BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase
[Candidatus Liberibacter asiaticus str. psy62]
(466 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 466
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/466 (100%), Positives = 466/466 (100%)
Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS
Sbjct: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60
Query: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN
Sbjct: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
Query: 121 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI
Sbjct: 121 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180
Query: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240
GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS
Sbjct: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240
Query: 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300
VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ
Sbjct: 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300
Query: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI 360
FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI
Sbjct: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI 360
Query: 361 GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE 420
GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE
Sbjct: 361 GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE 420
Query: 421 MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466
MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM
Sbjct: 421 MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466
>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 481
Score = 279 bits (714), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 174/482 (36%), Positives = 270/482 (56%), Gaps = 23/482 (4%)
Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSH 61
+YD+ ++G GPAGY AI+AAQL KVAI+E GG CLN GCIP+K+LL ++E+ H
Sbjct: 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDH 62
Query: 62 IAKEAGDLGINIA-SCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120
I + A G+N+A +++ ++ + I +G+ FL+ KNK+ G A + + +
Sbjct: 63 I-QNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPS 121
Query: 121 KILVKGSSS---------------EETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSST 165
+I V S E T +AK+I+IATG+ + G I+ D +I +
Sbjct: 122 EITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEG--IEPDSHLIWTYF 179
Query: 166 GALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIM 225
AL S PK+L+V+G+G IG+E S + L V +IE IL D EI+ + +
Sbjct: 180 DALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239
Query: 226 SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEI 285
K+G+ SK+SSVK+ V D +++A+ +L++AG + + +GLE+I
Sbjct: 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299
Query: 286 GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKG--HVN 343
G+ + GCI + G +T++ IYAIGDV PMLAHKAE EGI E I+G+ ++
Sbjct: 300 GVKTSN-GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358
Query: 344 YGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANE 403
IP Y +P+VASIG TEE+ + + +VGK FSANG+A ++ G +K + N
Sbjct: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418
Query: 404 KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQP 463
K+ V GVH++G E+I ++ M + E+L HPT+SE ++E+ L + +
Sbjct: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRA 478
Query: 464 IH 465
IH
Sbjct: 479 IH 480
>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 183 bits (465), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 137/467 (29%), Positives = 230/467 (49%), Gaps = 45/467 (9%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62
YD+ V+G G +G A AAQL KVAI E+ + GGTC+ GCIP K + +AS+ YS
Sbjct: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQ-YSEY 62
Query: 63 AKEAGDLGINIASCHLDLKKMMSYKK---SIVES------NTQGINFLLKKNKIITYHGS 113
+++ G ++ D + +++ + S +ES + G+ K + + H S
Sbjct: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH-S 121
Query: 114 ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD-EQVIVSSTGALSFSS 172
I + N+ TI ++ IV++TG G P +DF + ++S S S
Sbjct: 122 VYIANLNR----------TITSRYIVVSTG----GSPN-RMDFKGSDLCITSDEIFSLKS 166
Query: 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232
+P++ L+IG G I +E + LGS ++ +IL+ D +I +M +GM
Sbjct: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226
Query: 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR 292
N + SV G+ + + +S ++ D V++A GR P T G+GLE++G+ +D
Sbjct: 227 FHNDTIESVVSESGQLKSILKSGK----IVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282
Query: 293 GCIEIGGQFQTSISTIYAIGDVV----RGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIP 348
G I +T++ +I+++GD+ P+ H A V + +Y ++P
Sbjct: 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA---ACFVETVFKDNPTIPDYDLVP 339
Query: 349 SVVYTHPEVASIGKTEE---QLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKS 405
+ V++ PE+AS+G TEE Q C + YK FP R ++I +KI+ + +
Sbjct: 340 TAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTI---MKIIVHADN 396
Query: 406 DRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAV 452
+V GVHI+G A E+I V ++ G +D R HPT SE +
Sbjct: 397 HKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 321
Score = 28.9 bits (63), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAII 31
+ ++G GPAGY AI AA+ K II
Sbjct: 8 ILIIGSGPAGYTAAIYAARAMLKPVII 34
>gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 27.3 bits (59), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 376 VGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGG 416
+ K F A+ ++ + D FVKI N S+ + + ++GG
Sbjct: 5 IQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGG 45
>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 520
Score = 26.6 bits (57), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 208 TILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEAD 265
T ++GM + H MNF + V +VKG +VVY T P IE +
Sbjct: 471 TSIDGMTADFYHH--------DMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520
>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 542
Score = 26.6 bits (57), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 45 GCIPSKALLHASEMYSH-IAKEAGDLGINIASCHLDLKKMMSYKKSIV 91
GC P L+HA ++Y + ++ D G A+C D + M K I
Sbjct: 246 GCHPDPNLIHAKDLYDRMMMHDSADFG---AACDGDGDRSMILGKGIF 290
>gi|254780563|ref|YP_003064976.1| extracellular solute-binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 195
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 152 MSIDFDEQVIVSSTGALSFSSVPKNLL 178
M I FD QV+ ST + + +PK++
Sbjct: 115 MRISFDTQVLAYSTKRIKIADLPKSVF 141
>gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 609
Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 7 VVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG 45
++ P Y C +++N + + E E G CL +G
Sbjct: 513 ILSNEPGYYRCGAFGIRIENVLCVSEPETINNGECLMLG 551
>gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 337
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 340 GHVNYGIIPSVV-----YTHPEVASIGKTEEQLKCEKKSY 374
GH+N GI+P V + P +I T + LK +KK+Y
Sbjct: 194 GHINVGIMPYVAKFNSSFYGPYRDAIS-TRDLLKGDKKTY 232
>gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 263
Score = 24.6 bits (52), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLEL 189
+ID DE+V+V ST L + + LV V L L
Sbjct: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218
>537021.9.peg.477_1
Length = 235
Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 146 ASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLG 197
+SGL GM I F + + + A + S KNL +I +G + + L S+ LG
Sbjct: 168 SSGLMGMFIVFFKPCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLG 219
>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAII-EKEKTYGGTCLN 43
YDV V+GGG AG A AA+L A+I K T G N
Sbjct: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 23.9 bits (50), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 3 YDVAVVGGGPAGYACAIKAAQ 23
+DV ++G G AG AI AA+
Sbjct: 4 FDVIIIGSGLAGSVAAIGAAK 24
>gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 111
Score = 23.5 bits (49), Expect = 8.3, Method: Composition-based stats.
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 217 IAAHCLKIMSKQGMNFQL 234
I HCL ++S G+N+ +
Sbjct: 2 IILHCLSVISSMGINYNI 19
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,193
Number of Sequences: 1233
Number of extensions: 12338
Number of successful extensions: 66
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 20
length of query: 466
length of database: 328,796
effective HSP length: 77
effective length of query: 389
effective length of database: 233,855
effective search space: 90969595
effective search space used: 90969595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)