HHsearch alignment for GI: 254781054 and conserved domain: TIGR00511
>TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250 The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota..
Probab=93.07 E-value=0.67 Score=26.39 Aligned_cols=121 Identities=23% Similarity=0.242 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECH-------HHHHHHHHHCCCCCCCCCC----
Q ss_conf 99999999998389978998879178999999999987328704896188-------9999998731578655100----
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSS-------RNTENFCKIHHIPLHSPED---- 74 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS-------~~t~~~a~~~gi~~~~l~~---- 74 (231)
T Consensus 102 A~~~IG~~G~~RIKDG~T~lTHCNS~AA~S--VIK~A~~~GK~~~V~~TE~RPR~QG~LT~K~L~~~GI~VTLIVDSAVR 179 (303)
T TIGR00511 102 AIRKIGKIGEKRIKDGDTVLTHCNSEAALS--VIKKAYDEGKDVKVIATESRPRNQGYLTVKTLRDAGIDVTLIVDSAVR 179 (303)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCHHHHHH--HHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECHHE
T ss_conf 998864421121247871553005067999--998775368748999706898634025466786659448998501010
Q ss_pred --CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCC-EEEEEEHHHCCC-CC-CC
Q ss_conf --8800798633000476605883165777778799861022-699962303513-45-57
Q gi|254781054|r 75 --VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASR-FIVIGDESKRVD-FL-GR 130 (231)
Q Consensus 75 --~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~-~I~i~D~sK~v~-~L-g~ 130 (231)
T Consensus 180 YFI~E~D~VVVGAD~ITANG~L~NKIGTSQIA--L~A~E~RVPFl~AAETYKF~PKT~~GE 238 (303)
T TIGR00511 180 YFIKEVDIVVVGADAITANGALVNKIGTSQIA--LIAKEARVPFLVAAETYKFSPKTLVGE 238 (303)
T ss_pred EEEEEEEEEEECCCCHHHCCCEEECCCHHHHH--HHHHCCCCCHHHHHHHCCCCCCEEEEE
T ss_conf 01125658998785011254100000056899--976116874101101014688505643