HHsearch results for GI: 254781054 and protein with PDBid: 3d3u_A
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Porphyromonas gingivalis W83}
Probab=95.19 E-value=0.053 Score=31.90 Aligned_cols=124 Identities=12% Similarity=0.128 Sum_probs=75.6
Q ss_pred CCHH---HHHHHHHHHH-HHHCCCCCEEEECCC-HHHHHHHHHHHHHHHCCCEEEEEE----------------------
Q ss_conf 9878---9999999999-983899789988791-789999999999873287048961----------------------
Q gi|254781054|r 1 MDAL---QMKRNAARRA-IQYVVDGMTLGMGTG-STAKEFMILLADKIANGFRVQVIP---------------------- 53 (231)
Q Consensus 1 M~~~---~~K~~~a~~A-~~~v~~gmviGlGtG-STv~~~i~~L~~~~~~~~~i~~v~---------------------- 53 (231)
||-. +.|..-|++| +++|+|||+|.+|.+ .+-..++++|.++..+-.+++.+.
T Consensus 1 m~~~~~y~~K~~sa~EAia~~IkdGdtI~~~g~~g~P~~L~~aL~~r~~~~~~ltl~~~~~~g~~~~~~~~~~~~i~~~~ 80 (439)
T 3d3u_A 1 MQWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTL 80 (439)
T ss_dssp -CCHHHHHHHBCCHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC
T ss_pred CCHHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCEEEEEC
T ss_conf 98578887658909999873798879999879858999999999985457899699994488764331056448289965
Q ss_pred --CHHHHHHHHHHCCC-----CCCCC-----CCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEH
Q ss_conf --88999999873157-----86551-----0088007986330004766058831657777787998610226999623
Q gi|254781054|r 54 --SSRNTENFCKIHHI-----PLHSP-----EDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121 (231)
Q Consensus 54 --tS~~t~~~a~~~gi-----~~~~l-----~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~ 121 (231)
.|...+.+..+-.+ ++... ...-.+|++|=.+-..|.++|+.=|...... .-++.+|+..|..+++
T Consensus 81 ~~~~~~~r~~~~~g~~~~~p~~~~~~~~~l~~~~~~iDVA~i~~s~~De~Gn~s~g~s~~~~--~a~~~~a~~VI~eVn~ 158 (439)
T 3d3u_A 81 NFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYT--KAAAECAPVVVAEVNK 158 (439)
T ss_dssp --------------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTTBCBTH--HHHHHHCSEEEEEEES
T ss_pred CCCCHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCHHHH--HHHHHHCCEEEEECCC
T ss_conf 77898999999779952126764479999981899974899995214678853046843668--9998628869984156
Q ss_pred HHCCCCC
Q ss_conf 0351345
Q gi|254781054|r 122 SKRVDFL 128 (231)
Q Consensus 122 sK~v~~L 128 (231)
.++..
T Consensus 159 --~~P~~ 163 (439)
T 3d3u_A 159 --QMPFI 163 (439)
T ss_dssp --SSCCC
T ss_pred --CCCCC
T ss_conf --66667