HHsearch alignment for GI: 254781054 and conserved domain: PRK10681
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional.
Probab=98.87 E-value=2.4e-08 Score=72.71 Aligned_cols=115 Identities=17% Similarity=0.071 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCCCC------------
Q ss_conf 9999999999983899789988791789999999999873287048961889999998731-578655------------
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH-HIPLHS------------ 71 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~-gi~~~~------------ 71 (231)
T Consensus 77 ~eK~~IA~~Aa~lI~~g~~IflD~GTT~~~la~~L~----~~~~ltviTnsl~~~~~l~~~~~~~vil~GG~~~~~~~~~ 152 (252)
T PRK10681 77 EEKRRAAQLAATLVEPDQTVFFDCGTTTPWIIEAID----NELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIF 152 (252)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCEE
T ss_conf 999999999996489999999908689999999831----1388599964399999996389987998087785288468
Q ss_pred --------CCCCCEEEEEECCHHCCCCCCEE-EECCCHHHHHHHHHHHHHCCEEEEEEHHHCC
Q ss_conf --------10088007986330004766058-8316577777879986102269996230351
Q gi|254781054|r 72 --------PEDVSSVDLSIDGFDEIDSRLRL-IKGYGGALLREKIIAHAASRFIVIGDESKRV 125 (231)
Q Consensus 72 --------l~~~~~iDi~iDGaDevd~~l~l-IKGgGgAl~rEKiva~~a~~~I~i~D~sK~v 125 (231)
T Consensus 153 ~g~~~~~~l~~-~~~d~aFig~~gi~~~~G~t~~~~~ea~~k~~~i-~~a~~~illaD~sKf~ 213 (252)
T PRK10681 153 KPLDFQSTLNN-ICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAM-AMAQKHVLVVDHSKFG 213 (252)
T ss_pred ECHHHHHHHHH-HCCCEEEEECCEECCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECHHHCC
T ss_conf 66899999985-1488899807548378996559999999999999-9579699998732428