HHsearch alignment for GI: 254781054 and conserved domain: PRK10434

>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional.
Probab=98.95  E-value=1.2e-08  Score=74.59  Aligned_cols=117  Identities=22%  Similarity=0.173  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH--CCCCCCC----------
Q ss_conf             8999999999998389978998879178999999999987328704896188999999873--1578655----------
Q gi|254781054|r    4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI--HHIPLHS----------   71 (231)
Q Consensus         4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~--~gi~~~~----------   71 (231)
T Consensus        75 ~~~K~~IA~~Aa~lI~~g~~I~lD~GTT~~~la~~L~~----~~~ltVvTNsl~ia~~l~~~~~~~~v~l~GG~~~~~~~  150 (256)
T PRK10434         75 THKKELIAEAAVSLIHDGDSIILDAGSTVLQMVPLLSR----FNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSA  150 (256)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCC----CCCCEEEECCHHHHHHHHHCCCCCEEEECCCEEECCCC
T ss_conf             99999999999986899999998497689999998433----69978998989999999846998679926967846877


Q ss_pred             ----------CCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf             ----------1008800798633000476605883165777778799861022699962303513
Q gi|254781054|r   72 ----------PEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD  126 (231)
Q Consensus        72 ----------l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~  126 (231)
T Consensus       151 s~~G~~a~~~l~~-~~~d~aFig~~gi~~~~g~t~~~e~~~vk-~~m~~~s~~~illaDssKf~~  213 (256)
T PRK10434        151 SFHGQLAENAFEH-FTFDKLFMGTDGIDLNAGVTTFNEVYTVS-KAMCNAAREVILMADSSKFGR  213 (256)
T ss_pred             CCCCHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCHHHHHHH-HHHHHHCCCEEEEECHHHCCC
T ss_conf             3205999999875-27878998446065788846731999999-999985698899986213287