HHsearch alignment of GI: 254781054 and MMDB domain: 3cdk_B_
>3cdk_B (B:) Succinyl-COA:3-ketoacid-coenzyme A transferase subunit B; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=98.30 E-value=1.5e-07 Score=67.33 Aligned_cols=113 Identities=23% Similarity=0.283 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH----HHHHCCCCCCC--------
Q ss_conf 899999999999838997899887917899999999998732870489618899999----98731578655--------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN----FCKIHHIPLHS-------- 71 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~----~a~~~gi~~~~-------- 71 (231)
.+.|++.|++|+++|++|++|-+|+|||...+.+.+. ..+.+.+..|..... +....++.+..
T Consensus 5 ~~~K~~IA~~aa~~I~dg~~i~lg~Gtt~~~~a~~~~-----~~~~~~vt~s~~i~~~~~~l~~~~~~~~~~~g~~~~~~ 79 (219)
T 3cdk_B 5 KEARKRMVKRAVQEIKDGMNVNLGIGMPTLVANEIPD-----GVHVMLQSENGLLGIGPYPLEGTEDADLINAGKETITE 79 (219)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEECSSGGGGGGTTCCT-----TCCCEEEETTTEEEEECCCBTTTCCTTCBCTTSBBCEE
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCC-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 6899999999997678999999785889999986503-----77545886365136533220277566601375113211
Q ss_pred --------------CCCCCEEEEEECCHHCCCCCCEEE---------ECCCHHHHHHHHHHHHHCCEEEEEEHHHCC
Q ss_conf --------------100880079863300047660588---------316577777879986102269996230351
Q gi|254781054|r 72 --------------PEDVSSVDLSIDGFDEIDSRLRLI---------KGYGGALLREKIIAHAASRFIVIGDESKRV 125 (231)
Q Consensus 72 --------------l~~~~~iDi~iDGaDevd~~l~lI---------KGgGgAl~rEKiva~~a~~~I~i~D~sK~v 125 (231)
.-..-.+|++|=||+++|..+++- +|.++. +.+..+|++.|+++|++|+-
T Consensus 80 ~~~~~~~~g~~~~~~l~~~~~d~aflg~~~id~~gg~~~~~~~~~~~~~~~~~----~~~~~~a~~~ill~d~~k~~ 152 (219)
T 3cdk_B 80 VTGASYFDSAESFAMIRGGHIDLAILGGMEVSEQGDLANWMIPGKMVKGMGGA----MDLVNGAKRIVVIMEHVNKH 152 (219)
T ss_dssp EEEEEECCHHHHHHHHHTTCCCEEEECCSEEETTCCEECSCCTTC-CCBCTTH----HHHHHHSSEEEEECCSBCTT
T ss_pred CCCCEEECCCCCCEEECCCCCCEEEEEHHHHCCCCEEEHHHCCCCCCCCCCCC----CCEECCCCEEEEEECCCCCC
T ss_conf 35012651445503560578524885134408642211200586122587456----52203676289970326058