HHsearch alignment for GI: 254781054 and conserved domain: PRK10434
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional.
Probab=98.95 E-value=1.2e-08 Score=74.59 Aligned_cols=117 Identities=22% Similarity=0.173 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH--CCCCCCC----------
Q ss_conf 8999999999998389978998879178999999999987328704896188999999873--1578655----------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI--HHIPLHS---------- 71 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~--~gi~~~~---------- 71 (231)
T Consensus 75 ~~~K~~IA~~Aa~lI~~g~~I~lD~GTT~~~la~~L~~----~~~ltVvTNsl~ia~~l~~~~~~~~v~l~GG~~~~~~~ 150 (256)
T PRK10434 75 THKKELIAEAAVSLIHDGDSIILDAGSTVLQMVPLLSR----FNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSA 150 (256)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCC----CCCCEEEECCHHHHHHHHHCCCCCEEEECCCEEECCCC
T ss_conf 99999999999986899999998497689999998433----69978998989999999846998679926967846877
Q ss_pred ----------CCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf ----------1008800798633000476605883165777778799861022699962303513
Q gi|254781054|r 72 ----------PEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 72 ----------l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
T Consensus 151 s~~G~~a~~~l~~-~~~d~aFig~~gi~~~~g~t~~~e~~~vk-~~m~~~s~~~illaDssKf~~ 213 (256)
T PRK10434 151 SFHGQLAENAFEH-FTFDKLFMGTDGIDLNAGVTTFNEVYTVS-KAMCNAAREVILMADSSKFGR 213 (256)
T ss_pred CCCCHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCHHHHHHH-HHHHHHCCCEEEEECHHHCCC
T ss_conf 3205999999875-27878998446065788846731999999-999985698899986213287