HHsearch alignment for GI: 254781054 and conserved domain: PRK13509
>PRK13509 transcriptional repressor UlaR; Provisional.
Probab=98.87 E-value=1.8e-08 Score=73.38 Aligned_cols=117 Identities=17% Similarity=0.077 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCCCCC----------
Q ss_conf 89999999999983899789988791789999999999873287048961889999998731-5786551----------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH-HIPLHSP---------- 72 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~-gi~~~~l---------- 72 (231)
T Consensus 77 ~~~K~~IA~~Aa~lI~~g~~IflD~GtT~~~la~~L~~-----~~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~~~~~ 151 (251)
T PRK13509 77 HDEKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCG-----KPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSI 151 (251)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCC-----CCCEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCE
T ss_conf 99999999999964899999998486899999998628-----9949996889999999838998699819878168767
Q ss_pred --------CCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf --------008800798633000476605883165777778799861022699962303513
Q gi|254781054|r 73 --------EDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 73 --------~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
T Consensus 152 ~~~~~~~~~~~~~~d~~f~~~~gi~~~G~~~~~~~~a~~k-~~~~~~a~~~ill~DssK~~~ 212 (251)
T PRK13509 152 TLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAE-QKMLSVVGKLVVLVDSSKIGE 212 (251)
T ss_pred EHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH-HHHHHHCCCEEEEECCCCCCC
T ss_conf 6128999998404679998156447998756889999999-999995697899987220287