IEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTH 354
+ +TS+ ++ IGDV GPMLAHKAEDE +A E I+G+ G VNYG+IP V+YT
Sbjct: 296 LA-NDHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTR 354
Query: 355 PEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHII 414
PEVA++GKTEEQLK E ++YKVGKFPF+AN RA+ + +GF KILA+ ++D V GVH++
Sbjct: 355 PEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMV 414
Query: 415 GGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAAL 457
G S EMI E V MEF S+ED+A CH HPT SEA+R+AA+
Sbjct: 415 GPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAM 457
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 490 bits (1263), Expect = e-139
Identities = 181/466 (38%), Positives = 265/466 (56%), Gaps = 7/466 (1%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
V V+G GPAGY+ A +AA L + +E+ T GG CLN+GCIPSKALLH +++
Sbjct: 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVI-EE 63
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
AK + GI +D+ KM + K+ +V+ T G+ + K K+ +G + N +
Sbjct: 64 AKALAEHGIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTL 123
Query: 123 LVKGSS-SEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIG 181
V G IE N +IA GS LP I D+ I ST AL VPK LLV+G
Sbjct: 124 EVTGEDGKTTVIEFDNAIIAAGSRPIQLP--FIPHDDPRIWDSTDALELKEVPKRLLVMG 181
Query: 182 AGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSV 241
G+IGLE+G+V+ RLGS V ++E ++ DK+I K + KQ N L +KV++V
Sbjct: 182 GGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAV 240
Query: 242 KKVKGKAQVVYRSTDDEPINIEA-DAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300
+ K V P + DAVLVA GR P K L E+ G+ +D RG I + Q
Sbjct: 241 E-AKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ 299
Query: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI 360
+T++ I+AIGD+V PMLAHK EG AE+I+G+K + + +IPS+ YT PEVA +
Sbjct: 300 CRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV 359
Query: 361 GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE 420
G TE++ K E Y+ FP++A+GRA + + DG K++ ++++ RV G I+G +AGE
Sbjct: 360 GLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGE 419
Query: 421 MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466
++ E + +E G +ED+A HAHPT+ E+V AA + +
Sbjct: 420 LLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGSITDL 465
>gnl|CDD|180333 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 453 bits (1169), Expect = e-128
Identities = 195/472 (41%), Positives = 281/472 (59%), Gaps = 14/472 (2%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YD+ ++GGGP GY AI+A QL K A++EK K GGTCL+ GCIPSKALLH++E++
Sbjct: 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL-GGTCLHKGCIPSKALLHSAEVF-QT 62
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIV----- 117
AK+A GI+++ LD K+ K IV+ T+G+ LLKK KI +HG RI+
Sbjct: 63 AKKASPFGISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIF 122
Query: 118 --SNNKILVKGSSSE-ETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVP 174
+ V+ + E E I +N++IATGS LPG+ FD + ++SS ALS ++P
Sbjct: 123 SPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGL--PFDGEYVISSDEALSLETLP 180
Query: 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQL 234
K+L+++G GVIGLE S+ G V ++E + IL D E++ +++ K G+
Sbjct: 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVT 240
Query: 235 NSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGC 294
+KV + K ++ + E +EAD VLV+ GRRP T+G+GLE I+++ G
Sbjct: 241 GAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEG-GF 299
Query: 295 IEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGH-VNYGIIPSVVYT 353
I+I QT IYAIGDV+ P LAH A EG AE I+G+K +Y IP+ YT
Sbjct: 300 IQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYT 359
Query: 354 HPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHI 413
PEVAS+G TEE+ K KVGKFPF+ANG+A + DGFVK++A+ + + GV
Sbjct: 360 DPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQA 419
Query: 414 IGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIH 465
+G E+I E A+ +E G ++A H HPT+SEA++EAAL+ +H
Sbjct: 420 VGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAADGHALH 471
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 359 bits (923), Expect = e-100
Identities = 170/463 (36%), Positives = 266/463 (57%), Gaps = 10/463 (2%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
+ V+GGGPAGY AI AAQ V +I+ E GGTCLN GC+P+K+LL ++E++ + K
Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLID-EADLGGTCLNEGCMPTKSLLESAEVHDKV-K 60
Query: 65 EAGDLGI--NIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
+A GI S +D K+M + K IV QGI +L+KKNKI G A +++++
Sbjct: 61 KANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRV 120
Query: 123 LVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGA 182
V+ EE ++A+ +IA GSE + LP FD + I++S A+S S+P +LL++G
Sbjct: 121 RVEYGDKEEVVDAEQFIIAAGSEPTELPFAP--FDGKWIINSKHAMSLPSIPSSLLIVGG 178
Query: 183 GVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVK 242
GVIG E S+++RLG+ V I+E + +L G D++IA + + G+ + + +
Sbjct: 179 GVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238
Query: 243 KVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQ 302
K +A Y + + A+ VLV+ GR+P + L LE+ G+ ++G I + Q
Sbjct: 239 SYKKQALFEY---EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQ 294
Query: 303 TSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGK 362
T++ IYA GDV+ G LAH A EG A SG+ VNY +P +YT PE+AS+G
Sbjct: 295 TNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGL 354
Query: 363 TEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMI 422
TE+Q + + ++G+FPF+ANG+A + G VK++ K + G+ IIG A E+I
Sbjct: 355 TEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELI 414
Query: 423 HEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIH 465
+ V++ +++ + AHPT+SEA+ EA L +H
Sbjct: 415 GQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVGHAVH 457
>gnl|CDD|181132 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 336 bits (863), Expect = 1e-92
Identities = 176/457 (38%), Positives = 248/457 (54%), Gaps = 8/457 (1%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YDV V+G GP GY AI+AAQL K A++E +K +GG CLN+GCIPSKALL +E+
Sbjct: 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVE-KKYWGGVCLNVGCIPSKALLRNAELAHIF 63
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
KEA GI+ D + + E +G++FL+KKNKI HG N +
Sbjct: 64 TKEAKTFGIS-GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTL 122
Query: 123 LVKGSS-SEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIG 181
V + ET+ N +IATGS LPG S+ E V+ LS +PK++++ G
Sbjct: 123 EVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLS--ENVVTYEEQILS-RELPKSIVIAG 179
Query: 182 AGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSV 241
AG IG+E V G V I+E L D E++ K K G+ +KV S+
Sbjct: 180 AGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESI 239
Query: 242 KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301
K V D + +EAD VL A G P +G GLE+ G+ + RG I I
Sbjct: 240 DDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYM 299
Query: 302 QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGH--VNYGIIPSVVYTHPEVAS 359
+T++ IYAIGDV LAH AE +G+ AE I+G + +Y ++P + P+VAS
Sbjct: 300 RTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVAS 359
Query: 360 IGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAG 419
G TEEQ + E KV KFPF+ANG+A + GFVK++A+ K + G H+IG
Sbjct: 360 FGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVS 419
Query: 420 EMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456
E++ E + ++ ++E+LAR H HPT+SEA++EA
Sbjct: 420 ELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAF 456
>gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 322 bits (827), Expect = 1e-88
Identities = 152/459 (33%), Positives = 238/459 (51%), Gaps = 16/459 (3%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YD V+G G AG A +AA L KVA+IE+ GGTC+N GC+P+K L+ ++ H+
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIER-GLLGGTCVNTGCVPTKTLIASARAA-HL 63
Query: 63 AKEAGDLGINIASC-HLDLKKMMSYKKSIVESNTQGINFLLKKNKIIT-YHGSARIVSNN 120
A+ A + G+++ +D K +M+ K+ I + G L+ + + + G AR S N
Sbjct: 64 ARRAAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPN 123
Query: 121 KILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFSSVPKNLL 178
+ V ET+ AK I I TG+ A+ +PG+ DE +++ S +P++L+
Sbjct: 124 TVRV----GGETLRAKRIFINTGARAAIPPIPGL----DEVGYLTNETIFSLDELPEHLV 175
Query: 179 VIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKV 238
+IG G IGLE ++ R GS V +IE +L D+++AA +I+ ++G++ +LN++
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAEC 235
Query: 239 SSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIG 298
V++ V P I +LVA GR P T LGLE G+ D RG I++
Sbjct: 236 IRVERDGDGIAVGLDCNGGAPE-ITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD 294
Query: 299 GQFQTSISTIYAIGDVVRGPMLAHKAEDEG-IAVAEIISGQKGHVNYGIIPSVVYTHPEV 357
Q +T+ IYA GD H A ++ I A ++ G + V+ I+P YT P +
Sbjct: 295 DQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPL 354
Query: 358 ASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGS 417
A +G TE + + + VG P + GRA GF+K++ + +DR+ G I+G
Sbjct: 355 ARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVH 414
Query: 418 AGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456
EMIHE M G L+R H HPT+SE + A
Sbjct: 415 GDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLA 453
>gnl|CDD|162675 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH.
Length = 463
Score = 306 bits (785), Expect = 8e-84
Identities = 157/468 (33%), Positives = 244/468 (52%), Gaps = 30/468 (6%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YD+ ++G G A +A AIKAA+L VA++E GGTC+N+GC+PSK LL A+E+ H
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE-RGPLGGTCVNVGCVPSKMLLRAAEVA-HY 58
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIIT---------YHGS 113
A++ G A+ +D +++ K+ +VE L+ K G
Sbjct: 59 ARKP-PFGGLAATVAVDFGELLEGKREVVEE--------LRHEKYEDVLSSYGVDYLRGR 109
Query: 114 ARIVSNNKILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFS 171
AR + V E AK +IATG+ + +PG+ E ++S AL+
Sbjct: 110 ARFKDPKTVKVDLG--REVRGAKRFLIATGARPAIPPIPGL----KEAGYLTSEEALALD 163
Query: 172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMN 231
+P++L VIG G IG+EL + RLGS V I++ S +L + EI+A + ++++G+
Sbjct: 164 RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIE 223
Query: 232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH 291
+++V +V G + +EAD +LVA GRRP T GLGLE+ G+ +D
Sbjct: 224 VVTSAQVKAVSVRGGGKIITV-EKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDE 282
Query: 292 RGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAE-IISGQKGHVNYGIIPSV 350
RG I + +TS IYA GDV G L + A EG+ AE + G ++ +IP V
Sbjct: 283 RGGILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRV 342
Query: 351 VYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEG 410
V+T P VAS+G TE + + P + RAR GF+K++A + +V G
Sbjct: 343 VFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLG 402
Query: 411 VHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALS 458
V ++ A E+I+EAA+ + G + +DL H PTM+E ++ AA +
Sbjct: 403 VQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQT 450
>gnl|CDD|179973 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 299 bits (769), Expect = 7e-82
Identities = 152/465 (32%), Positives = 233/465 (50%), Gaps = 26/465 (5%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHA------- 55
YD+ V+G GPAG A++AA+L +VA+IE+ + GG C + G IPSKAL A
Sbjct: 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGF 65
Query: 56 --SEMYSHIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS 113
+ +YS + +++ ++ + ++N++ G
Sbjct: 66 NQNPLYSSYRV----------KLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGR 115
Query: 114 ARIVSNNKILVKGSS-SEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSS 172
AR V + + V+ ET+ A IVIATGS P +DFD I S LS
Sbjct: 116 ARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD--VDFDHPRIYDSDSILSLDH 173
Query: 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232
+P++L++ GAGVIG E S++ LG V +I +L+ +D EI+ + G+
Sbjct: 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTI 233
Query: 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR 292
+ N +V V+ V +S I+AD +L A GR T GL LE G+ D R
Sbjct: 234 RHNEEVEKVEGGDDGVIVHLKSGK----KIKADCLLYANGRTGNTDGLNLENAGLEADSR 289
Query: 293 GCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVY 352
G +++ +QT++ IYA+GDV+ P LA + D+G A+ G+ IP+ +Y
Sbjct: 290 GQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLIEDIPTGIY 349
Query: 353 THPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVH 412
T PE++S+GKTE++L K Y+VG+ F RA+ G +KIL + ++ + GVH
Sbjct: 350 TIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVH 409
Query: 413 IIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAAL 457
G A E+IH +ME G+ E +PTM+EA R AAL
Sbjct: 410 CFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAAL 454
>gnl|CDD|180410 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 250 bits (642), Expect = 4e-67
Identities = 137/467 (29%), Positives = 219/467 (46%), Gaps = 46/467 (9%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YD+ V+GGG G A A +AA KVA+IE K GGTC+N+GC+P K + + +++
Sbjct: 5 YDLIVIGGGSGGIASANRAAMYGAKVALIE-AKRLGGTCVNVGCVPKKLMWYGAQIAEAF 63
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFL-------LKKNKIITYHGSAR 115
A G ++ D K+ + + I+ L L+ N + G AR
Sbjct: 64 HDYAPGYGFDVTENKFDWAKL-------IANRDAYIDRLHGSYRNGLENNGVDLIEGFAR 116
Query: 116 IVSNNKILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFSSV 173
V + + V G E A +I+IATG S +PG E I +S G + +
Sbjct: 117 FVDAHTVEVNG----ERYTADHILIATGGRPSIPDIPGA-----EYGI-TSDGFFALEEL 166
Query: 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQ 233
PK + V+GAG I +E V LGS + L G D +I ++ M K+G+
Sbjct: 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH 226
Query: 234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRG 293
N+ +V+K + + + + D ++ A GR P T GLGLE G+ ++ +G
Sbjct: 227 TNAVPKAVEKNADGSLTLTLEDGET---LTVDCLIWAIGREPNTDGLGLENAGVKLNEKG 283
Query: 294 CIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKG--HVNYGIIPSVV 351
I + T++ IYA+GDV L A G ++E + K ++Y IP+VV
Sbjct: 284 YIIVDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVV 343
Query: 352 YTHPEVASIGKTEEQL--KCEKKSYKVGKFPFSANGRARSM-NSIDG-----FVKILANE 403
++HP + ++G TEE+ + + + KV + F M ++ G +K++
Sbjct: 344 FSHPPIGTVGLTEEEAREQYGEDNVKVYRSSF------TPMYTALTGHRQPCLMKLVVVG 397
Query: 404 KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
K ++V G+H IG A EMI AV ++ G + D HPT +E
Sbjct: 398 KEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 241 bits (617), Expect = 2e-64
Identities = 142/452 (31%), Positives = 232/452 (51%), Gaps = 29/452 (6%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT-YGGTCLNIGCIPSKALLHASEMYSH 61
YD+ V+G G AG A K A KVA++E+ K YGGTC+NIGCIP+K LL A
Sbjct: 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVA------ 57
Query: 62 IAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINF-LLKKNKIITYHGSARIVSNN 120
A +L +++M+ K ++ S +G N+ +L + + Y A VSN
Sbjct: 58 ------------AEKNLSFEQVMATKNTVT-SRLRGKNYAMLAGSGVDLYDAEAHFVSNK 104
Query: 121 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
I V+ + + A+ IVI TG+ ++ LP + D + + STG S ++P+ L +I
Sbjct: 105 VIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLA-DSKHVYDSTGIQSLETLPERLGII 163
Query: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240
G G IGLE ++ +LGS V +++ + TIL + +AA + M + G+ F LN+ +
Sbjct: 164 GGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTE 223
Query: 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300
VK + VV T+DE DA+L A GR+P T+ LGLE I + RG I++
Sbjct: 224 VKNDGDQVLVV---TEDE--TYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY 278
Query: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK--GHVNYGIIPSVVYTHPEVA 358
QTS+ ++A+GDV GP + + D+ V ++G + G +P+ ++ P ++
Sbjct: 279 CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLS 338
Query: 359 SIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSA 418
+G TE++ K Y V + +A RA N + G K++ N ++ + G + G +
Sbjct: 339 QVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGS 398
Query: 419 GEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
E+I+ + M+ + HPTM+E
Sbjct: 399 QEIINLITMAMDNKIPYTYFKKQIFTHPTMAE 430
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 225 bits (576), Expect = 1e-59
Identities = 155/542 (28%), Positives = 248/542 (45%), Gaps = 98/542 (18%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK-TYGGTCLNIGCIPSKALLHASE---- 57
YDV ++G G G+A AI A + KV I + + GGTC+N+GCIPSKALL+A+
Sbjct: 117 YDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRE 176
Query: 58 -----------MYSHIAKEAGDLGINIA-----SCHLDLKKMMSYKKSIVESNTQGINFL 101
+Y++ K + + + +D+ K+ Y +S+++ GI
Sbjct: 177 LKNLAKLYTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENG 236
Query: 102 LKKNKI---------ITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGM 152
LK K I G IV N I K S + + KNI+IATGS P +
Sbjct: 237 LKSKKFCKNSEHVQVIYERG--HIVDKNTI--KSEKSGKEFKVKNIIIATGS----TPNI 288
Query: 153 --SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL 210
+I+ D++ + +S A+ + + ++G G+IGLE ++T LGS V E+S +L
Sbjct: 289 PDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348
Query: 211 NGMDKEIAAHCLKIMSK-QGMNFQLNSKVSSVKKVKGKAQVVYRSTD------DEPIN-- 261
+D ++A + ++ K + + LN+ + V+ KG V+ ++ D P
Sbjct: 349 PLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNM 408
Query: 262 -----IEADAVLVAAGRRPYTKGLGLEEIGINIDHRG------CIEIGGQFQTSISTIYA 310
D+ LVA GR+P T LGL+++ I + RG + + + Q I+
Sbjct: 409 NDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFC 467
Query: 311 IGDVVRGPMLAHKAEDEGIAVAEIISGQKGH-------------VNYGIIPSVVYTHPEV 357
IGD MLAH A + + V + I G+ + Y IPSV YT PE+
Sbjct: 468 IGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPEL 527
Query: 358 ASIGKTEEQLKCEKKSYKVGKFP--FSANGRARSMNSI---------------------- 393
A IG TE++ K VG + AN + N+I
Sbjct: 528 AFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNT 587
Query: 394 DGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVR 453
+G VKI+ + + + G+ I+G A +IHE + + S +DLA + H+HPT+SE +
Sbjct: 588 EGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLD 647
Query: 454 EA 455
A
Sbjct: 648 AA 649
>gnl|CDD|162352 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria.
Length = 446
Score = 219 bits (559), Expect = 1e-57
Identities = 136/459 (29%), Positives = 215/459 (46%), Gaps = 32/459 (6%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YD+ V+G G G A AA KVAI E E GGTC+ GC+P K +++ S
Sbjct: 3 YDLFVIGAGSGGVRAARLAANHGAKVAIAE-EPRVGGTCVIRGCVPKKLMVYGSTFGGEF 61
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
++A G + D KK++ K + + LL + G AR+V N +
Sbjct: 62 -EDAAGYGWTVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTV 120
Query: 123 LVKGSSSEETIEAKNIVIATGSEA--SGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
V + T AK I+IA G LPG ++ ++S A ++PK++L++
Sbjct: 121 EVLQDGT--TYTAKKILIAVGGRPQKPNLPGH------ELGITSNEAFHLPTLPKSILIL 172
Query: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240
G G I +E +W LG V +I IL G D ++ A + M +G+ + ++S
Sbjct: 173 GGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTS 232
Query: 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300
+ K +V + E I AD VL A GR P TKGLGLE G+ ++ G I +
Sbjct: 233 ITKTDDGLKVT--LSHGEEI--VADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY 288
Query: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEI-ISGQKGHVNYGIIPSVVYTHPEVAS 359
+TSI +IYA+GDV L A E A ++ +I + V++ P + +
Sbjct: 289 SRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGT 348
Query: 360 IGKTEEQLKCEKKSYKVGKF--PFSANGRARSM-NSIDG-----FVKILANEKSDRVEGV 411
+G TEE+ + EK + + + F R M N+ G +K++ +EK D+V G
Sbjct: 349 VGLTEEEAR-EKFTGDILVYRAGF------RPMKNTFSGRQEKTLMKLVVDEKDDKVLGA 401
Query: 412 HIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
H++G A E+I A+ ++ G + D HP+ +E
Sbjct: 402 HMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAE 440
>gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 277
Score = 207 bits (529), Expect = 4e-54
Identities = 112/320 (35%), Positives = 155/320 (48%), Gaps = 47/320 (14%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIA 63
DV ++GGGPAG A AI A+L KVA+IEKE GGTC N GCIP K LL A+E+
Sbjct: 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKE---GGTCYNRGCIPKKLLLEAAEVG---- 53
Query: 64 KEAGDLGINIASCHLDLKKMMSYKKSIVESNT-QGINFLLKKNKIITYHGSARIVSNNKI 122
LDL+ + YK +E G+ + K K +T
Sbjct: 54 -------------KLDLRPLEQYKDEGIEVLLGTGVTAIDKAGKKVTL------------ 88
Query: 123 LVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFSSVPK-NLLV 179
+ + +VIATG+ +PG ++ D ++S AL+ PK ++V
Sbjct: 89 -----DDGKELTYDKLVIATGARPRRPPIPG--VELDGVFYLTSDDALALREKPKKRVVV 141
Query: 180 IGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239
+G G IGLEL + +LG+ V ++E +L D EI A L+ + + G L +KV
Sbjct: 142 VGGGYIGLELAAALAKLGAEVTVVERRDRLLARADDEIRAALLEKLEELGGVIVLLAKVE 201
Query: 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGG 299
V +V VV +D IEADA LVA GR P L LE+ G+ +D RG I +
Sbjct: 202 VVVEVVEG-VVVKVVLEDG---IEADADLVAIGRGPNPNTLLLEKAGLELDERGYIVVDE 257
Query: 300 QFQTSISTIYAIGDVVRGPM 319
+TS+ IYA GDV G
Sbjct: 258 YLRTSVPGIYAAGDVAEGRP 277
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident
bacteria.
Length = 450
Score = 206 bits (526), Expect = 1e-53
Identities = 138/463 (29%), Positives = 225/463 (48%), Gaps = 36/463 (7%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YD V+GGG G A A +AA+ K ++E K GGTC+N+GC+P K + +AS++ +
Sbjct: 3 YDYLVIGGGSGGIASARRAAEHGAKALLVE-AKKLGGTCVNVGCVPKKVMWYASDL-AER 60
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFL-------LKKNKIITYHGSAR 115
+A D G +L+ ++ + + E ++ L L+KNK+ G AR
Sbjct: 61 MHDAADYGFYQ-----NLENTFNWPE-LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR 114
Query: 116 IVSNNKILVKGSSSEETIEAKNIVIATGSEAS---GLPGMSIDFDEQVIVSSTGALSFSS 172
+ + V G A +I+IATG + S +PG + D S G +
Sbjct: 115 FTKDGTVEVNG----RDYTAPHILIATGGKPSFPENIPGAELGTD------SDGFFALEE 164
Query: 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232
+PK ++++GAG I +EL V LGS ++ +L D I+ + K+G+N
Sbjct: 165 LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINV 224
Query: 233 QLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH 291
SK KV+ + +D + D ++ A GR+P TKGLGLE +GI ++
Sbjct: 225 HKLSKP---VKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNE 281
Query: 292 RGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK--GHVNYGIIPS 349
+G I + T++ IYA+GDVV L A G ++E + K ++Y +P+
Sbjct: 282 KGQIIVDEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT 341
Query: 350 VVYTHPEVASIGKTEEQL--KCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDR 407
VV++HP + +IG TE++ K K++ KV F+ A + +K++ K ++
Sbjct: 342 VVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEK 401
Query: 408 VEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
V G+H IG EM+ AV ++ G + D HPT SE
Sbjct: 402 VVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSE 444
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 202 bits (516), Expect = 1e-52
Identities = 133/465 (28%), Positives = 222/465 (47%), Gaps = 46/465 (9%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT-YGGTCLNIGCIPSKALLHASEMYSH 61
Y ++G G AG A+ A+ +VA+IE+ YGGTC+NIGCIP+K L+H ++
Sbjct: 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--- 60
Query: 62 IAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKN--------KIITYHGS 113
H D + + K +V NFL KN I G
Sbjct: 61 ---------------HTDFVRAIQRKNEVV-------NFLRNKNFHNLADMPNIDVIDGQ 98
Query: 114 ARIVSNNKILVKGSSSEETIEAKNIVIATGSEA--SGLPGMSIDFDEQVIVSSTGALSFS 171
A ++N+ + V I + I I TG++ +PG++ + STG L+
Sbjct: 99 AEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITT---TPGVYDSTGLLNLK 155
Query: 172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMN 231
+P +L ++G G IG+E S++ GS V I+E + L D++IA + I+ QG++
Sbjct: 156 ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVD 215
Query: 232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH 291
LN+ V + + + QV E + DA+L+A+GR+P T L E GI ++
Sbjct: 216 IILNAHVERISHHENQVQV-----HSEHAQLAVDALLIASGRQPATASLHPENAGIAVNE 270
Query: 292 RGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII--SGQKGHVNYGIIPS 349
RG I + T+ I+A+GDV G + + D+ V + + G++ + +P
Sbjct: 271 RGAIVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPY 330
Query: 350 VVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVE 409
V+ P ++ +G TEEQ + +V P +A RAR MN G +K + + K+ R+
Sbjct: 331 SVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRIL 390
Query: 410 GVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVRE 454
G ++ + EMI+ ++M+ G L HP+MSE++ +
Sbjct: 391 GASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLND 435
>gnl|CDD|173157 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 201 bits (513), Expect = 3e-52
Identities = 138/463 (29%), Positives = 238/463 (51%), Gaps = 29/463 (6%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
+AV+G G + A A+KA + +V +IE+ T GGTC+NIGC+PSK ++ A+ + +H+ +
Sbjct: 9 IAVIGSGGSAMAAALKATERGARVTLIER-GTIGGTCVNIGCVPSKIMIRAAHI-AHLRR 66
Query: 65 EAG-DLGINIASCHLDLKKMMSYKKSIVE----SNTQGINFLLKKNKIIT-YHGSARIVS 118
E+ D G++ + +D +++ +++ VE S Q I L++N IT +G AR V
Sbjct: 67 ESPFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSI---LRENAAITVLNGEARFVD 123
Query: 119 NNKILVK-GSSSEETIEAKNIVIATGSEASG--LPGMSIDFDEQVIVSSTGALSFSSVPK 175
+ V E+T+ I TG+ + +PG++ E ++ST AL +P+
Sbjct: 124 ERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLA----ETPYLTSTSALELDHIPE 179
Query: 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLN 235
LLVIGA V+ LEL + RLGS V ++ S +L+ D + ++G+
Sbjct: 180 RLLVIGASVVALELAQAFARLGSRVTVLARS-RVLSQEDPAVGEAIEAAFRREGIEVLKQ 238
Query: 236 SKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCI 295
++ S V G+ ++ + + A+ +LVA GR P T+ L LE IG+ + RG I
Sbjct: 239 TQASEVDY-NGREFILETNAG----TLRAEQLLVATGRTPNTENLNLESIGVETE-RGAI 292
Query: 296 EIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHP 355
I QT++S IYA GD P + A G A ++G ++ +P V++T P
Sbjct: 293 RIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDP 352
Query: 356 EVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSID--GFVKILANEKSDRVEGVHI 413
+VA++G +E + + + Y R++ + D GF+K++A S R+ GV +
Sbjct: 353 QVATVGLSEAEAQ--AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQV 410
Query: 414 IGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456
+ G AGE+I A + + + ++A + TM E ++ A
Sbjct: 411 VAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCA 453
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 196 bits (500), Expect = 1e-50
Identities = 144/478 (30%), Positives = 241/478 (50%), Gaps = 43/478 (8%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
VAV+G G A A A+KA + +V +IE+ T GGTC+N+GC+PSK ++ A+ + +H+ +
Sbjct: 101 VAVIGSGGAAMAAALKAVEQGARVTLIER-GTIGGTCVNVGCVPSKIMIRAAHI-AHLRR 158
Query: 65 EAG-DLGINIASCHLDLKKMMSYKKSIVE----SNTQGINFLLKKNKIIT-YHGSARIVS 118
E+ D GI +D ++++ +++ V+ + +GI L N IT HG AR
Sbjct: 159 ESPFDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGI---LDGNPAITVLHGEARFKD 215
Query: 119 NNKILV-KGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFSSVPK 175
+ ++V E + +IATG+ + +PG+ E +ST AL ++P+
Sbjct: 216 DQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK----ETPYWTSTEALVSDTIPE 271
Query: 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLN 235
L VIG+ V+ LEL + RLGS V I+ S T+ D I +G+ +
Sbjct: 272 RLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEH 330
Query: 236 SKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCI 295
++ S V V G + V + E + AD +LVA GR P T+ L L+ G+ ++ +G I
Sbjct: 331 TQASQVAHVDG--EFVLTTGHGE---LRADKLLVATGRAPNTRSLALDAAGVTVNAQGAI 385
Query: 296 EIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHP 355
I +TS+ IYA GD P + A G A ++G ++ +P+VV+T P
Sbjct: 386 VIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDP 445
Query: 356 EVASIGKTEEQ-----LKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEG 410
+VA++G +E + ++ + ++ + P RA + GF+K++ E S R+ G
Sbjct: 446 QVATVGYSEAEAHHDGIETDSRTLTLDNVP-----RALANFDTRGFIKLVIEEGSGRLIG 500
Query: 411 VHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA---------LSC 459
V + AGE+I AA+ + + ++LA + TM E ++ AA LSC
Sbjct: 501 VQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNKDVKQLSC 558
>gnl|CDD|173190 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 192 bits (490), Expect = 1e-49
Identities = 128/457 (28%), Positives = 215/457 (47%), Gaps = 16/457 (3%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
VA++G G A +A AIKAA+ +V IIE GG C+N+GC+PSK L+ A+++ +H +
Sbjct: 19 VAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQL-AHQQR 77
Query: 65 EAGDLGINIASCHLDLKKMMSYKKSIVES-NTQGINFLLKKNKIITY-HGSARIVSNNKI 122
G+ + +D ++ +++ VE +L N +T G AR N +
Sbjct: 78 SNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTL 137
Query: 123 LV-KGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFSSVPKNLLV 179
+V E + A +IATGS + +PG+ + +ST AL +P +L V
Sbjct: 138 VVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM----DTPYWTSTEALFSDELPASLTV 193
Query: 180 IGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239
IG+ V+ E+ + RLGS V I+ S T+L D + K+G+ N++ S
Sbjct: 194 IGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQAS 252
Query: 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGG 299
V+ +T + A+ +L++ GR T L LE +G+ D G I +
Sbjct: 253 ---LVEHDDNGFVLTTGHG--ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP 307
Query: 300 QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVAS 359
+TS IYA GD P + A G ++G ++ +P+V++T P+VA+
Sbjct: 308 AMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVAT 367
Query: 360 IGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAG 419
+G +E + RA + DGF+K++A E + ++ G I+ G
Sbjct: 368 VGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGG 427
Query: 420 EMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456
E+I AA+ + + E+LA + TM E ++ A
Sbjct: 428 ELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCA 464
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 188 bits (480), Expect = 2e-48
Identities = 135/474 (28%), Positives = 222/474 (46%), Gaps = 47/474 (9%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNK-VAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSH 61
YD+ ++G G +I + +K +AI+EK T+GGTCLN+GCIP+K ++A+++ +
Sbjct: 2 YDLIIIG---TGSGNSILDERFADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADV-AR 56
Query: 62 IAKEAGDLGINIASCHLDLKKMMSYK----KSIVESNTQGINFLLKKNKIIT-YHGSARI 116
+EA LG++ + ++S I G + + I Y G AR
Sbjct: 57 TIREAARLGVDAELDGVRWPDIVSRVFGRIDPIAAG---GEEYRGRDTPNIDVYRGHARF 113
Query: 117 VSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKN 176
+ + E I A +VIA GS +P + D + S T + +P++
Sbjct: 114 IGPKTLRT---GDGEEITADQVVIAAGSRPV-IPPVIADSGVRYHTSDT-IMRLPELPES 168
Query: 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNS 236
L+++G G I E V++ LG V ++ SG +L +D +I+ ++ SK+ + +L
Sbjct: 169 LVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKR-WDVRLGR 227
Query: 237 KVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIE 296
V V + V R D + EAD +LVA GR P L G+++D G +
Sbjct: 228 NVVGVSQDGS--GVTLRLDDGSTV--EADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVV 283
Query: 297 IGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAV-------AEIISGQKGHVNYGIIPS 349
+ +TS ++A+GDV L H A E V ++I+ ++ +P+
Sbjct: 284 VDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIA-----SDHRFVPA 338
Query: 350 VVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFS--ANGRARSMNSIDGFVKILANEKSDR 407
V+THP++AS+G TE + + V + A G A M GFVK++A+ + R
Sbjct: 339 AVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWA--MEDTTGFVKLIADRDTGR 396
Query: 408 VEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLAR----ICHAHPTMSEAVREAAL 457
+ G HIIG A +I M FG + ++AR I HP + E V A L
Sbjct: 397 LLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWI---HPALPEVVENALL 447
>gnl|CDD|162359 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 183 bits (465), Expect = 1e-46
Identities = 129/472 (27%), Positives = 220/472 (46%), Gaps = 36/472 (7%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT--------YGGTCLNIGCIPSKALLH 54
YD+ V+GGG G A A +AA KV +++ GGTC+N+GCIP K L+H
Sbjct: 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKK-LMH 61
Query: 55 ASEMYSHIAKEAGDLGIN-IASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS 113
+ + K++ + G N + D ++ ++ + S G L++ K+ +
Sbjct: 62 QAALLGQALKDSRNYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY 121
Query: 114 ARIVSNNKI-LVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSF 170
A V ++I E+ A+ +IATG G+PG +++ ++S S
Sbjct: 122 AEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPG-----AKELCITSDDLFSL 176
Query: 171 SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGM 230
P LV+GA + LE +G V ++ S +L G D++ A + M + G+
Sbjct: 177 PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDCANKVGEHMEEHGV 235
Query: 231 NFQLNSKVSSVKKVKGKAQVVYRSTD-DEPINIEADAVLVAAGRRPYTKGLGLEEIGINI 289
F+ V++++ K V TD I E D VL+A GR T+ L LE +G+ I
Sbjct: 236 KFKRQFVPIKVEQIEAK--VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKI 293
Query: 290 DHR-GCIEIGGQFQTSISTIYAIGDVVRG-PMLAHKAEDEGIAVAE-IISGQKGHVNYGI 346
+ + G I + QT++ IYA+GD++ L A G +A+ + SG +Y
Sbjct: 294 NKKTGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYEN 353
Query: 347 IPSVVYTHPEVASIGKTEEQL--KCEKKSYKV-----GKFPFSANGRARSMNSIDGFVKI 399
+P+ V+T E + G +EE+ K +++ +V ++ R NS + K
Sbjct: 354 VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRD---NSNKCYAKA 410
Query: 400 LANEK-SDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
+ N K ++RV G H++G +AGE+ A + G + +DL HP +E
Sbjct: 411 VCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAE 462
>gnl|CDD|178123 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 175 bits (446), Expect = 2e-44
Identities = 131/469 (27%), Positives = 221/469 (47%), Gaps = 38/469 (8%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIE---------KEKTYGGTCLNIGCIPSKALL 53
+D+ V+G G G A +A KV I E GGTC+ GC+P K L+
Sbjct: 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILV 85
Query: 54 HASEMYSHIAKEAGDLGINI-ASCHLDLKKMMSYK-KSIVESNTQGI-NFLLKKNKIITY 110
+ + + ++A + G I + KK++ K I+ N GI LL + Y
Sbjct: 86 YGA-TFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLN--GIYKRLLANAGVKLY 142
Query: 111 HGSARIVSNNKI-LVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGA 167
G +IV N++ + + ++ AK+I+IATGS A +PG +++ ++S A
Sbjct: 143 EGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPG------KELAITSDEA 196
Query: 168 LSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK 227
LS +PK +V+G G I +E S+W +G+ V + L G D E+ A + +
Sbjct: 197 LSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEG 256
Query: 228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGI 287
+G+N + ++ + K +G +V D AD VL A GR P TK L LE +G+
Sbjct: 257 RGINLHPRTNLTQLTKTEGGIKV----ITDHGEEFVADVVLFATGRAPNTKRLNLEAVGV 312
Query: 288 NIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAE-IISGQKGHVNYGI 346
+D G +++ +T+I +I+AIGDV L A EG A+ + GQ +Y
Sbjct: 313 ELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYEN 372
Query: 347 IPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDG-----FVKILA 401
+ V+ P ++ +G +EE+ + K + F S N N+I G +K++
Sbjct: 373 VACAVFCIPPLSVVGLSEEEAVEQAKG-DILVFTSSFNPMK---NTISGRQEKTVMKLIV 428
Query: 402 NEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
+ ++D+V G + G A E++ AV ++ G + HP+ +E
Sbjct: 429 DAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAE 477
>gnl|CDD|181141 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 175 bits (446), Expect = 2e-44
Identities = 130/461 (28%), Positives = 226/461 (49%), Gaps = 17/461 (3%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
+ ++GGGP GY A+ AAQL V +IE++ GG + C+PSK L+ +E+ + +
Sbjct: 4 IVIIGGGPGGYEAALVAAQLGADVTVIERDGL-GGAAVLTDCVPSKTLIATAEVRT-ELR 61
Query: 65 EAGDLGINIAS---CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARI----V 117
A +LGI +DL + + K++ + + I L++ + G R+ +
Sbjct: 62 RAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGL 121
Query: 118 SNNKILVK-GSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKN 176
+++ V EET++A ++IATG+ LP D + I++ +P++
Sbjct: 122 GPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGER--ILTWRQLYDLDELPEH 179
Query: 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNS 236
L+V+G+GV G E S +T LG V ++ +L G D + A ++ +++GM S
Sbjct: 180 LIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRS 239
Query: 237 KVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIE 296
+ SV++ VV TD +E L+A G P T GLGLEE G+ + G I
Sbjct: 240 RAESVERTGDG--VVVTLTDGR--TVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHIT 295
Query: 297 IGGQFQTSISTIYAIGDVVRGPMLAHKAEDEG-IAVAEIISGQKGHVNYGIIPSVVYTHP 355
+ +TS+ IYA GD LA A +G IA+ + + + S V+T P
Sbjct: 296 VDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRP 355
Query: 356 EVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIG 415
E+A++G ++ + + + P + N RA+ DGFVK+ + V G ++
Sbjct: 356 EIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVA 415
Query: 416 GSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456
A E+I A+ ++ + +DLA+ +P++S ++ EAA
Sbjct: 416 PRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAA 456
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 169 bits (429), Expect = 2e-42
Identities = 130/524 (24%), Positives = 224/524 (42%), Gaps = 93/524 (17%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
MVYD+ V+GGG G A A +AA+ K KVA++EK+ GGTC+N+GC+P K + +A+ ++
Sbjct: 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHD 105
Query: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
I + + G + +L ++ + + LKK+ + + G ++S N
Sbjct: 106 -ILENSRHYGFDTQFS-FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSEN 163
Query: 121 KILVKGSSSE-------------------------ETIEAKNIVIATGSEASGLPGMSID 155
++L+K S + IE KNI+IA G++ +
Sbjct: 164 QVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPDVKGKE 223
Query: 156 FDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDK 215
F +SS K + + G+G I +EL +V RLG+ I +L D+
Sbjct: 224 F----TISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDE 278
Query: 216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRP 275
I M K +N ++ V ++KVK K +Y S D D V+ GR P
Sbjct: 279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLS--DGRKYEHFDYVIYCVGRSP 336
Query: 276 YTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVV------------------RG 317
T+ L L+ + I +G I++ +TS+ IYA+GD
Sbjct: 337 NTEDLNLKALNI-KTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEE 395
Query: 318 PMLAHKAEDEG------------IAVAEIISGQ-----KGHVNYGIIPSVVYTHPEVASI 360
P L K G I +++ + NY +IPSV+++HP + +I
Sbjct: 396 PYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTI 455
Query: 361 GKTEEQL--KCEKKSYKVGKFPFSANGRARSMNSIDG------------FVKILANEKSD 406
G +E++ K++ K+ +R N ++K++ K +
Sbjct: 456 GLSEQEAIDIYGKENVKI--------YESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEE 507
Query: 407 RVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
++G+HI+G +A E++ AV ++ + D HPT +E
Sbjct: 508 LIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAE 551
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 167 bits (424), Expect = 7e-42
Identities = 134/465 (28%), Positives = 224/465 (48%), Gaps = 27/465 (5%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNK-VAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSH 61
YD+ ++G G +I + +K +AI+EK T+GGTCLN+GCIP+K ++A+E+ +
Sbjct: 3 YDLIIIGTGSGN---SIPDPRFADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEV-AQ 57
Query: 62 IAKEAGDLGINIASCHLDLKKMMS--YKKSIVESNTQGINFLL--KKNKIITYHGSARIV 117
E+ LGI+ + ++S + I G ++ + I Y G AR V
Sbjct: 58 SIGESARLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV 117
Query: 118 SNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNL 177
+ L G E I IVIA GS +P D + + + +P++L
Sbjct: 118 GP-RTLRTGDG--EEITGDQIVIAAGSRPY-IPPAIADSGVRYHTNED-IMRLPELPESL 172
Query: 178 LVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK 237
+++G G I E V++ LG+ V I+ S +L +D++I+ +I K+ + +L
Sbjct: 173 VIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKK-WDIRLGRN 231
Query: 238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI 297
V++V++ V + DD + AD +LVA GR P L E G+ +D G I++
Sbjct: 232 VTAVEQ---DGDGVTLTLDDGS-TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKV 287
Query: 298 GGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHV--NYGIIPSVVYTHP 355
+TS ++A+GDV L H A E V + + +PS V+THP
Sbjct: 288 DEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHP 347
Query: 356 EVASIGKTEEQLKCEKK--SYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHI 413
++A++G TE++ + + K+ + A G A M GF K++A+ + ++ G HI
Sbjct: 348 QIATVGLTEQEAREAGHDITVKIQNYGDVAYGWA--MEDTTGFCKLIADRDTGKLLGAHI 405
Query: 414 IGGSAGEMIHEAAVLMEFGGSSEDLARICH-AHPTMSEAVREAAL 457
IG A +I M FG + ++AR + HP + E V A L
Sbjct: 406 IGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALL 450
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 165 bits (420), Expect = 2e-41
Identities = 133/484 (27%), Positives = 223/484 (46%), Gaps = 51/484 (10%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT--------YGGTCLNIGCIPSKALLH 54
YD+ V+GGG G A A +AA KVA+ + K GGTC+N+GC+P K + +
Sbjct: 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHY 65
Query: 55 ASEMYSHIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFL----LKKNKIITY 110
A+ + S ++ G +S + K++ + V+++ + +NF L+ +K+
Sbjct: 66 AANIGSIFHHDSQMYGWKTSSSF-NWGKLV----TTVQNHIRSLNFSYRTGLRSSKVEYI 120
Query: 111 HGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD--EQVIVSSTGAL 168
+G A++ + + +S EETI AK I+IATG G P + D ++ ++S
Sbjct: 121 NGLAKLKDEHTVSYGDNSQEETITAKYILIATG----GRPSIPEDVPGAKEYSITSDDIF 176
Query: 169 SFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ 228
S S P L++GA IGLE LG V + S L G D++ + ++ M +Q
Sbjct: 177 SLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQ 235
Query: 229 GMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGIN 288
G F +++K+ K +V++ E D VL A GR+P KGL L IG++
Sbjct: 236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTE----LFDTVLYATGRKPDIKGLNLNAIGVH 291
Query: 289 IDHRGCIEIGGQFQTSISTIYAIGDVVRG-PMLAHKAEDEGIAVA-EIISGQKGHVNYGI 346
++ I I T+I I+A+GDVV G P L A GI +A + ++Y
Sbjct: 292 VNKSNKI-IAPNDCTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTF 350
Query: 347 IPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANG------------RARSMNSID 394
IP+ ++T E + G + E + + ++ N RAR + D
Sbjct: 351 IPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERAR-KDEYD 409
Query: 395 GFVK-------ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPT 447
V + + ++V G H +G +AGE+ ++ ++ G D + HPT
Sbjct: 410 FDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPT 469
Query: 448 MSEA 451
+E
Sbjct: 470 DAEV 473
>gnl|CDD|130490 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 163 bits (413), Expect = 1e-40
Identities = 123/478 (25%), Positives = 218/478 (45%), Gaps = 44/478 (9%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQL-KNKVAIIEKEKTYG--------GTCLNIGCIPSKAL 52
+D+ V+G G G AA L K +VA+I+ + +G GTC+N+GC+P K +
Sbjct: 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLM 62
Query: 53 LHASEMYSHIAKEAG-DLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYH 111
+ ++ + + AG + +S + K +++ K V + + + +T+
Sbjct: 63 VTGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFF 122
Query: 112 -GSARIVSNNKILVK-----GSSSEETIEAKNIVIATGS--EASGLPGMSIDFDEQVIVS 163
G + N +LV+ S+ +E ++A++I++ATGS + G+PG E I S
Sbjct: 123 LGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIPG-----IEHCI-S 176
Query: 164 STGALSFSSVPKNLLVIGAGVIGLELGSV---WTRLGSCVKIIEHSGTILNGMDKEIAAH 220
S A P+ +L +G G I +E + + G V + + IL G D +
Sbjct: 177 SNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKE 236
Query: 221 CLKIMSKQGMNFQLNSKVSSVKK-VKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG 279
K + G+N N + V G V + S ++ D V++A GR P T+
Sbjct: 237 LTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKT----LDVDVVMMAIGRVPRTQT 292
Query: 280 LGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK 339
L L+++G+ + +G I++ +T++ IYAIGDV ML A +EG A + + G K
Sbjct: 293 LQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNK 352
Query: 340 GH-VNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDG--- 395
++ + S V++ P + + G EE + + V + F+ M++I G
Sbjct: 353 PRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTP-----LMHNISGSKY 407
Query: 396 ---FVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
KI+ N V GVH++G S+ E+I + ++ D HPT +E
Sbjct: 408 KKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAE 465
>gnl|CDD|178161 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 156 bits (396), Expect = 1e-38
Identities = 132/462 (28%), Positives = 216/462 (46%), Gaps = 29/462 (6%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIE-------KEKT--YGGTCLNIGCIPSKALL 53
+D+ +G G G + A+ A+ E + GGTC+ GC+P K L+
Sbjct: 80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLV 139
Query: 54 HASEMYSHIAKEAGDLGINIAS--CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYH 111
+AS+ YSH +E+ G + H D +++ K + ++ T +LK +
Sbjct: 140 YASK-YSHEFEESRGFGWKYETEPKH-DWNTLIANKNAELQRLTGIYKNILKNAGVTLIE 197
Query: 112 GSARIVSNNKILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALS 169
G +IV + + V G + A+NI+IA G +PG+ E I S AL
Sbjct: 198 GRGKIVDPHTVDVDG----KLYTARNILIAVGGRPFIPDIPGI-----EHAI-DSDAALD 247
Query: 170 FSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQG 229
S P+ + ++G G I LE ++ L S V + +L G D+E+ + MS +G
Sbjct: 248 LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRG 307
Query: 230 MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI 289
+ F +++ S +K + T+ + V+ A GR+P TK LGLEE+G+ +
Sbjct: 308 IEF--HTEESPQAIIKSADGSLSLKTNKGTVE-GFSHVMFATGRKPNTKNLGLEEVGVKM 364
Query: 290 DHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISG-QKGHVNYGIIP 348
D G IE+ +TS+ +I+A+GDV L A EG A+A+ + G + +Y +P
Sbjct: 365 DKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVP 424
Query: 349 SVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRV 408
S V++ P + +G TEEQ E V F S F+K++ K+++V
Sbjct: 425 SAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKV 484
Query: 409 EGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450
GVH+ G A E+I AV ++ G + D HPT +E
Sbjct: 485 LGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAE 526
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol.
Length = 427
Score = 89.4 bits (222), Expect = 2e-18
Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 30/282 (10%)
Query: 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGMNF 232
+N+++IG G IG+E+ G V +I S ILN D+E+ + + K +N
Sbjct: 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINL 196
Query: 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR 292
+LN +V S++ + + +V T AD V++A G +P ++ ++ G+ +
Sbjct: 197 RLNEEVDSIEG-EERVKVF---TSGGVYQ--ADMVILATGIKPNSELA--KDSGLKLGET 248
Query: 293 GCIEIGGQFQTSISTIYAIGDV-------VRGPM---LAHKAEDEGIAVAEIISGQ---- 338
G I + +FQTS+ IYA GDV + P LA A G E I+G
Sbjct: 249 GAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIEF 308
Query: 339 KGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSM-NSIDGFV 397
KG + I T +AS G TE + K K + A A + +
Sbjct: 309 KGVLGTNITKFFDLT---IASTGVTENEAK--KLNIDYKTVFVKAKTHANYYPGNSPLHL 363
Query: 398 KILANEKSDRVEGVHIIGG-SAGEMIHEAAVLMEFGGSSEDL 438
K++ + + R+ G +G A + I A + G + +DL
Sbjct: 364 KLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDL 405
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 78.4 bits (194), Expect = 4e-15
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 11/150 (7%)
Query: 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGMNFQ 233
+ +LV+G G+IG EL R G V +++++ ++L M E+++ +++ G++
Sbjct: 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLL 201
Query: 234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRG 293
L S++ ++K R+T D +IE DAV+ AAG RP T L G+ + +RG
Sbjct: 202 LKSQLQGLEKTDSG----IRATLDSGRSIEVDAVIAAAGLRPNT-ALA-RRAGLAV-NRG 254
Query: 294 CIEIGGQFQTSISTIYAIGDV--VRGPMLA 321
I + QTS IYA+GD + G +L
Sbjct: 255 -IVVDSYLQTSAPDIYALGDCAEINGQVLP 283
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 75.5 bits (186), Expect = 2e-14
Identities = 84/259 (32%), Positives = 114/259 (44%), Gaps = 32/259 (12%)
Query: 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGMNFQ 233
KN+++IGAG IGLE LG V+II+ IL DKEI + + + G+
Sbjct: 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELH 209
Query: 234 LNSKVSSV---KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINID 290
LN V S+ KV+G VV TD EAD V+VA G +P T+ LE+ G+
Sbjct: 210 LNEFVKSLIGEDKVEG---VV---TDKG--EYEADVVIVATGVKPNTE--FLEDTGLKTL 259
Query: 291 HRGCIEIGGQFQTSISTIYAIGD-------VVRGPM---LAHKAEDEGIAVAEIISGQ-- 338
G I + +TSI IYA GD V + LA A G V E ++G+
Sbjct: 260 KNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHV 319
Query: 339 --KGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGF 396
KG + I + E A G TEE+ K YK F N D +
Sbjct: 320 SFKGTLGSACIKVLDL---EAARTGLTEEEAKKLGIDYKT-VFIKDKNHTNYYPGQEDLY 375
Query: 397 VKILANEKSDRVEGVHIIG 415
VK++ + + G IIG
Sbjct: 376 VKLIYEADTKVILGGQIIG 394
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 72.9 bits (179), Expect = 2e-13
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 37/290 (12%)
Query: 103 KKNKII---TYHGSARI-VSNNKILVKGSSSEETIEAK--NIVIATGSEASGLPGMS-ID 155
K I TYH I + V + E E ++++ G+ A+ L S I
Sbjct: 68 YDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDIT 127
Query: 156 FDEQVIVSSTGALSF--SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM 213
F + + + F ++ LV+GAG I LE+ G +I S I M
Sbjct: 128 FTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM 187
Query: 214 DKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273
D ++ L + K+ + ++LN ++ ++ +V ++S E D ++ G
Sbjct: 188 DADMNQPILDELDKREIPYRLNEEIDAING----NEVTFKSGKVE----HYDMIIEGVGT 239
Query: 274 RPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM----------LAHK 323
P +K + E I +D +G I + +F+T++ IYAIGD++ LA
Sbjct: 240 HPNSKFI--ESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWG 297
Query: 324 AEDEGIAVAEIISGQ-----KGHVNYGIIPSVVYTHPEVASIGKTEEQLK 368
A VAE I+G KG + I+ YT AS+G +LK
Sbjct: 298 AHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT---FASVGVKPNELK 344
>gnl|CDD|162288 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(PFAM:PF00070).
Length = 300
Score = 63.8 bits (156), Expect = 1e-10
Identities = 83/344 (24%), Positives = 133/344 (38%), Gaps = 56/344 (16%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YDV ++G GPAG AI AA+ K IIE GG L +E+ ++
Sbjct: 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEG-MEPGG-----------QLTTTTEVENYP 48
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
G G +L + M Q + F + I Y ++ +++
Sbjct: 49 GFPEGISG-------PELMEKMK---------EQAVKFGAE----IIYEEVIKVDLSDRP 88
Query: 123 LVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSST--GALSFSSVPKNLL 178
+ + AK ++IATG+ A G+PG V +T G F + K +
Sbjct: 89 FKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPF-FKN--KEVA 145
Query: 179 VIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKV 238
V+G G +E TR+ V ++ H +K + K + F NS V
Sbjct: 146 VVGGGDSAIEEALYLTRIAKKVTLV-HRRDKFRA-EKILLDRLRK---NPNIEFLWNSTV 200
Query: 239 SSVKKVKGKAQV----VYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGC 294
K++ G +V + + E ++ D V +A G P T+ L + +D G
Sbjct: 201 ---KEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL---LELDEGGY 254
Query: 295 IEIGGQFQTSISTIYAIGDVV-RGPMLAHKAEDEG-IAVAEIIS 336
I +TS+ ++A GDV +G A A +G IA
Sbjct: 255 IVTDEGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit.
Length = 785
Score = 56.4 bits (136), Expect = 1e-08
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 13/216 (6%)
Query: 104 KNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSID----FDEQ 159
K+ I Y G I + + + T+ +++ATGS LP D + +
Sbjct: 66 KHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFR 125
Query: 160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAA 219
I ++ + K VIG G++GLE LG V +I H+ ++ + A
Sbjct: 126 TIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAG 185
Query: 220 HCLKIM-SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278
L+ ++G+ F L +V+ V R D ++EAD +++AAG RP +
Sbjct: 186 RLLQRELEQKGLTFLLEKD--TVEIVGATKADRIRFKDGS--SLEADLIVMAAGIRPNDE 241
Query: 279 GLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDV 314
L + GI ++ RG I + QTS IYA+G+
Sbjct: 242 -LAVSA-GIKVN-RGII-VNDSMQTSDPDIYAVGEC 273
>gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 55.8 bits (135), Expect = 3e-08
Identities = 85/411 (20%), Positives = 141/411 (34%), Gaps = 147/411 (35%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
VAV+G GPAG A A A+ + V + E+E+ GG NI IP + +E+ I
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI--IPQFRI--PAEL---IQH 594
Query: 65 EAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILV 124
+ ++ K G+ F + +T ++
Sbjct: 595 D------------IEFVK------------AHGVKFEFGCSPDLTV---------EQLKN 621
Query: 125 KGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGAL-SFSSVPKNLLVIGAG 183
+G +V+A G++ +G G+ ++ Q ++ + L + + L
Sbjct: 622 EG--------YDYVVVAIGADKNG--GLKLEGGNQNVIKALPFLEEYKNKGTAL------ 665
Query: 184 VIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKK 243
+LG V ++ T MD AA +V V+K
Sbjct: 666 -----------KLGKHVVVVGGGNT---AMDAARAA----------------LRVPGVEK 695
Query: 244 VKGKAQVVYRSTDDE-----------------------PINIEADAVLV----------A 270
V VVYR T E P + +AD L
Sbjct: 696 VT----VVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDE 751
Query: 271 AGRR-PYTKG-------------LG-------LEEIGINIDHRGCIEIGGQFQTSISTIY 309
+GRR P G +G L+ GI +D +G + +TS++ +Y
Sbjct: 752 SGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVY 811
Query: 310 AIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI 360
IGDV RGP A + A+ I ++G ++ + + E A I
Sbjct: 812 MIGDVQRGPSTIVAAIADARRAADAILSREGIRSH--QNDKYWNNVEPAEI 860
>gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 55.2 bits (134), Expect = 4e-08
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 237 KVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIE 296
KV + +G + V E + + AD VL+A G GL L + G+ +D RG +
Sbjct: 366 KVVRTELGEGDFEPV---EGSEFV-LPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVA 420
Query: 297 -IGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII 335
+QTS ++A GD+ RG L A EG A I
Sbjct: 421 APDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAI 460
Score = 37.5 bits (88), Expect = 0.008
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VAVVG GPAG A A + A+ +KV + E+ GG
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 54.0 bits (130), Expect = 8e-08
Identities = 67/332 (20%), Positives = 124/332 (37%), Gaps = 72/332 (21%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHAS--EMY 59
+YD+ ++GGGPAG + I A + K IIEK+ G + + +L+ + E+
Sbjct: 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELM 63
Query: 60 SHIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSN 119
+ ++A D G+ +++ ++F I T
Sbjct: 64 QEMRQQAQDFGVK-----------------FLQAEVLDVDF---DGDIKTIK-------- 95
Query: 120 NKILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFDEQVIVSSTGALSFSSVPKNL 177
++ + ++IATG+ G PG V +T F + ++
Sbjct: 96 --------TARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFT-GMDV 146
Query: 178 LVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK 237
VIG G E TR S V +I +E C K+++++ N + K
Sbjct: 147 FVIGGGFAAAEEAVFLTRYASKVTVIV----------REPDFTCAKLIAEKVKN---HPK 193
Query: 238 V-----SSVKKVKGKAQVVY----------RSTDDEPINIEADAVLVAAGRRPYTKGLGL 282
+ + +K+ G + Y + P + V V G P ++ L
Sbjct: 194 IEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---L 250
Query: 283 EEIGINIDHRGCIEIGGQFQTSISTIYAIGDV 314
+ + +D RG I +T++ +YA GD+
Sbjct: 251 FKGVVELDKRGYIPTNEDMETNVPGVYAAGDL 282
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 54.0 bits (130), Expect = 8e-08
Identities = 85/376 (22%), Positives = 139/376 (36%), Gaps = 103/376 (27%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
VAV+G GPAG ACA A+ +V + ++ GG
Sbjct: 144 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL------------------------ 179
Query: 65 EAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKIL- 123
L I S LD K ++S ++ I + GI F L N + R +S + +L
Sbjct: 180 ----LTFGIPSFKLD-KAVLSRRREIFTA--MGIEFHL--NCEV-----GRDISLDDLLE 225
Query: 124 ------------------VKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSST 165
+ G + ++A +IA + GLP + E+ ++
Sbjct: 226 DYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLP----ESPEEPLIDVE 281
Query: 166 GALSFSSVPKNLLVIGAGVIGLELGSVWTRLG----SCVKIIEHSGTILNGMDKEIAAHC 221
G K ++V+G G ++ RLG +C + + + G +E+A
Sbjct: 282 G--------KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN--MPGSRREVAN-- 329
Query: 222 LKIMSKQGMNFQLNSKVSSV-----KKVKGKAQVVYRSTDD--------EPIN-----IE 263
++G+ F N + + +V G V + P+ +
Sbjct: 330 ---AREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLP 386
Query: 264 ADAVLVAAGRRPYTKGLGLEEIGINIDHRGCI----EIGGQFQTSISTIYAIGDVVRGPM 319
AD V++A G +P+ L GI +D G I +QT+ I+A GD VRG
Sbjct: 387 ADVVIMAFGFQPHAMPW-LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD 445
Query: 320 LAHKAEDEGIAVAEII 335
L A EG A+ I
Sbjct: 446 LVVTAVAEGRQAAQGI 461
Score = 30.2 bits (68), Expect = 1.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 175 KNLLVIGAGVIGLELGSVWTRLGSCVKII----EHSGTILNG-----MDKEIAAHCLKIM 225
K + VIGAG GL + R G V + E G + G +DK + + +I
Sbjct: 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIF 201
Query: 226 SKQGMNFQLNSKV 238
+ G+ F LN +V
Sbjct: 202 TAMGIEFHLNCEV 214
>gnl|CDD|183734 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 51.5 bits (124), Expect = 4e-07
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 262 IEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLA 321
+EAD V+ A G P T E +GI ++ +G I + + TS ++A GDVV GP
Sbjct: 273 LEADTVVFAIGEIP-TPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKI 331
Query: 322 HKAEDEGIAVAEIIS 336
KA G+ A+ I
Sbjct: 332 GKAIKSGLRAAQSIH 346
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH.
Length = 449
Score = 50.6 bits (121), Expect = 7e-07
Identities = 76/335 (22%), Positives = 121/335 (36%), Gaps = 65/335 (19%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
VAV+G GPAG ACA + A+ + V + E GG + G IP L E+ K
Sbjct: 136 VAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGV-VTYG-IPEFRL--PKEIVVTEIK 191
Query: 65 EAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNK---IITYHGSARIVSNNK 121
LG+ L K T + L + I T G ++++
Sbjct: 192 TLKKLGVTFRMNFLVGK-------------TATLEELFSQYDAVFIGTGAGLPKLMNIPG 238
Query: 122 ILVKGS-SSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
+ G S+ + + N++ A + P K+++VI
Sbjct: 239 EELCGVYSANDFLTRANLMKAYEFPHADTP--------------------VYAGKSVVVI 278
Query: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQ-LNSKVS 239
G G ++ RLG+ V + E AH ++G+ F L V
Sbjct: 279 GGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAH----AEEEGVKFHFLCQPVE 334
Query: 240 SVKKVKGKAQ-VVYRSTD----------------DEPINIEADAVLVAAGRRPYTKGLGL 282
+ +G + V +R D D +EADAV+VA G +
Sbjct: 335 IIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGS--NPIMA 392
Query: 283 EEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG 317
E + RG I + +TSI ++A GD++ G
Sbjct: 393 ETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILG 427
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 50.3 bits (120), Expect = 9e-07
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-GMDKEIAAHCLKIMSKQGMNFQ 233
++++++GAG IGLEL + T+ V +IE + T++ + + L+ + G+
Sbjct: 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRIL 204
Query: 234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRG 293
LN+ + V V G+ + + + ++AD V+ G L E N+D
Sbjct: 205 LNNAIEHV--VDGEKVELTLQSGE---TLQADVVIYGIGIS-ANDQLAREA---NLDTAN 255
Query: 294 CIEIGGQFQTSISTIYAIGDV 314
I I +T I+A GDV
Sbjct: 256 GIVIDEACRTCDPAIFAGGDV 276
Score = 29.9 bits (67), Expect = 1.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41
V +VG G G A A Q + KV +IE T G
Sbjct: 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183
>gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 46.0 bits (110), Expect = 2e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAII 31
M +DV V+GGG AG A+ AA+ +VA++
Sbjct: 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALV 31
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 44.7 bits (106), Expect = 5e-05
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
DV V+G G AG + A+ AA KV ++EK+ +GGT
Sbjct: 13 CDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 44.0 bits (104), Expect = 8e-05
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 257 DEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF-QTSISTIYAIGDVV 315
E +++ AD V+ A G + T L ++ GI +D G + +T+I+ ++ IGD
Sbjct: 758 GETVDLPADTVIAAVGEQVDTDLL--QKNGIPLDEYGWPVVNQATGETNITNVFVIGDAN 815
Query: 316 RGPMLAHKAEDEGIAVAEII---SGQKGHVN 343
RGP +A +G A I G V+
Sbjct: 816 RGPATIVEAIADGRKAANAILSREGLNSDVD 846
Score = 40.5 bits (95), Expect = 8e-04
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK 64
VAV+G GPAG + A+ + V + EK++ GG NI IP + ++E +
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI--IPEFRI--SAESIQKDIE 595
Query: 65 EAGDLGINI 73
G+
Sbjct: 596 LVKFHGVEF 604
>gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae.
Length = 400
Score = 43.7 bits (104), Expect = 9e-05
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 31/166 (18%)
Query: 6 AVVGGGPAGYACAIKAAQLKNKVAIIEKEK--------TYGGTCLNI--GCIPSKALLHA 55
++GGG AG AI AA+ V ++EK K + GG C N+ C + + +
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRC-NLTNSCPTPEFVAYY 59
Query: 56 SE----MYSHIAK-EAGDLGINIASCH-LDLK-----KM--MSYKKSIVESNTQGINFLL 102
+ S +++ DL I+ L+LK ++ S + V + L
Sbjct: 60 PRNGKFLRSALSRFSNKDL-IDFFESLGLELKVEEDGRVFPCSDSAADV---LDALLNEL 115
Query: 103 KKN--KIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA 146
K+ +I+T I ++ +S E EA +++ATG +
Sbjct: 116 KELGVEILTNSKVKSIKKDDNGFGVETSGGE-YEADKVILATGGLS 160
Score = 29.1 bits (66), Expect = 2.6
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 204 EHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIE 263
+ + +L+ + E+ + G+ NSKV S+KK V T E
Sbjct: 102 DSAADVLDALLNELK--------ELGVEILTNSKVKSIKKDDNGFGV---ETSGG--EYE 148
Query: 264 ADAVLVAAGRRPYTKGLG--------LEEIGINI 289
AD V++A G Y + LG E +G I
Sbjct: 149 ADKVILATGGLSYPQ-LGSTGDGYEIAESLGHTI 181
>gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 43.5 bits (103), Expect = 1e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
+ DV V+G G G + AI A +L V ++EKE +GGT
Sbjct: 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47
>gnl|CDD|183296 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 43.6 bits (104), Expect = 1e-04
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 262 IEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIG-GQFQTSISTIYAIGDVVRG 317
+ AD V+ A G+ P L G+ ++ G I +TS+ ++A GD+V G
Sbjct: 374 LPADLVIKAIGQTPNPLILSTTP-GLELNRWGTIIADDETGRTSLPGVFAGGDIVTG 429
Score = 38.6 bits (91), Expect = 0.004
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPS 49
VAV+G GPAG A + A+ V I E GG L IP
Sbjct: 143 VAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG--LLRYGIPE 185
>gnl|CDD|132421 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase.
Length = 419
Score = 43.1 bits (102), Expect = 2e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAII 31
+DV ++GGG AG +CA++ A+ K AII
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAII 29
>gnl|CDD|163151 TIGR03140, AhpF, alkyl hydroperoxide reductase, F subunit. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Length = 515
Score = 42.7 bits (101), Expect = 2e-04
Identities = 82/327 (25%), Positives = 138/327 (42%), Gaps = 60/327 (18%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YDV VVGGGPAG A AI AA+ + A++ + GG + I + S Y+
Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIEN----LISVPYTTG 266
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKI 122
++ A +L +I +DL + K KI T G + +
Sbjct: 267 SQLAANLEEHIKQYPIDLMENQRAK------------------KIETEDGLIVVTLESG- 307
Query: 123 LVKGSSSEETIEAKNIVIATGSE--ASGLPGMSIDFDEQVIVSSTGALSFSSVP----KN 176
E ++AK++++ATG+ G+PG +++ I P K+
Sbjct: 308 --------EVLKAKSVIVATGARWRKLGVPG-----EKEYIGKGVAYCPHCDGPFFKGKD 354
Query: 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCL--KIMSKQGMNFQL 234
+ VIG G G+E I+ H T+L D+ A L K+ S ++
Sbjct: 355 VAVIGGGNSGIEAAI------DLAGIVRHV-TVLEFADELKADKVLQDKLKSLPNVDILT 407
Query: 235 NSKVSSVKKVKGKAQ-VVY--RSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH 291
+++ + + K + Y R++ +E ++ D V V G P T+ L + + ++
Sbjct: 408 SAQTTEIVGDGDKVTGIRYQDRNSGEEK-QLDLDGVFVQIGLVPNTEWL---KDAVELNR 463
Query: 292 RGCIEIGGQFQTSISTIYAIGDVVRGP 318
RG I I + +TS+ I+A GDV P
Sbjct: 464 RGEIVIDERGRTSVPGIFAAGDVTTVP 490
>gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 42.5 bits (101), Expect = 2e-04
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
DVA+VG GP+G A A+ KVA+ E++ ++GG
Sbjct: 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62
>gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 41.9 bits (99), Expect = 4e-04
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
YDV VVG G AG A+ AA ++EK YGG+
Sbjct: 8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45
>gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 41.1 bits (97), Expect = 6e-04
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
M D+ VVG GPAG + A A KV +IE+
Sbjct: 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIER 34
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 41.2 bits (96), Expect = 6e-04
Identities = 77/352 (21%), Positives = 129/352 (36%), Gaps = 69/352 (19%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSK----ALLHASEMYS 60
VAV+G GPAG CA A+ +V + ++ GG L G P K L E+++
Sbjct: 313 VAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-LTFGIPPFKLDKTVLSQRREIFT 371
Query: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
+GI+ HL+ + S + S + F+ + TY
Sbjct: 372 -------AMGIDF---HLNCEIGRDITFSDLTSEYDAV-FI----GVGTY-------GMM 409
Query: 121 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
+ + + I+A + A + GLP + +E + G K ++V+
Sbjct: 410 RADLPHEDAPGVIQALPFLTAHTRQLMGLP----ESEEYPLTDVEG--------KRVVVL 457
Query: 181 GAGVIGLELGSVWTRLG--SCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKV 238
G G ++ RL S + G KE+ ++G+ FQ N +
Sbjct: 458 GGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVN-----AREEGVEFQFNVQP 512
Query: 239 SSV-KKVKGKAQVV--YRSTDDEP---------------INIEADAVLVAAGRRPYTKGL 280
+ G+ V R+ EP + AD +++A G + +
Sbjct: 513 QYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW 572
Query: 281 GLEEIGINIDHRGCIEIGGQ----FQTSISTIYAIGDVVRGPMLAHKAEDEG 328
L+ GI +D G I+ G QT + ++A GD V G L A G
Sbjct: 573 -LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAG 623
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 40.9 bits (96), Expect = 7e-04
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 264 ADAVLVAAGRRPYTKGLGLEEIGINIDHRGCI----EIGGQFQTSISTIYAIGDVVRGPM 319
ADAV++A G P+ LE G+ +D G I E ++QTS I+A GD VRG
Sbjct: 573 ADAVIMAFGFNPHGM-PWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD 631
Query: 320 LAHKAEDEGIAVAEII 335
L A EG A+ I
Sbjct: 632 LVVTAMAEGRHAAQGI 647
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 5 VAVVGGGPAGYACA 18
VA++G GPAG ACA
Sbjct: 330 VAIIGAGPAGLACA 343
Score = 29.7 bits (67), Expect = 1.7
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 171 SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKII----EHSGTILNG-----MDKEIAAHC 221
+ K + +IGAG GL V R G V + E G + G +DK + A
Sbjct: 324 TKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARR 383
Query: 222 LKIMSKQGMNFQLNSKV 238
+I S G+ F+LN +V
Sbjct: 384 REIFSAMGIEFELNCEV 400
>gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4, ) and UbiF (which acts at position 5). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF.
Length = 385
Score = 40.7 bits (96), Expect = 8e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
D+ +VGGG G A A+ A+ K+A+IE
Sbjct: 1 DIVIVGGGMVGLALALALARSGLKIALIEA 30
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 40.9 bits (96), Expect = 8e-04
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 179 VIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-NGMDKEIAAHCLKIMSKQGMNFQLNSK 237
V+G G++GLE LG +IE + ++ +D+ + + G+ +
Sbjct: 150 VVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKN 209
Query: 238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI 297
+ + +A+ R D +E D ++ + G RP K L + G+ + RG I I
Sbjct: 210 TLEIVQEGVEARKTMRFADGS--ELEVDFIVFSTGIRPQDK-LA-TQCGLAVAPRGGIVI 265
Query: 298 GGQFQTSISTIYAIGD 313
QTS IYAIG+
Sbjct: 266 NDSCQTSDPDIYAIGE 281
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 40.5 bits (95), Expect = 0.001
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 173 VPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAAHCLKIM--SKQG 229
+P++L+VIG G + +++ RL + T L +E+ A +I ++G
Sbjct: 417 IPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEEG 476
Query: 230 MNFQL----------NSKVSSVKKVK--------GKAQVVYRSTDDEPINIEADAVLVAA 271
+ N KV VK K G+ + +D I +EAD V+ A
Sbjct: 477 VVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQ--IIVEADMVVEAI 534
Query: 272 GRRPYTKGLGLEEIGINID-HRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIA 330
G+ P L EE+ ++ RG I QTSI ++A GD+V GP + H D G
Sbjct: 535 GQAPDYSYLP-EELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPDIIHGVAD-GYW 592
Query: 331 VAEII 335
AE I
Sbjct: 593 AAEGI 597
Score = 30.9 bits (70), Expect = 0.75
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKAL 52
VA+VG GPAG + A A + +V + E GG + G IPS L
Sbjct: 286 VAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGV-MRYG-IPSYRL 331
>gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 40.2 bits (94), Expect = 0.001
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
YDV VVG G G + A+ AA KV ++EK T GG
Sbjct: 9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45
>gnl|CDD|161671 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. The gene
is known as glf, ceoA, and rfbD. It is known
experimentally in E. coli, Mycobacterium tuberculosis,
and Klebsiella pneumoniae.
Length = 377
Score = 39.8 bits (93), Expect = 0.001
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41
+D +VG G +G A AQL +V ++EK GG C
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40
>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 39.9 bits (94), Expect = 0.002
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VAV+GGGPAG + A ++ + V I E GG
Sbjct: 140 VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
Score = 32.5 bits (75), Expect = 0.21
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 245 KGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQ-T 303
G+ V E +EAD V++A G+ GLE + RG +++ F T
Sbjct: 354 DGRPSPV----TGEEETLEADLVVLAIGQD--IDSAGLESVPGVEVGRGVVQVDPNFMMT 407
Query: 304 SISTIYAIGDVVRGPMLAHKA 324
++A GD+V GP A
Sbjct: 408 GRPGVFAGGDMVPGPRTVTTA 428
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 39.4 bits (92), Expect = 0.002
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIE 32
YD+AVVGGG G A A+ A+ VA+IE
Sbjct: 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIE 33
>gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 39.3 bits (92), Expect = 0.002
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 262 IEADAVLVAAGRRP------YTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVV 315
++ D V+V+ G P GL L + +G I + + Q+SI IYA GD+V
Sbjct: 673 VDVDLVIVSVGVSPNPLVPSSIPGLEL-------NRKGTIVVDEEMQSSIPGIYAGGDIV 725
Query: 316 RG 317
RG
Sbjct: 726 RG 727
Score = 30.9 bits (70), Expect = 0.76
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VAV+G GPAG + A A+ V + E GG
Sbjct: 434 VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG 468
>gnl|CDD|163170 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 39.2 bits (92), Expect = 0.002
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 35/172 (20%)
Query: 174 PKNLLVIGAGVIGLEL-GSVWTRLGS-----CVKIIEHSGTILNGMDKEIAAHCLKIMSK 227
K L V+G G G+E+ ++ RL V +I ++L G ++ L+++++
Sbjct: 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLPGFPAKVRRLVLRLLAR 203
Query: 228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGI 287
+G+ + V+ + + ADA+L A G R L E G+
Sbjct: 204 RGIEVHEGAPVTRGPD--------GALILADGRTLPADAILWATGARAPP---WLAESGL 252
Query: 288 NIDHRGCIEIGGQFQT-SISTIYAIGDV---------------VR-GPMLAH 322
+D G + + Q+ S ++A GD VR P+LA
Sbjct: 253 PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAA 304
>gnl|CDD|183786 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
+DV V+G G AG + A+ AA KV ++E+ + GGT
Sbjct: 17 FDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54
>gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ).
Length = 388
Score = 39.0 bits (91), Expect = 0.003
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34
YDVAV+GGGP+G A A+ + ++E+
Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 39.0 bits (91), Expect = 0.003
Identities = 50/268 (18%), Positives = 98/268 (36%), Gaps = 60/268 (22%)
Query: 99 NFLLKKNKIITYHGSARIVSNNKILVKGSSS-----EETIEAKNIV--IATGSEASGLPG 151
F + +K++ HG+ N + G +E A+ I I E + LP
Sbjct: 109 TFSVPYDKLVVAHGA----RPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPT 164
Query: 152 MSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGS------------VWTRLGSC 199
S++ +++ L F +V+G G G+E + + L
Sbjct: 165 TSVEERKRL-------LHF-------VVVGGGPTGVEFAAELADFFRDDVRNLNPELVEE 210
Query: 200 VKII--EHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDD 257
K+ E +L D+ + + + + + G++ + + V V + V +
Sbjct: 211 CKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD-----KEVVLKDGE 265
Query: 258 EPINIEADAVLVAAG--RRPYTKGLGLEEIGINIDHRGCIEIGGQFQTS-ISTIYAIGDV 314
I V+ + G P TK L +++ RG I + + I ++A+GD
Sbjct: 266 V---IPTGLVVWSTGVGPGPLTKQLKVDK-----TSRGRISVDDHLRVKPIPNVFALGDC 317
Query: 315 -----VRGPMLAHKAEDEGIAVAEIISG 337
P LA A +G+ +A+ +
Sbjct: 318 AANEERPLPTLAQVASQQGVYLAKEFNN 345
>gnl|CDD|185217 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 39.0 bits (92), Expect = 0.003
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 2 VYDVAVVGGGPAGYACAIKAA 22
YDV VVGGGPAG A AI AA
Sbjct: 211 PYDVLVVGGGPAGAAAAIYAA 231
Score = 27.8 bits (63), Expect = 6.8
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 19/80 (23%)
Query: 242 KKVKGKAQVVY--RSTDDEPINIEADAVLVAAGRRPYTKGLG----LEEIG-INIDHRGC 294
KV G + Y R+T +E ++E + V V G P T+ L L G I +D RG
Sbjct: 418 DKVTG---LTYKDRTTGEE-HHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARG- 472
Query: 295 IEIGGQFQTSISTIYAIGDV 314
TS+ ++A GD
Sbjct: 473 -------ATSVPGVFAAGDC 485
Score = 27.4 bits (62), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIE 32
VAV+GGG +G AI A + V ++E
Sbjct: 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLE 381
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 38.8 bits (91), Expect = 0.003
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34
D+A+VGGG G A A+ AQ VA++E
Sbjct: 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHA 37
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 38.6 bits (90), Expect = 0.003
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
D+AV+GGGPAG A A++ A+ +V +IE G
Sbjct: 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 38.7 bits (90), Expect = 0.003
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 237 KVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIE 296
+V K GK Q V +E EAD VL+A G + L L++ G+ RG I
Sbjct: 378 RVEWKKSQDGKWQFVEIPGSEE--VFEADLVLLAMGFVGPEQIL-LDDFGVKKTRRGNIS 434
Query: 297 IG-GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVA 332
G + TSI ++A GD RG L A +EG A
Sbjct: 435 AGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAA 471
Score = 37.5 bits (87), Expect = 0.007
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VAVVG GPAG A A + + + V + E+E GG
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180
>gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates.
Length = 295
Score = 38.1 bits (89), Expect = 0.004
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35
YDV VVG GPAG + A + A +V ++EK+
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 38.0 bits (89), Expect = 0.005
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIE 32
M +DV VVGGG G + A+ AQ +VA++
Sbjct: 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLA 35
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 37.8 bits (88), Expect = 0.006
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCL 42
DV VVG GPAG A A+ AA+ +V +++++ GG+ L
Sbjct: 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL 203
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 37.6 bits (88), Expect = 0.007
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
DV VVG G AG AI+AA +V ++E+ GG
Sbjct: 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58
>gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine.This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis.
Length = 254
Score = 37.5 bits (87), Expect = 0.007
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
DV +VG GP+G A A+ KV ++E+ +GG
Sbjct: 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58
>gnl|CDD|180899 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 37.2 bits (87), Expect = 0.009
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
+A+VGGG AG A A + A+ ++V + E + GG
Sbjct: 2 IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 37.3 bits (87), Expect = 0.009
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 32/169 (18%)
Query: 172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKI--MSKQG 229
V K + V+G G + ++ RLG+ V I+ ++E+ A ++ ++G
Sbjct: 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS------EEELPARVEEVHHAKEEG 332
Query: 230 MNFQL-----------NSKVSSVKKVKGKAQVVYRSTDDEPINI-------EADAVLVAA 271
+ F L N V +K +K + S P+ I E D V+++
Sbjct: 333 VIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL 392
Query: 272 GRRPYTKGLGLEEIGINIDHRGCI---EIGGQFQTSISTIYAIGDVVRG 317
G P + G+ I+ RGCI E G TS ++A GD V G
Sbjct: 393 GTSP-NPLISSTTKGLKINKRGCIVADEETGL--TSKEGVFAGGDAVTG 438
Score = 32.7 bits (75), Expect = 0.21
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIE 32
VAV+G GPAG CA A++ V I E
Sbjct: 143 VAVIGSGPAGLTCAGDLAKMGYDVTIFE 170
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 36.7 bits (85), Expect = 0.013
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
V VVGGG AG + AI+AA +V ++EKE GG
Sbjct: 412 VIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446
>gnl|CDD|180946 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 36.2 bits (84), Expect = 0.019
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Query: 3 YDVAVVGGGPAG--YACAIKAAQLKNKVAIIE 32
YDVA+VGGG G A A+K + L ++A+IE
Sbjct: 19 YDVAIVGGGIVGLTLAAALKDSGL--RIALIE 48
>gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 35.9 bits (83), Expect = 0.021
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG-TCLNIGCI 47
DV VVG G G A+ AA ++EK +GG T L+ G I
Sbjct: 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGI 57
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 35.9 bits (83), Expect = 0.025
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
YDV VVG G G A+ AA + I+EK+ GG+
Sbjct: 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 35.6 bits (83), Expect = 0.026
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG---GTCLNIGCIPSKALLHASEMY 59
D+AV+GGGPAG A AI A+ VA++ E Y T L PS L ++
Sbjct: 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTAL---LGPSIRFLERLGLW 64
Query: 60 SHIAKEAGDL 69
+ +A A L
Sbjct: 65 ARLAPHAAPL 74
>gnl|CDD|181124 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 35.0 bits (81), Expect = 0.039
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
YDV V+G G AG AI+A + +VA++ K
Sbjct: 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCK 39
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 34.7 bits (80), Expect = 0.055
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIE 32
V D+ VVGGGPAG A A + ++ V I+
Sbjct: 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCID 58
>gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 34.5 bits (80), Expect = 0.063
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
+ DV V+GGG A A+ A + V ++E
Sbjct: 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEA 35
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 34.0 bits (78), Expect = 0.078
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKN-KVAIIEKEKTYGG 39
DV +VG G AG +CA + ++ N KVAIIE+ + GG
Sbjct: 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130
>gnl|CDD|178083 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
Length = 627
Score = 34.0 bits (78), Expect = 0.081
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
DV VVGGG G A+ AA +V ++E+E GT
Sbjct: 72 LDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 33.9 bits (78), Expect = 0.082
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKN---KVAIIEK 33
D+ V+GGG AG AIK A+ +N +V ++EK
Sbjct: 10 TDILVIGGGTAGPMAAIK-AKERNPALRVLLLEK 42
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 33.7 bits (78), Expect = 0.092
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34
M DV VVG G AG A + A +V ++++E
Sbjct: 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQE 36
>gnl|CDD|114555 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 33.8 bits (78), Expect = 0.11
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 4 DVAVVGGGPAGYACA--IKAAQLKNKVAIIE 32
D+ +VG G AG A ++ A+ +V +I+
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLID 31
>gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 33.7 bits (78), Expect = 0.11
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG 38
V VVG GP G A AI AQ V +++ + T
Sbjct: 26 VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS 59
>gnl|CDD|181317 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 33.6 bits (77), Expect = 0.12
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35
M Y+V ++GGGP G A + A K +IE+ K
Sbjct: 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35
>gnl|CDD|181552 PRK08773, PRK08773,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Validated.
Length = 392
Score = 33.3 bits (76), Expect = 0.13
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
D +VGGG G ACA+ A VA++E
Sbjct: 8 DAVIVGGGVVGAACALALADAGLSVALVEG 37
>gnl|CDD|180885 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 33.3 bits (77), Expect = 0.14
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41
V ++G GPAG A + + V ++E + GG
Sbjct: 6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS 43
>gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in Gram-negative
bacteria, mitochondria, and some Archaea. Mitochondrial
forms interact with ubiquinone and are designated EC
1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes
in E. coli and other species run primarily in the
opposite direction and are designated fumarate
reductase.
Length = 566
Score = 33.1 bits (76), Expect = 0.15
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
DV +VG G AG A++AA+ A+I K
Sbjct: 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK 30
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 32.8 bits (75), Expect = 0.18
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 262 IEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI-GGQFQTSISTIYAIGDVVRGPML 320
++AD V+ A G+ E GI G +++ QTS++ ++A GD V G +
Sbjct: 424 LQADTVISAIGQ--QVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADI 481
Query: 321 AHKAEDEGIAVAEII 335
A A ++G A I
Sbjct: 482 AINAVEQGKRAAHAI 496
Score = 28.2 bits (63), Expect = 4.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VA++G GPAG A + + V I + + GG
Sbjct: 196 VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 32.9 bits (75), Expect = 0.18
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 262 IEADAVLVAAGR--RPYTKGLGLEEIGINIDHRGCIEIG-GQFQTSISTIYAIGDVVRGP 318
+ D V++A G P K E G+ + G IE+ G +TSI +Y+ GD RG
Sbjct: 549 VPVDLVIMALGNTANPIMKD---AEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG 605
Query: 319 MLAHKAEDEGIAVAEIISGQ 338
A +A +G A A+ I G+
Sbjct: 606 STAIRAAGDGQAAAKEIVGE 625
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 32.9 bits (75), Expect = 0.18
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASE 57
YD+ +VG G AG + AI+A I+EK GG + + + ++ASE
Sbjct: 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMK-----ASSGMNASE 111
>gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 32.7 bits (76), Expect = 0.23
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 3 YDVAVVGGGPAGYAC--AIKAAQLKNKVAII 31
YDV VVGGG AG C A+ AA++ K ++
Sbjct: 5 YDVIVVGGGHAG--CEAALAAARMGAKTLLL 33
>gnl|CDD|161923 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA.
Length = 488
Score = 32.5 bits (74), Expect = 0.25
Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 45/187 (24%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT------------------------ 36
DV V+G G AG + A+ A + +V ++ K
Sbjct: 1 HSCDVVVIGSGAAGLSAALALAD-QGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDS 59
Query: 37 ------YGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI-ASCHLDLKKMMSYKKS 89
G + + A + + + S L + SY++
Sbjct: 60 HVEDTLAAGAGICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRI 119
Query: 90 IVESNTQG---INFLLKKN------KIITYHGSARIVSNNK----ILVKGSSSEETIEAK 136
+ ++ G I L+KK +II + ++ + V + ET A
Sbjct: 120 LHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHAD 179
Query: 137 NIVIATG 143
+V+ATG
Sbjct: 180 AVVLATG 186
>gnl|CDD|162643 TIGR01989, COQ6, Ubiquinone biosynthesis mono0xygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 32.4 bits (74), Expect = 0.27
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 3 YDVAVVGGGPAG--YACAIKA-AQLKN-KVAIIE 32
+DV +VGGGP G A A+ K+ KV +++
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLD 34
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 32.1 bits (74), Expect = 0.28
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1 MVYDVAVVGGGPAGYACA--IKAAQLKNKVAIIEKE 34
+YD ++GGG G + A ++ ++A++EKE
Sbjct: 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKE 36
>gnl|CDD|181714 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 32.3 bits (74), Expect = 0.30
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 4 DVAVVGGGPAGYACAIKAAQL--KNKVAIIEK 33
D+A++G G AG AI AA+ K+A+I K
Sbjct: 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISK 37
>gnl|CDD|162543 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes
a family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble
periplasmic protein with four heme groups, a
non-covalently bound FAD, and essentially
unidirectional fumarate reductase activity. At least
seven distinct members of this family are found in
Shewanella oneidensis, a species able to use a wide
variety of pathways for respiraton.
Length = 439
Score = 31.9 bits (73), Expect = 0.31
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNK-VAIIEKEKTYGG 39
DV VVG G AG + A+ A + V ++EK GG
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG 37
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University).
Length = 1311
Score = 31.9 bits (72), Expect = 0.32
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 22/141 (15%)
Query: 251 VYRSTDDEPINIEADA---VLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSIST 307
YR D E I I +DA V + RR Y + + + +D RG G + S+
Sbjct: 1153 TYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLII 1212
Query: 308 IYAIGDVVRGP--MLA----------HKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHP 355
A+ + ++A E A+ EII + N+ + +V TH
Sbjct: 1213 RLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQL---LVITHD 1269
Query: 356 E--VASIGKTE--EQLKCEKK 372
E V +G++E E+ KK
Sbjct: 1270 EDFVELLGRSEYVEKFYRLKK 1290
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 32.1 bits (73), Expect = 0.34
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
+DV +VG G +G +++ A+ VA++ K
Sbjct: 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSK 43
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 31.9 bits (73), Expect = 0.37
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE-KTYGGTCLNIG--CIPSKALLHA---- 55
YD+ +VG G G A A AA+ V +IE+ + G + N G +A A
Sbjct: 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRA 60
Query: 56 ---SEMYSHIAKEAGDLGINIASC 76
E++ +A +A GI +
Sbjct: 61 RRSREIWLELAAKA---GIWVREN 81
>gnl|CDD|162640 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype.
Length = 382
Score = 31.9 bits (73), Expect = 0.38
Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 44/194 (22%)
Query: 4 DVAVVGGGPAGYACAIKAAQL-KNKVAIIEK------EKTYGGTCL-----------NIG 45
DV +VGGG G + A+ ++L K K+A+IE + + L +G
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLG 60
Query: 46 CIPSKALLHASEMYSHI----AKEAGDLGINIASCHLDLKKMMSYKKSIVESNT--QGIN 99
P L + I G + + L + Y +VE Q +
Sbjct: 61 LWP--KLAPFATPILDIHVSDQGHFGATHLRASEFGLP---ALGY---VVELADLGQALL 112
Query: 100 FLLKKNKIITYHGSARIVSNNKILVKGSS-----SEETIEAKNIVIATGS-----EASGL 149
L I + AR I + + + + AK ++ A G+ E +
Sbjct: 113 SRLALLTNIQLYCPARYK--EIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSI 170
Query: 150 PGMSIDFDEQVIVS 163
P D+++ +++
Sbjct: 171 PTEEHDYNQTALIA 184
>gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis.
Length = 502
Score = 31.9 bits (73), Expect = 0.39
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
V+G G G A AI+ A V ++E+ GG
Sbjct: 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 31.6 bits (72), Expect = 0.45
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGC 46
YDVA++G GPAG A A A K KV I+K+ G + C
Sbjct: 2 YDVAIIGLGPAGSALARLLA-GKMKVIAIDKKHQCGTEGFSKPC 44
>gnl|CDD|181289 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 31.5 bits (72), Expect = 0.46
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
YDV +VG G AG AI+A + + A++ K
Sbjct: 6 YDVVIVGAGGAGMRAAIEAGP-RARTAVLTK 35
>gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 31.2 bits (71), Expect = 0.56
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 3 YDVAVVGGGPAGYACAIKAAQL---KNKVAIIEK 33
YDV +VG G AG A+ AA+ K VA++ K
Sbjct: 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39
>gnl|CDD|185587 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 31.2 bits (71), Expect = 0.59
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEKTYGGTC 41
VYDV +VGGG G A ++ N K+A+IE+ +
Sbjct: 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVA 86
>gnl|CDD|181640 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 31.0 bits (71), Expect = 0.64
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
DV ++G G AG + A++ A+ +VA++ K
Sbjct: 7 HQCDVLIIGSGAAGLSLALRLAE-HRRVAVLSK 38
>gnl|CDD|162238 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate
reductase may be used interchangeably in certain
systems. However, a number of species have distinct
complexes, with the fumarate reductase active under
anaerobic conditions. This model represents the
fumarate reductase flavoprotein subunit from several
such species in which a distinct succinate
dehydrogenase is also found. Not all bona fide fumarate
reductases will be found by this model.
Length = 580
Score = 31.0 bits (70), Expect = 0.71
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKN--KVAIIEK 33
D+AV+G G AG AI AA+ VA+I K
Sbjct: 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISK 36
>gnl|CDD|184334 PRK13800, PRK13800, putative oxidoreductase/HEAT
repeat-containing protein; Provisional.
Length = 897
Score = 31.0 bits (70), Expect = 0.73
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG-------CIPSKA 51
DV V+GGG AG A+ AA+ V ++EK L +G IP KA
Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKA 69
>gnl|CDD|162325 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. Sarcosine oxidase catalyzes the
oxidative demethylation of sarcosine to glycine. The
reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 407
Score = 30.9 bits (70), Expect = 0.76
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGG-TCLNIGCIPSKALLHAS-E 57
YDV +VGGG G A A A+ VA++EK GG T N + S L S E
Sbjct: 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAE 89
Query: 58 MYSHIAK 64
+Y H K
Sbjct: 90 LYEHAMK 96
>gnl|CDD|180788 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 30.8 bits (70), Expect = 0.80
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 2 VYDVAVVGGGPAGYACA 18
+D+A+VG GP G A A
Sbjct: 11 DFDIAIVGAGPVGLALA 27
>gnl|CDD|181197 PRK08013, PRK08013, oxidoreductase; Provisional.
Length = 400
Score = 30.8 bits (70), Expect = 0.87
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 3 YDVAVVGGGPAGY--ACAIKAAQLKNKVAIIEKE 34
DV + GGG G AC ++ + L +VA++E+
Sbjct: 4 VDVVIAGGGMVGLAVACGLQGSGL--RVAVLEQR 35
>gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 30.8 bits (70), Expect = 0.91
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 231 NFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAA 271
+LN KV S+ K + T + +N+ A AV++ A
Sbjct: 253 KVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTA 293
Score = 27.7 bits (62), Expect = 6.2
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 2 VYDVAVVGGGPAGYACAIK-AAQLKNKVAIIEKEKTYGG 39
DVAVVG G +G A A A++ V + E GG
Sbjct: 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50
>gnl|CDD|181516 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 30.3 bits (69), Expect = 0.94
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAII 31
V VVGGG AG IKAA+ V +
Sbjct: 6 VIVVGGGLAGLMATIKAAEAGVHVDLF 32
>gnl|CDD|131083 TIGR02028, ChlP, geranylgeranyl reductase. This model represents
the reductase which acts reduces the geranylgeranyl
group to the phytyl group in the side chain of
chlorophyll. It is unclear whether the enzyme has a
preference for acting before or after the attachment of
the side chain to chlorophyllide a by chlorophyll
synthase. This clade is restricted to plants and
cyanobacteria to separate it from the homologues which
act in the biosynthesis of bacteriochlorophyll.
Length = 398
Score = 30.3 bits (68), Expect = 1.00
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIP 48
VAVVGGGPAG + A A + ++E++ C G IP
Sbjct: 3 VAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCG--GAIP 44
>gnl|CDD|180227 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 30.2 bits (69), Expect = 1.0
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 3 YDVAVVGGGPAG--YACAIKA-AQLKNKVAIIE 32
DV +VGGG AG A A+ + VA+IE
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIE 36
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 30.2 bits (68), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 4 DVAVVGGGPAG--YACAIKAAQLKNKVAIIEKEKTYGG 39
D +VGGG AG A ++ A+ ++ +IE +T GG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38
>gnl|CDD|178300 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 30.2 bits (68), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAII 31
D+ V+G GPAG A A ++A+L V +I
Sbjct: 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLI 137
>gnl|CDD|180449 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 538
Score = 30.3 bits (69), Expect = 1.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36
DV +VG GP G A Q +V ++E+ T
Sbjct: 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44
>gnl|CDD|180451 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 30.2 bits (69), Expect = 1.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 4 DVAVVGGGPAG 14
D +VGGGPAG
Sbjct: 8 DCCIVGGGPAG 18
Score = 27.9 bits (63), Expect = 5.9
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 231 NFQL--NSKVSSVKKVKGK-AQVVYRSTDDEPINIEADAVLVAAGRRPYTK-----GLGL 282
NF L ++V+ + + G+ V R T D P I AD V+ A GR +++ GL +
Sbjct: 123 NFTLRMGAEVTGLIEEGGRVTGVRAR-TPDGPGEIRADLVVGADGR--HSRVRALAGLEV 179
Query: 283 EEIGINID 290
E G +D
Sbjct: 180 REFGAPMD 187
>gnl|CDD|177829 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 29.8 bits (67), Expect = 1.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VAV+G G AG A + + + V + E+EK GG
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47
>gnl|CDD|177713 PLN00093, PLN00093, geranylgeranyl diphosphate reductase;
Provisional.
Length = 450
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 3 YDVAVVGGGPAGYACAIKA 21
VAV+GGGPAG ACA +
Sbjct: 40 LRVAVIGGGPAG-ACAAET 57
>gnl|CDD|180450 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 29.6 bits (67), Expect = 1.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
DV +VG GP G AI+ A+ +IEK
Sbjct: 5 DVLIVGAGPTGLTLAIELARRGVSFRLIEK 34
Score = 28.8 bits (65), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 178 LVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG 212
L++GAG GL L R G ++IE + G
Sbjct: 7 LIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPG 41
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 29.9 bits (67), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
+ YD V+GGG AG A + A KVA+I K
Sbjct: 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISK 36
>gnl|CDD|185473 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 29.7 bits (67), Expect = 1.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
YD VVG G AG A+ +L K A I K
Sbjct: 30 YDAVVVGAGGAGLRAALGLVELGYKTACISK 60
>gnl|CDD|184008 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 502
Score = 29.6 bits (67), Expect = 1.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
YD+ V+GGG G A AA KV + EK+ GT
Sbjct: 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44
>gnl|CDD|178411 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 29.3 bits (66), Expect = 2.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
+D V+G G AG A++ A+ VAII K++ +
Sbjct: 30 FDFLVIGSGIAGLRYALEVAEY-GTVAIITKDEPHES 65
>gnl|CDD|171760 PRK12837, PRK12837, 3-ketosteroid-delta-1-dehydrogenase;
Provisional.
Length = 513
Score = 29.4 bits (66), Expect = 2.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40
DV V G G G A A AA+ VA++E +GGT
Sbjct: 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGT 44
>gnl|CDD|180957 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 29.2 bits (66), Expect = 2.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 3 YDVAVVGGGPAG-YACAIKAAQLKNKVAIIEKEK 35
+DV VVG G AG YA + L +V +I K+
Sbjct: 10 FDVLVVGSGAAGLYAALCLPSHL--RVGLITKDT 41
>gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 29.0 bits (65), Expect = 2.5
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKN---KVAIIE 32
DVA++GGG G A AA LK ++A+IE
Sbjct: 6 DVAIIGGGMVGLAL---AAALKESDLRIAVIE 34
>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase.
This clade of sequences are members of the pfam01266
family of FAD-dependent oxidoreductases. Characterized
proteins within this family include
glycerol-3-phosphate dehydrogenase (1.1.99.5),
sarcosine oxidase beta subunit (1.5.3.1) and a number
of deaminating amino acid oxidases (1.4.-.-). These
genes have been consistently observed in a genomic
context including genes for the import and catabolism
of 2-aminoethylphosphonate (AEP). If the substrate of
this oxidoreductase is AEP itself, then it is probably
acting in the manner of a deaminating oxidase,
resulting in the same product (phosphonoacetaldehyde)
as the transaminase PhnW (TIGR02326), but releasing
ammonia instead of coupling to pyruvate:alanine.
Alternatively, it is reasonable to suppose that the
various ABC cassette transporters which are also
associated with these loci allow the import of
phosphonates closely related to AEP which may not be
substrates for PhnW.
Length = 460
Score = 28.6 bits (64), Expect = 3.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 4 DVAVVGGGPAGY--ACAIKAAQLKNKVAIIEKEKTYGGTC-LNIGCI 47
DV +VGGG G A IK + V ++E + G N GC+
Sbjct: 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCM 72
>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.
Length = 341
Score = 28.6 bits (65), Expect = 3.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 167 ALSFSSVPKNLLVIGAGVIGL 187
ALSF V +++L+ GAG IG+
Sbjct: 157 ALSFDLVGEDVLITGAGPIGI 177
>gnl|CDD|180495 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 28.8 bits (65), Expect = 3.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41
M+ DV ++G G AG AI+A + KN V I+ K C
Sbjct: 6 MITDVLIIGSGGAGARAAIEAERGKN-VVIVSKGLFGKSGC 45
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 28.7 bits (65), Expect = 3.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 357 VASIGKTEEQLKCEKKSYKVGKFPFS 382
VA + KT + YKVGKFPF+
Sbjct: 301 VARLRKTASVPRLPAPKYKVGKFPFT 326
>gnl|CDD|179368 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 28.3 bits (64), Expect = 4.6
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQL----KNKVAIIEKEKTYGGT 40
M YD ++G G AG C + A +L V ++E GG
Sbjct: 4 MEYDYIIIGAGSAG--CVL-ANRLSEDPDVSVLLLE----AGGP 40
>gnl|CDD|185578 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 28.3 bits (63), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
YDV +VGG AG A ++ KV ++E+
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64
>gnl|CDD|183060 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 27.9 bits (63), Expect = 5.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
M YDV V+G G G A A+ +V +++
Sbjct: 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDR 34
>gnl|CDD|179330 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 27.9 bits (63), Expect = 5.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34
D A++GGG AG A A+ A+ +V + E +
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYEAD 292
>gnl|CDD|181360 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 28.0 bits (63), Expect = 5.5
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 4 DVAVVGGGPAGYACAIKAAQL 24
DV +VG GPAG AAQL
Sbjct: 34 DVLIVGCGPAG---LTLAAQL 51
>gnl|CDD|131779 TIGR02732, zeta_caro_desat, carotene 7,8-desaturase. Carotene
7,8-desaturase, also called zeta-carotene desaturase,
catalyzes multiple steps in the pathway from
geranylgeranyl-PP to all-trans-lycopene in plants and
cyanobacteria. A similar enzyme and pathway is found in
the green sulfur bacterium Chlorobium tepidum.
Length = 474
Score = 27.9 bits (62), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39
VA+VG G AG + A++ ++V I E GG
Sbjct: 2 VAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36
>gnl|CDD|180733 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 28.0 bits (63), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 4 DVAVVGGGPAGYACAIKAAQLKN--KVAIIEK 33
D+ ++GGG AG A +A + KV I+EK
Sbjct: 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK 44
>gnl|CDD|180870 PRK07190, PRK07190, hypothetical protein; Provisional.
Length = 487
Score = 27.9 bits (62), Expect = 6.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
V DV ++G GP G CA I++K
Sbjct: 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDK 36
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 27.6 bits (61), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPS 49
VA+ G GPAG A A + V + E GG L G IPS
Sbjct: 433 VAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV-LQYG-IPS 475
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 27.6 bits (62), Expect = 6.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 4 DVAVVGGGPAGYACAIKAAQ 23
D V+G G AG AI AAQ
Sbjct: 7 DALVIGAGLAGLRVAIAAAQ 26
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears
to be present in all complete eubacterial genomes so
far, as well as Saccharomyces cerevisiae. A subset of
these organisms have a closely related protein. GidA is
absent in the Archaea. It appears to act with MnmE, in
an alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34
in certain tRNAs. The shorter, related protein,
previously called gid or gidA(S), is now called TrmFO
(see model TIGR00137).
Length = 617
Score = 27.7 bits (62), Expect = 6.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAII 31
+DV V+GGG AG A+ AA++ K ++
Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKTLLL 29
>gnl|CDD|181326 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 27.6 bits (62), Expect = 6.4
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 5 VAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTY 37
+ +GGGPAG A+ L ++V ++E+ + Y
Sbjct: 3 IVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 27.8 bits (62), Expect = 6.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKN--KVAIIEK 33
+DV +VGGG AG A++ +L VA++ K
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAK 36
>gnl|CDD|181641 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 27.6 bits (62), Expect = 6.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33
YDV VVG G AG + A+ K A I K
Sbjct: 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITK 43
>gnl|CDD|168735 PRK06932, PRK06932, glycerate dehydrogenase; Provisional.
Length = 314
Score = 27.5 bits (61), Expect = 7.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSG 207
L V G G +G E+G + LG V EH G
Sbjct: 150 LGVFGKGCLGTEVGRLAQALGMKVLYAEHKG 180
>gnl|CDD|180488 PRK06249, PRK06249, 2-dehydropantoate 2-reductase; Provisional.
Length = 313
Score = 27.2 bits (61), Expect = 8.8
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 24/94 (25%)
Query: 179 VIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKE-IAAHCLKIMSKQGMNFQLNSK 237
+IG G IG G++ R G V + S D E + + L++ S G +F L
Sbjct: 10 IIGTGAIGGFYGAMLARAGFDVHFLLRS-------DYEAVRENGLQVDSVHG-DFHL--- 58
Query: 238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAA 271
V+ YRS +D P D VLV
Sbjct: 59 ----PPVQA-----YRSAEDMP---PCDWVLVGL 80
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.133 0.376
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,330,046
Number of extensions: 476889
Number of successful extensions: 1554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1333
Number of HSP's successfully gapped: 213
Length of query: 466
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 369
Effective length of database: 3,898,497
Effective search space: 1438545393
Effective search space used: 1438545393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)