Query gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 231
No_of_seqs 127 out of 1329
Neff 5.5
Searched_HMMs 23785
Date Wed Jun 1 01:29:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781054.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lk5_A D-ribose-5-phosphate is 100.0 0 0 558.7 25.2 226 1-231 1-229 (229)
2 2f8m_A Ribose 5-phosphate isom 100.0 0 0 544.6 23.3 229 1-231 7-241 (244)
3 1xtz_A Ribose-5-phosphate isom 100.0 0 0 536.2 23.4 225 3-231 18-258 (264)
4 2pjm_A Ribose-5-phosphate isom 100.0 0 0 527.2 23.3 223 1-231 1-226 (226)
5 1m0s_A Ribose-5-phosphate isom 100.0 0 0 526.9 23.6 217 1-230 1-219 (219)
6 1uj6_A Ribose 5-phosphate isom 100.0 0 0 524.6 24.9 220 3-229 5-226 (227)
7 3kwm_A Ribose-5-phosphate isom 100.0 0 0 526.6 22.0 216 2-229 8-224 (224)
8 1o8b_A Ribose 5-phosphate isom 100.0 0 0 527.7 15.0 218 1-231 1-219 (219)
9 3hhe_A Ribose-5-phosphate isom 100.0 0 0 509.0 26.0 230 1-230 22-251 (255)
10 3ecs_A Translation initiation 97.3 0.0031 1.3E-07 39.5 10.8 130 5-138 106-251 (315)
11 1vb5_A Translation initiation 97.3 0.0069 2.9E-07 37.4 12.4 121 4-129 93-228 (276)
12 3a11_A Translation initiation 97.2 0.012 4.9E-07 36.0 12.7 130 5-137 126-269 (338)
13 1t5o_A EIF2BD, translation ini 96.7 0.03 1.3E-06 33.4 11.3 130 5-139 131-285 (351)
14 1t9k_A Probable methylthioribo 96.4 0.057 2.4E-06 31.7 10.7 131 5-139 133-289 (347)
15 1poi_B Glutaconate coenzyme A- 96.3 0.0023 9.8E-08 40.3 3.5 117 6-129 7-161 (260)
16 3efb_A Probable SOR-operon reg 95.9 0.0085 3.6E-07 36.8 4.6 171 3-207 39-232 (266)
17 1k6d_A Acetate COA-transferase 95.8 0.0073 3.1E-07 37.3 4.1 45 7-53 4-51 (220)
18 2ahu_A Putative enzyme YDIF; C 95.8 0.026 1.1E-06 33.9 6.7 38 7-44 14-55 (531)
19 2gnp_A Transcriptional regulat 95.7 0.015 6.2E-07 35.3 5.1 67 4-72 37-120 (266)
20 3nze_A Putative transcriptiona 95.5 0.016 6.9E-07 35.1 4.8 41 2-42 34-78 (267)
21 3kv1_A Transcriptional repress 95.3 0.017 7E-07 35.0 4.4 67 3-71 34-117 (267)
22 3d3u_A 4-hydroxybutyrate COA-t 95.2 0.053 2.2E-06 31.9 6.6 124 1-128 1-163 (439)
23 2r5f_A Transcriptional regulat 95.1 0.024 9.9E-07 34.1 4.5 81 3-87 36-133 (264)
24 2oas_A ATOA, 4-hydroxybutyrate 94.9 0.1 4.4E-06 30.1 7.4 109 11-121 9-152 (436)
25 2yvk_A Methylthioribose-1-phos 94.8 0.18 7.7E-06 28.5 8.4 131 5-139 158-314 (374)
26 3gk7_A 4-hydroxybutyrate COA-t 94.8 0.057 2.4E-06 31.7 5.8 118 6-127 9-161 (448)
27 2okg_A Central glycolytic gene 94.6 0.03 1.2E-06 33.5 4.1 67 5-72 37-119 (255)
28 2w48_A Sorbitol operon regulat 94.1 0.03 1.2E-06 33.5 3.1 66 5-71 90-173 (315)
29 2o0m_A Transcriptional regulat 93.8 0.03 1.3E-06 33.4 2.6 68 4-71 121-205 (345)
30 2nvv_A Acetyl-COA hydrolase/tr 91.9 0.12 5E-06 29.7 3.6 115 6-122 3-162 (506)
31 3k6m_A Succinyl-COA:3-ketoacid 89.7 0.26 1.1E-05 27.6 3.6 34 10-43 6-42 (481)
32 1poi_A Glutaconate coenzyme A- 89.4 0.11 4.5E-06 30.0 1.4 43 77-121 171-213 (317)
33 3cdk_B Succinyl-COA:3-ketoacid 87.8 0.036 1.5E-06 32.9 -1.8 112 4-124 5-151 (219)
34 1xr4_A Putative citrate lyase 86.7 1.7 7.3E-05 22.5 6.9 110 6-119 249-410 (509)
35 2hj0_A Putative citrate lyase, 86.7 1.7 7.3E-05 22.5 8.6 190 5-227 251-505 (519)
36 3eh7_A 4-hydroxybutyrate COA-t 84.0 0.29 1.2E-05 27.3 1.2 118 6-127 13-165 (434)
37 2g39_A Acetyl-COA hydrolase; c 83.0 0.43 1.8E-05 26.2 1.8 115 6-122 13-167 (497)
38 1zcz_A Bifunctional purine bio 75.6 2.3 9.7E-05 21.7 3.6 90 32-129 26-137 (464)
39 3cdk_A Succinyl-COA:3-ketoacid 75.0 2.9 0.00012 21.1 3.9 42 10-53 10-54 (241)
40 2ri0_A Glucosamine-6-phosphate 75.0 2.7 0.00011 21.3 3.8 42 2-43 9-51 (234)
41 2a0u_A Initiation factor 2B; S 74.7 4.6 0.00019 19.8 9.2 106 27-138 194-317 (383)
42 2cyy_A Putative HTH-type trans 71.6 5.3 0.00022 19.4 4.7 86 113-211 52-137 (151)
43 1w2w_B 5-methylthioribose-1-ph 69.4 6.1 0.00025 19.1 6.5 80 58-138 22-112 (191)
44 2cvi_A 75AA long hypothetical 65.6 7.2 0.0003 18.6 5.0 64 133-208 6-70 (83)
45 3jv7_A ADH-A; dehydrogenase, n 64.3 7.6 0.00032 18.5 5.3 51 17-69 168-219 (345)
46 3id6_C Fibrillarin-like rRNA/T 63.1 8 0.00034 18.3 4.4 42 17-62 73-117 (232)
47 1sg6_A Pentafunctional AROM po 62.4 8.3 0.00035 18.3 5.0 43 19-62 105-147 (393)
48 2ipx_A RRNA 2'-O-methyltransfe 61.5 8.6 0.00036 18.2 4.3 42 17-62 74-118 (233)
49 3krt_A Crotonyl COA reductase; 60.4 7.7 0.00032 18.5 3.7 50 18-69 226-276 (456)
50 2jsx_A Protein NAPD; TAT, proo 58.1 9.9 0.00041 17.8 5.4 71 132-214 9-79 (95)
51 1im8_A YECO; methyltransferase 57.8 10 0.00042 17.8 5.3 55 6-64 44-102 (244)
52 1ehi_A LMDDL2, D-alanine:D-lac 57.5 7.6 0.00032 18.5 3.2 51 144-214 282-333 (377)
53 2zbc_A 83AA long hypothetical 56.3 11 0.00044 17.6 5.3 66 133-210 6-72 (83)
54 2d8a_A PH0655, probable L-thre 55.3 11 0.00046 17.5 4.7 67 16-85 163-244 (348)
55 2bkx_A Glucosamine-6-phosphate 53.8 12 0.00049 17.3 5.0 43 2-44 8-52 (242)
56 3lwb_A D-alanine--D-alanine li 53.6 3.3 0.00014 20.7 0.9 37 144-185 297-333 (373)
57 3hn6_A Glucosamine-6-phosphate 52.4 12 0.00051 17.2 4.5 44 2-45 29-79 (289)
58 1xtt_A Probable uracil phospho 50.8 13 0.00054 17.1 3.5 26 188-216 170-195 (216)
59 3jyn_A Quinone oxidoreductase; 50.7 13 0.00055 17.0 5.5 50 17-68 137-187 (325)
60 1jr2_A Uroporphyrinogen-III sy 49.7 13 0.00057 16.9 7.2 58 14-71 70-137 (286)
61 1xah_A Sadhqs, 3-dehydroquinat 47.7 14 0.00061 16.8 3.5 40 19-59 90-129 (354)
62 2ko1_A CTR148A, GTP pyrophosph 47.4 15 0.00061 16.7 5.7 70 130-207 3-75 (88)
63 1g8m_A Aicar transformylase-IM 47.3 12 0.00049 17.4 2.8 31 94-126 124-154 (593)
64 2aot_A HMT, histamine N-methyl 46.5 15 0.00063 16.6 3.5 41 24-64 59-100 (292)
65 1i5e_A Uracil phosphoribosyltr 46.0 15 0.00065 16.6 4.6 15 189-203 162-176 (209)
66 2nzc_A Hypothetical protein; s 45.3 16 0.00066 16.5 4.4 66 140-209 15-80 (86)
67 3d8t_A Uroporphyrinogen-III sy 43.4 14 0.00061 16.8 2.8 57 14-70 78-138 (286)
68 1fbn_A MJ fibrillarin homologu 41.9 18 0.00075 16.2 4.3 43 17-64 71-116 (230)
69 2djw_A Probable transcriptiona 41.5 18 0.00076 16.2 4.3 66 133-210 6-72 (92)
70 2e1c_A Putative HTH-type trans 41.0 18 0.00077 16.1 4.1 84 114-210 73-156 (171)
71 3gms_A Putative NADPH:quinone 40.6 13 0.00053 17.1 2.2 56 11-68 132-191 (340)
72 2i7c_A Spermidine synthase; tr 38.8 20 0.00083 15.9 4.1 81 19-122 80-160 (283)
73 2qlv_A Carbon catabolite derep 38.1 8.3 0.00035 18.3 0.9 55 127-189 47-131 (171)
74 1wcw_A Uroporphyrinogen III sy 37.6 12 0.00052 17.2 1.7 50 22-71 61-114 (261)
75 3pi7_A NADH oxidoreductase; gr 37.1 21 0.00089 15.7 3.5 47 19-68 164-211 (349)
76 2gru_A 2-deoxy-scyllo-inosose 36.5 22 0.00091 15.7 4.3 44 18-62 93-136 (368)
77 3oj0_A Glutr, glutamyl-tRNA re 36.2 22 0.00092 15.6 3.6 52 20-74 21-73 (144)
78 1y0b_A Xanthine phosphoribosyl 35.8 18 0.00075 16.2 2.3 71 2-74 2-84 (197)
79 2wns_A Orotate phosphoribosylt 35.6 22 0.00094 15.6 3.1 13 19-31 62-74 (205)
80 3eb9_A 6-phosphogluconolactona 35.3 22 0.00095 15.6 5.3 42 2-43 12-59 (266)
81 1g8a_A Fibrillarin-like PRE-rR 34.5 23 0.00098 15.5 3.7 43 17-63 70-115 (227)
82 1ne7_A Glucosamine-6-phosphate 34.3 23 0.00098 15.5 5.7 44 2-45 8-58 (289)
83 2ehj_A Uracil phosphoribosyltr 34.1 23 0.00099 15.4 4.8 14 189-202 161-174 (208)
84 2cfx_A HTH-type transcriptiona 34.1 24 0.00099 15.4 5.9 79 113-207 50-128 (144)
85 1o5o_A Uracil phosphoribosyltr 33.0 25 0.001 15.3 5.5 16 188-203 173-188 (221)
86 1iy9_A Spermidine synthase; ro 32.5 25 0.001 15.3 2.6 43 18-65 76-118 (275)
87 3mw8_A Uroporphyrinogen-III sy 31.8 16 0.00067 16.5 1.5 138 15-155 45-193 (240)
88 3dmp_A Uracil phosphoribosyltr 30.5 27 0.0011 15.1 5.2 13 27-39 140-152 (217)
89 3da8_A Probable 5'-phosphoribo 30.4 22 0.00091 15.7 2.0 53 20-74 11-68 (215)
90 2obb_A Hypothetical protein; s 30.1 27 0.0012 15.0 5.5 51 34-84 28-97 (142)
91 2nxc_A L11 mtase, ribosomal pr 30.0 28 0.0012 15.0 4.0 30 18-47 93-122 (254)
92 3jzd_A Iron-containing alcohol 29.9 28 0.0012 15.0 4.5 36 18-56 88-123 (358)
93 2pvp_A D-alanine-D-alanine lig 29.1 29 0.0012 14.9 2.9 35 145-184 288-322 (367)
94 2pn6_A ST1022, 150AA long hypo 29.1 29 0.0012 14.9 2.7 46 159-209 88-134 (150)
95 1nt2_A Fibrillarin-like PRE-rR 28.5 29 0.0012 14.9 4.1 45 17-66 54-105 (210)
96 3e15_A Glucose-6-phosphate 1-d 27.5 30 0.0013 14.7 3.0 41 2-42 34-82 (312)
97 3okf_A 3-dehydroquinate syntha 27.5 30 0.0013 14.7 4.5 45 18-63 122-166 (390)
98 1h2b_A Alcohol dehydrogenase; 27.5 30 0.0013 14.7 7.7 67 17-85 183-262 (359)
99 1inl_A Spermidine synthase; be 27.0 31 0.0013 14.7 3.5 61 19-85 92-153 (296)
100 1l1q_A Adenine phosphoribosylt 26.8 31 0.0013 14.7 3.1 48 27-74 33-84 (186)
101 2id1_A Hypothetical protein; a 26.0 23 0.00098 15.5 1.6 84 114-198 20-104 (130)
102 2pt6_A Spermidine synthase; tr 25.8 33 0.0014 14.5 5.1 82 18-122 117-198 (321)
103 1v9s_A Uracil phosphoribosyltr 25.5 33 0.0014 14.5 5.5 12 28-39 135-146 (208)
104 3eey_A Putative rRNA methylase 24.9 34 0.0014 14.4 6.3 49 11-63 13-64 (197)
105 3css_A 6-phosphogluconolactona 24.9 34 0.0014 14.4 4.4 42 2-43 13-60 (267)
106 1fs5_A Glucosamine-6-phosphate 24.7 34 0.0014 14.4 5.2 44 2-45 8-58 (266)
107 2o5a_A BH1328 protein; BHR21, 24.7 34 0.0014 14.4 3.1 52 144-195 50-101 (125)
108 1f8f_A Benzyl alcohol dehydrog 24.2 35 0.0015 14.4 5.1 51 17-69 187-238 (371)
109 2w25_A Probable transcriptiona 24.0 33 0.0014 14.5 2.0 79 113-206 52-133 (150)
110 1gpj_A Glutamyl-tRNA reductase 23.9 35 0.0015 14.3 7.1 57 17-75 164-221 (404)
111 2yzk_A OPRT, oprtase, orotate 23.9 20 0.00085 15.9 0.9 10 20-29 59-68 (178)
112 3e9m_A Oxidoreductase, GFO/IDH 23.6 36 0.0015 14.3 2.3 46 22-69 6-54 (330)
113 3hjh_A Transcription-repair-co 23.4 36 0.0015 14.3 6.0 163 18-194 11-182 (483)
114 1xj5_A Spermidine synthase 1; 23.3 36 0.0015 14.2 2.4 53 8-65 108-163 (334)
115 2o07_A Spermidine synthase; st 21.5 40 0.0017 14.0 2.3 42 19-65 97-138 (304)
116 1vko_A Inositol-3-phosphate sy 21.3 34 0.0014 14.5 1.6 78 22-106 80-174 (537)
117 2yw3_A 4-hydroxy-2-oxoglutarat 21.0 40 0.0017 14.0 5.4 51 17-71 58-109 (207)
118 1xpj_A Hypothetical protein; s 20.4 42 0.0018 13.9 5.7 14 57-70 68-81 (126)
119 3lhi_A Putative 6-phosphogluco 20.3 42 0.0018 13.9 3.2 41 2-42 10-56 (232)
120 1wly_A CAAR, 2-haloacrylate re 20.3 42 0.0018 13.9 5.7 56 10-68 132-192 (333)
121 1uir_A Polyamine aminopropyltr 20.0 43 0.0018 13.8 4.1 62 19-86 79-142 (314)
122 2fb9_A D-alanine:D-alanine lig 20.0 20 0.00084 15.9 0.2 37 143-184 251-287 (322)
No 1
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=100.00 E-value=0 Score=558.71 Aligned_cols=226 Identities=40% Similarity=0.648 Sum_probs=219.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 9878999999999998389978998879178999999999987328--70489618899999987315786551008800
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSV 78 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~--~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~i 78 (231)
||++++|++||++|++||++||+||||||||+++||++|+++++++ .++++||||.+|+.+|+++|||+.+++++++|
T Consensus 1 M~~~~~K~~aA~~A~~~V~~gmvvGLGtGsTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~a~~~gi~~~~~~~~~~i 80 (229)
T 1lk5_A 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAI 80 (229)
T ss_dssp CCHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 99899999999999964799999995864899999999999875255565078745699999999779945441225641
Q ss_pred EEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 798633000476605883165777778799861022699962303513455-7887267872575899999986322148
Q gi|254781054|r 79 DLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEIDQFGVNKTLSALKEVASCFG 157 (231)
Q Consensus 79 Di~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~p~~~~~v~~~l~~~~~~~G 157 (231)
|+|||||||||+++|+||||||||+|||++|++|++||||+|+||+|++|| +|||||||+||+|.++.+.++ .+|
T Consensus 81 Dv~iDGaDevd~~l~liKGGGGal~rEKivA~~a~~~i~I~D~~K~v~~Lg~~~plpvEV~p~~~~~v~~~l~----~~g 156 (229)
T 1lk5_A 81 DVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMPVPIEVIPQAWKAIIEELS----IFN 156 (229)
T ss_dssp EEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTSSCCEEEEECGGGHHHHHHHGG----GGT
T ss_pred EEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHH----HHC
T ss_conf 1784162443400576762006788899999853036999742210000578788065876367999999999----728
Q ss_pred CCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEEEEEC
Q ss_conf 98503772258863625788889982079868989999996279968664802476778999779984999879
Q gi|254781054|r 158 LNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231 (231)
Q Consensus 158 ~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~vl~k 231 (231)
+.+++|.+.++++||+|||||||+||+|++|.||.+++.+|++||||||||||.++++.++||+++| +++++|
T Consensus 157 ~~~~lr~~~~~~~p~vTD~GN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~GlF~~~a~~vii~~~~g-v~~i~k 229 (229)
T 1lk5_A 157 AKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREG-VKKLER 229 (229)
T ss_dssp CEEEECBCSSSSSBCCCTTSCEEEEEECSCCSCHHHHHHHHHTSTTEEEESEECSCCCEEEEEETTE-EEEEEC
T ss_pred CCCEEEEEECCCCCEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECEECCCCCEEEEECCCC-EEEEEC
T ss_conf 9955977753899637369986996788997999999999878986996486578699999971990-799719
No 2
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative; 2.09A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=0 Score=544.56 Aligned_cols=229 Identities=41% Similarity=0.621 Sum_probs=216.0
Q ss_pred CCHHHHHHHHHHHHH-HHCCCCCEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 987899999999999-8389978998879178999999999987328--7048961889999998731578655100880
Q gi|254781054|r 1 MDALQMKRNAARRAI-QYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENFCKIHHIPLHSPEDVSS 77 (231)
Q Consensus 1 M~~~~~K~~~a~~A~-~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~--~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~ 77 (231)
|..+++|+++|++|+ +||++||+|||||||||++||++|+++++++ .++++||||.+|+.+|.++|||+.+++++++
T Consensus 7 ~~md~~K~~aA~~A~d~~i~~gmviGLGtGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~T~~~a~~~Gi~v~~l~~~~~ 86 (244)
T 2f8m_A 7 HHMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSN 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCHHCCC
T ss_conf 32999999999999998589999999794499999999999987506766549974858999999885997117023573
Q ss_pred EEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCC-CC-CCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 07986330004766058831657777787998610226999623035134-55-78872678725758999999863221
Q gi|254781054|r 78 VDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDF-LG-RGMLPIEIDQFGVNKTLSALKEVASC 155 (231)
Q Consensus 78 iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~-Lg-~~plPVEV~p~~~~~v~~~l~~~~~~ 155 (231)
+|+|||||||||+++||||||||||+|||++|++|++||||+|+||+|++ || .|||||||+||+|..+.+.|++++..
T Consensus 87 iDv~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~~I~IvD~sK~v~~~lg~~~plPvEV~p~a~~~v~~~l~~~~~~ 166 (244)
T 2f8m_A 87 IDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTL 166 (244)
T ss_dssp BSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTCSSCEEEEECSTTHHHHHHHHTTSTTT
T ss_pred CCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHCCCEEEEEEHHEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHCC
T ss_conf 11687256300358241207862016788999604768999830005331258778835123452299999999998514
Q ss_pred CCCCCEEEEEECCCCCEECCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEEEEEC
Q ss_conf 48985037722588636257888899820798-68989999996279968664802476778999779984999879
Q gi|254781054|r 156 FGLNEELRLRRNGSGLFVSDGGNYIVDAFFGF-IPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231 (231)
Q Consensus 156 ~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~-i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~vl~k 231 (231)
.|+.+++|.+ +++||+|||||||+||+|+. +.||.+++.+|++||||||||||.++++.++||++||++++++|
T Consensus 167 ~g~~~~~r~~--~g~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~ipGVVe~GlF~~~~~~viv~~~dG~v~~l~k 241 (244)
T 2f8m_A 167 KGCTYKIRKR--NGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLNK 241 (244)
T ss_dssp TTCEEEECEE--TTEECCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEESEECSCCSEEEEECTTSCEEEEEC
T ss_pred CCCCEEEEEC--CCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEC
T ss_conf 6986367754--99831746998899930898768999999987379999810720686899999869972999835
No 3
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=536.20 Aligned_cols=225 Identities=34% Similarity=0.501 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHH---HCCCCCEEEECCCHHHHHHHHHHHHHHHCC------CEEEEEECHHHHHHHHHHCCCCCCCCC
Q ss_conf 78999999999998---389978998879178999999999987328------704896188999999873157865510
Q gi|254781054|r 3 ALQMKRNAARRAIQ---YVVDGMTLGMGTGSTAKEFMILLADKIANG------FRVQVIPSSRNTENFCKIHHIPLHSPE 73 (231)
Q Consensus 3 ~~~~K~~~a~~A~~---~v~~gmviGlGtGSTv~~~i~~L~~~~~~~------~~i~~v~tS~~t~~~a~~~gi~~~~l~ 73 (231)
++++|++||++|++ +|++||+|||||||||++||++|+++++++ +++++||||.+|+.+|.++|||+.+++
T Consensus 18 ~e~~K~~aA~~A~d~~~~v~~gmvIGLGTGSTv~~~i~~L~~~~~~~~l~~~~~~i~~VptS~~T~~~a~~~gi~l~~l~ 97 (264)
T 1xtz_A 18 LEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIE 97 (264)
T ss_dssp -CHHHHHHHHHHHHHHCCTTTCCEEEECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHHHHHHHHTTCEECCTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHCCCCEECHH
T ss_conf 99999999999998537679998999621799999999999876323453012237998534999999998699560443
Q ss_pred CCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC-CCCC---CCCCEEEEECCHHHHHHHH
Q ss_conf 08800798633000476605883165777778799861022699962303513-4557---8872678725758999999
Q gi|254781054|r 74 DVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD-FLGR---GMLPIEIDQFGVNKTLSAL 149 (231)
Q Consensus 74 ~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~-~Lg~---~plPVEV~p~~~~~v~~~l 149 (231)
++++||+|||||||||+++|+||||||||+|||++|++|++||||+|+||+|+ .||+ |||||||+||+|+++.+.|
T Consensus 98 ~~~~iDi~iDGADEVd~~l~lIKGGGGAllrEKivA~~ak~~IiIvDesK~v~~~LG~~~~~plPVEV~p~~~~~v~~~l 177 (264)
T 1xtz_A 98 QYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDL 177 (264)
T ss_dssp TCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSSBTSSCCSCEEEEECGGGHHHHHHHH
T ss_pred HCCCCCEEEECHHHHCCCCCEEEECCHHHHHHHHHHHHCCCEEEEEECCEEEHHHCCCCCCCCCCEEECHHHHHHHHHHH
T ss_conf 26852068706122155753787661887789999984066799970760644442777788866465445799999999
Q ss_pred HHHHHHCCCCCEEEEEE---CCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEE
Q ss_conf 86322148985037722---588636257888899820798689899999962799686648024767789997799849
Q gi|254781054|r 150 KEVASCFGLNEELRLRR---NGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGEC 226 (231)
Q Consensus 150 ~~~~~~~G~~~~lR~~~---~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~ 226 (231)
.+. ++.+.+|+|+ .+.|||+|||||||+||+|+++.||.+++.+|++||||||||||.++++.++||++||++
T Consensus 178 ~~~----~~~~~~~lR~~~~~k~gp~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~GlF~~~~~~vii~~~dG~v 253 (264)
T 1xtz_A 178 LEQ----LHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDGSV 253 (264)
T ss_dssp HHT----SCCSEEEECEETTTEEEECCCTTSCEEEEEECSSBSCHHHHHHHHHTSTTEEEESEECSCCSEEEEECTTSCE
T ss_pred HHH----HCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCE
T ss_conf 997----2798714612776557841725997699826899689999999970799898337127878989998189869
Q ss_pred EEEEC
Q ss_conf 99879
Q gi|254781054|r 227 LVLQK 231 (231)
Q Consensus 227 ~vl~k 231 (231)
++++|
T Consensus 254 ~i~~k 258 (264)
T 1xtz_A 254 EVTEK 258 (264)
T ss_dssp EEEES
T ss_pred EEEEE
T ss_conf 99982
No 4
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=100.00 E-value=0 Score=527.21 Aligned_cols=223 Identities=37% Similarity=0.586 Sum_probs=212.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 987899999999999838997899887917899999999998732-8704896188999999873157865510088007
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVD 79 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~-~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iD 79 (231)
|+|+++|+++|++|++||++||+|||||||||++||++|++++++ ++++.++|||.+|+.+|.++|+|+.++++++ +|
T Consensus 1 m~~~~~K~~aA~~A~~~i~~gmviGLGtGsTv~~~i~~L~~~~~~~~l~i~~v~tS~~t~~~a~~~gi~~~~~~~~~-iD 79 (226)
T 2pjm_A 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPLVTLDEYD-VD 79 (226)
T ss_dssp -CCHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHTTCCBCCTTTCC-CS
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC-CE
T ss_conf 99899999999999975799999994876999999999987565248708996162899999985498610233343-22
Q ss_pred EEECCHHCCCC-CCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 98633000476-605883165777778799861022699962303513455-7887267872575899999986322148
Q gi|254781054|r 80 LSIDGFDEIDS-RLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEIDQFGVNKTLSALKEVASCFG 157 (231)
Q Consensus 80 i~iDGaDevd~-~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~p~~~~~v~~~l~~~~~~~G 157 (231)
+|||||||||+ ++||||||||||+|||++|++|++||||+|+||+|++|| +|||||||+||+|.++.+.|++ +|
T Consensus 80 l~iDGADevd~~~l~lIKGgGgal~rEKiva~~a~~~i~I~D~sK~v~~Lg~~~plPvEV~p~a~~~v~~~l~~----~g 155 (226)
T 2pjm_A 80 IAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEVIPSAYRVVIRALSE----MG 155 (226)
T ss_dssp EEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEEEECGGGHHHHHHHHHH----TT
T ss_pred EEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCEEEEEECHHHHHHHHHHHH----CC
T ss_conf 89866411065663599747346898999997433499998621002225887973489806189999999998----19
Q ss_pred CCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEEEEEC
Q ss_conf 98503772258863625788889982079868989999996279968664802476778999779984999879
Q gi|254781054|r 158 LNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231 (231)
Q Consensus 158 ~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~vl~k 231 (231)
+++.+|++.+++|||+|||||||+||+| ++.||.+++.+|++||||||||||.++ +.++|+++|| +++++|
T Consensus 156 ~~~~~R~~~~~~gp~iTDnGN~IlD~~~-~i~dp~~l~~~L~~ipGVVe~GlF~~~-~~viv~~~dg-v~~i~k 226 (226)
T 2pjm_A 156 GEAVIRLGDRKRGPVITDNGNMIIDVFM-NIDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKG-VKTLKK 226 (226)
T ss_dssp CEEEECBCSSSSSBCBCTTSCEEEEEEC-CCSCHHHHHHHHHTSTTEEEESEECCC-SEEEEEETTE-EEEECC
T ss_pred CCEEEEEECCCCCCEEEECCCEEEEECC-CCCCHHHHHHHHHCCCCEEEECCCCCC-CEEEEECCCE-EEEEEC
T ss_conf 9737985326899738209977998278-999999999998779989847822677-8999980995-799719
No 5
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=100.00 E-value=0 Score=526.86 Aligned_cols=217 Identities=37% Similarity=0.542 Sum_probs=203.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 98789999999999983899789988791789999999999873287048961889999998731578655100880079
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231)
|||+++|+++|++|++||++||+||||||||+.+||++|+++. ...+++||||.+|+.+|+++|||+.++++++++|+
T Consensus 1 M~~~~~K~~aA~~A~~~ik~gm~IGLGtGsTv~~~i~~L~~~~--~~~~~~v~tS~~t~~~~~~~Gi~~~~l~~~~~iDi 78 (219)
T 1m0s_A 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTIK--DKIQGAVAASKESEELLRKQGIEVFNANDVSSLDI 78 (219)
T ss_dssp CCHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTTG--GGSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCE
T ss_conf 9989999999999997678999999475699999999998754--26615884868999999987997334443565453
Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 8633000476605883165777778799861022699962303513455-788726787257589999998632214898
Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEIDQFGVNKTLSALKEVASCFGLN 159 (231)
Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~p~~~~~v~~~l~~~~~~~G~~ 159 (231)
|||||||||+++||||||||||+|||++|++|++||+|+|+||+|++|| +|||||||+||+|.++.+.+++ +|++
T Consensus 79 aiDGaDevd~~l~lIKGgGgallrEKiva~~a~~~i~I~DesKlv~~Lg~~~plPvEV~p~~~~~v~~~l~~----lg~~ 154 (219)
T 1m0s_A 79 YVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLAA----LGGS 154 (219)
T ss_dssp EEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTTSSSCEEEEECGGGHHHHHHHHHH----TTCE
T ss_pred ECCCHHHCCCCCCCHHCCCHHHHHHHHHHHHHHCEEEEECCCHHHHHCCCCCCEEEEECHHHHHHHHHHHHH----CCCC
T ss_conf 236455308475862158388889899998500279995244016653998876899726789999999998----1899
Q ss_pred CEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEE-CCCCCEEEEECCCCEEEEEE
Q ss_conf 503772258863625788889982079868989999996279968664802-47677899977998499987
Q gi|254781054|r 160 EELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLF-INMVDCAIIGTSDGECLVLQ 230 (231)
Q Consensus 160 ~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF-~~~~d~viv~~~dG~~~vl~ 230 (231)
+..| +||+|||||||+||+|+++.||.+|+.+|++|||||||||| .++++.+++|++|| +++++
T Consensus 155 ~~~r------~~~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~GlF~~~~~~~vivg~~~G-v~~ie 219 (219)
T 1m0s_A 155 PEYR------EGVVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEG-AKVID 219 (219)
T ss_dssp EEEC------TTCCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEESEECTTCCSEEEEEETTE-EEEEC
T ss_pred CCCC------CCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEEECEECCCCCCEEEEECCCC-CEECC
T ss_conf 5237------87473899979980389879999999997189989613847799889999976995-18829
No 6
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=100.00 E-value=0 Score=524.60 Aligned_cols=220 Identities=46% Similarity=0.710 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 78999999999998389978998879178999999999987328--7048961889999998731578655100880079
Q gi|254781054|r 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231)
Q Consensus 3 ~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~--~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231)
.+++|++||++|++||++||+||||||||+.+||++|+++++++ .++.+||||.+|+.+|+++|+|+.++++ .++|+
T Consensus 5 ~~~~K~~aa~~A~~~V~~gmvIGLGtGsTv~~~i~~L~~~~~~~~l~~i~~v~sS~~t~~~a~~~gi~l~~~~~-~~iDv 83 (227)
T 1uj6_A 5 LESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDL 83 (227)
T ss_dssp THHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCT-TCEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCC-CCEEE
T ss_conf 99999999999997579999999686379999999999865435556417733868899999965984035661-10145
Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 86330004766058831657777787998610226999623035134557887267872575899999986322148985
Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNE 160 (231)
Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~ 160 (231)
|||||||||+++|+||||||||+|||++|++|++||||+|+||+|++||+|||||||+|++|.++++.+++ +|+++
T Consensus 84 ~iDGADevd~~l~liKGgGGal~rEKivA~~a~~~i~I~DesK~v~~Lg~~plPvEV~p~~~~~v~~~l~~----lg~~~ 159 (227)
T 1uj6_A 84 AIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGRGPVPVEIVPFGYRATLKAIAD----LGGEP 159 (227)
T ss_dssp EEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHHHT----TTCCE
T ss_pred EECCCHHHCCCCCEEECCCHHHHHHHHHHHHHHCEEEEECHHHHHHHCCCCCCCEEEECHHHHHHHHHHHH----CCCCE
T ss_conf 64153221755002423618889999999850117999622240232289984548602069999999997----39972
Q ss_pred EEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEEEE
Q ss_conf 037722588636257888899820798689899999962799686648024767789997799849998
Q gi|254781054|r 161 ELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVL 229 (231)
Q Consensus 161 ~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~vl 229 (231)
++|++ +++||+|||||||+||+|+++.||.+++.+|++||||||||||.++++.+++|+++|..+++
T Consensus 160 ~lR~~--~~~p~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~GlF~~~~~~viv~~~~Gv~~l~ 226 (227)
T 1uj6_A 160 ELRMD--GDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEELL 226 (227)
T ss_dssp EECEE--TTEECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEESEECSCCSEEEEEETTEEEEEC
T ss_pred EECCC--CCCCEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCEEEEC
T ss_conf 88227--99545837998899952799799999999985799898126005868899997499259945
No 7
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structural genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=100.00 E-value=0 Score=526.61 Aligned_cols=216 Identities=34% Similarity=0.442 Sum_probs=204.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 87899999999999838997899887917899999999998732870489618899999987315786551008800798
Q gi|254781054|r 2 DALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLS 81 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~ 81 (231)
+|+++|+++|++|++||++||+||||||||+.+||++|+++. .....+||||.+|+.+|+++|||+.++++++++|+|
T Consensus 8 ~~~~~K~~aa~~A~~~v~~gmvIGLGtGSTv~~~i~~L~~~~--~~~~~vv~tS~~t~~~~~~~Gi~l~~l~~~~~iDl~ 85 (224)
T 3kwm_A 8 NQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYR--DKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLY 85 (224)
T ss_dssp CHHHHHHHHHHHHHTTCCSSEEEEECCSHHHHHHHHHGGGCT--TTEEEEEESCHHHHHHHHHTTCCBCCHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCC--CCCCEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 999999999999998558999999586699999999999606--678768618699999998628975361338866999
Q ss_pred ECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 63300047660588316577777879986102269996230351345578872678725758999999863221489850
Q gi|254781054|r 82 IDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEE 161 (231)
Q Consensus 82 iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~ 161 (231)
||||||||+++|+||||||||+|||++|++|++||||+|+||+|++||+|||||||+||+|.++.+.+++ +|+++.
T Consensus 86 iDGADeVd~~l~lIKGGGgallrEKiva~~a~~~iii~DesK~v~~Lg~~plPVEV~p~a~~~v~~~l~~----lg~~~~ 161 (224)
T 3kwm_A 86 IDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVK----LGGQPV 161 (224)
T ss_dssp EECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBCSSCEEEEECGGGHHHHHHHHHH----TTCEEE
T ss_pred EECCHHHCCCCCEEECCCHHHHHHHHHHHHHHCEEEEECCCCEECCCCCCCEEEEECHHHHHHHHHHHHH----CCCCCE
T ss_conf 9770322877558831617899989999962137999662313023499868899727789999999998----179834
Q ss_pred EEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEE-CCCCCEEEEECCCCEEEEE
Q ss_conf 3772258863625788889982079868989999996279968664802-4767789997799849998
Q gi|254781054|r 162 LRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLF-INMVDCAIIGTSDGECLVL 229 (231)
Q Consensus 162 lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF-~~~~d~viv~~~dG~~~vl 229 (231)
+| +||+|||||||+||+|++|+||.+++.+|++|||||||||| .++++.+++|++||+++++
T Consensus 162 ~r------~p~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~GlF~~~~~~~viv~~~dG~v~vl 224 (224)
T 3kwm_A 162 YR------EQTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVVL 224 (224)
T ss_dssp EC------TTCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEESEECSSCCSEEEEECTTSCEEEC
T ss_pred EC------CCEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECEECCCCCCEEEEEECCCCEEEC
T ss_conf 33------4506389987998268987999999999867999961484659988899999389838979
No 8
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=100.00 E-value=0 Score=527.72 Aligned_cols=218 Identities=38% Similarity=0.536 Sum_probs=206.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 98789999999999983899789988791789999999999873287048961889999998731578655100880079
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231)
|||+++|+++|++|++||++||+||||||||+.+||++|+++. +..+.+||||.+|+++|+++|||+.++++++++|+
T Consensus 1 M~~~~~K~~~a~~A~~~i~~gmviGLGtGsTv~~~i~~L~~~~--~~~~~~v~ss~~t~~~a~~~Gi~l~~~~~~~~iDi 78 (219)
T 1o8b_A 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMK--GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGI 78 (219)
T ss_dssp ----------------------CEEECCSCC-----------------CCEEESCCC------------CCGGGCSCEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHCCCCCCHHHCCCCCE
T ss_conf 9989999999999997479999998686699999999998622--77607875858999999871666568656787676
Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 86330004766058831657777787998610226999623035134557887267872575899999986322148985
Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNE 160 (231)
Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~ 160 (231)
|||||||||+++|+||||||||+|||++|++|++||+|+|+||+|++||+|||||||+|++|.++.+.|++ +|+.+
T Consensus 79 aiDGaDevd~~l~liKGgGgal~rEKiva~~a~~~iiI~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~----lg~~~ 154 (219)
T 1o8b_A 79 YVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVK----LGGRP 154 (219)
T ss_dssp EEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBTSSCEEEEECGGGHHHHHHHHHH----TTCEE
T ss_pred EEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCEEEEECHHHHHHHHHHHHH----HCCCC
T ss_conf 75173021022435642689999888999835256999742134302699856689637789999999998----27984
Q ss_pred EEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCC-CCEEEEECCCCEEEEEEC
Q ss_conf 03772258863625788889982079868989999996279968664802476-778999779984999879
Q gi|254781054|r 161 ELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINM-VDCAIIGTSDGECLVLQK 231 (231)
Q Consensus 161 ~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~-~d~viv~~~dG~~~vl~k 231 (231)
.+| +||+|||||||+||+|.++.||.+++.+|++||||||||||.++ ++.+++|+++| +++++|
T Consensus 155 ~~r------~p~vTdnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~GlF~~~~~~~~ii~~~~G-v~~i~k 219 (219)
T 1o8b_A 155 EYR------QGVVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDG-VKTIVK 219 (219)
T ss_dssp EEC------TTCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEESEECSSCCSEEEEEETTE-EEEEC-
T ss_pred CCC------CCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCE-EEEEEC
T ss_conf 357------88575899889981289879999999998379989821702798689999980994-799829
No 9
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, structural genomics; HET: 5RP; 2.30A {Bartonella henselae str}
Probab=100.00 E-value=0 Score=508.97 Aligned_cols=230 Identities=44% Similarity=0.774 Sum_probs=225.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 98789999999999983899789988791789999999999873287048961889999998731578655100880079
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231)
||++|+|+++|++|++||+|||+||||||||+.+|+++|++++++++++++||||..|+.+|.++|+|+.+++++.++|+
T Consensus 22 m~~e~~K~~~A~~A~~~V~dG~~IGLGsGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~~~~~Gi~~~~~~~~~~iDv 101 (255)
T 3hhe_A 22 MNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQYSEQLCHKFGVPISTLEKIPELDL 101 (255)
T ss_dssp -CHHHHHHHHHHHHHTTCCTTEEEEECCSHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHTTCCBCCTTTCCSBSE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEECCCCCCCCE
T ss_conf 79999999999999975789989997872699999999999986367459985788999999976982551244674017
Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 86330004766058831657777787998610226999623035134557887267872575899999986322148985
Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNE 160 (231)
Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~ 160 (231)
|||||||||+++++||||||||+|||+++++|+++|+|+|+||+|++|+.+|+||||+|++|..+.+.+++.+..+++.+
T Consensus 102 afdGaDevd~~~~likggggal~~EK~~a~~A~~~IviaD~sK~v~~l~~~~lPvev~~~~~~~~~~~~~~~~~~~~l~~ 181 (255)
T 3hhe_A 102 DIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLGAFALPIEVNPFGIHATRIAIEKAADNLGLSG 181 (255)
T ss_dssp EEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEECHHHEEHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCC
T ss_conf 87246522778637835889999988999735113687332025320487420079866427999999998655427788
Q ss_pred EEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEEEEE
Q ss_conf 0377225886362578888998207986898999999627996866480247677899977998499987
Q gi|254781054|r 161 ELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQ 230 (231)
Q Consensus 161 ~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~vl~ 230 (231)
++|+|.++++||+|||||||+||+|+++.||.+++.+|++||||||||||.++++.++||++||++++++
T Consensus 182 ~~~~r~~~~~P~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~GlF~~~~~~viia~~dG~v~vl~ 251 (255)
T 3hhe_A 182 EITLRMNGDDPFKTDGGHFIFDAFWGRILQPKLLSEALLAIPGVVEHGLFLGLASRAIVAMADSQIKVLE 251 (255)
T ss_dssp CEEECEETTEECCCTTSCEEEEECCSCCSCHHHHHHHHHTSTTEEEESEECSCCCEEEEECTTSCEEEEC
T ss_pred EEEEECCCCCCEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECEECCCCCEEEEEECCCCEEEEC
T ss_conf 1798417998527069978997648987999999999857999970370268788899993899889957
No 10
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=97.34 E-value=0.0031 Score=39.55 Aligned_cols=130 Identities=17% Similarity=0.176 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHCCCCCE-EEECCCHHHHHHHHHHHHHHHCCC--EEEEEEC-----HHHHHHHHHHCCCCCCCCCC--
Q ss_conf 9999999999983899789-988791789999999999873287--0489618-----89999998731578655100--
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMT-LGMGTGSTAKEFMILLADKIANGF--RVQVIPS-----SRNTENFCKIHHIPLHSPED-- 74 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~--~i~~v~t-----S~~t~~~a~~~gi~~~~l~~-- 74 (231)
+.++..+..|.++|++|++ +-.|..+||..++....+ .|. ++.++-| +..+...+.+.|||+.-+.+
T Consensus 106 ~a~~~I~~~~~~~I~dg~~ILTh~~S~tV~~~l~~A~~---~gk~f~V~v~EsrP~~~G~~la~~L~~~GI~vt~I~Dsa 182 (315)
T 3ecs_A 106 LSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVA---AKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAA 182 (315)
T ss_dssp THHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHT---TTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGGG
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHH
T ss_conf 99999999988567999999974880999999999998---699089999579986327999999997799879976579
Q ss_pred ----CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCC--CCCCCCCEEEE
Q ss_conf ----88007986330004766058831657777787998610226999623035134--55788726787
Q gi|254781054|r 75 ----VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDF--LGRGMLPIEID 138 (231)
Q Consensus 75 ----~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~--Lg~~plPVEV~ 138 (231)
..++|..+=|||-|..|+.++---|-..+- -.-.....-|+++++..|+++. ++...+|.|.-
T Consensus 183 v~~~m~~vd~VlvGAd~V~~nG~v~nkiGT~~iA-~~Ak~~~vPvyV~aes~Kf~~~~~~~~~~i~~e~~ 251 (315)
T 3ecs_A 183 VGYIMEKADLVIVGAEGVVENGGIINKIGTNQMA-VCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFK 251 (315)
T ss_dssp HHHHGGGCSEEEEECSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGT
T ss_pred HHHHHHCCCEEEEEEEEEECCCCEEEHHHHHHHH-HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEC
T ss_conf 9999750888998201896388885564189999-99876399769832565676645565566761202
No 11
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.124.1.5
Probab=97.32 E-value=0.0069 Score=37.38 Aligned_cols=121 Identities=23% Similarity=0.207 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEE--C-----HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999999999983899789-988791789999999999873287048961--8-----899999987315786551008
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIP--S-----SRNTENFCKIHHIPLHSPEDV 75 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~--t-----S~~t~~~a~~~gi~~~~l~~~ 75 (231)
.+..+.+|..+.++|++|++ +=.+-.+|+..++....++ +.+.+++. | +.+.+..+.+.|||+.-..+.
T Consensus 93 ~~a~~~ia~~~~~~i~dg~~IlT~~~S~tv~~~l~~a~~~---g~~~~V~v~EsrP~~~G~~lA~eL~~~Gi~vtlI~D~ 169 (276)
T 1vb5_A 93 EEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKER---KKRFKVILTESSPDYEGLHLARELEFSGIEFEVITDA 169 (276)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHT---TCCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC---CCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECHH
T ss_conf 9999999999887758999899979808999999999987---9957999944897754099999998759980896478
Q ss_pred ------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHH-HHCCEEEEEEHHHCCCCCC
Q ss_conf ------80079863300047660588316577777879986-1022699962303513455
Q gi|254781054|r 76 ------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAH-AASRFIVIGDESKRVDFLG 129 (231)
Q Consensus 76 ------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~-~a~~~I~i~D~sK~v~~Lg 129 (231)
.+.|+.+=|||-|..|+..+---|-..+- ++|. ...-|+++++.+|+.+..-
T Consensus 170 a~~~~m~~~d~VlvGAd~i~~nG~v~nkiGT~~lA--~~Ak~~~iPvyV~a~~~K~~~~~~ 228 (276)
T 1vb5_A 170 QMGLFCREASIAIVGADMITKDGYVVNKAGTYLLA--LACHENAIPFYVAAETYKFHPTLK 228 (276)
T ss_dssp GHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHH--HHHHHTTCCEEEECCGGGBCSSCC
T ss_pred HHHHHHHHCCEEEEEEEEEECCCCEEEHHHHHHHH--HHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 99998530787998524895489886523079999--999856998699703455577778
No 12
>3a11_A Translation initiation factor EIF-2B, delta subunit; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis}
Probab=97.22 E-value=0.012 Score=35.96 Aligned_cols=130 Identities=17% Similarity=0.117 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-----HHHHHHHHHHCCCCCCCCCCC---
Q ss_conf 9999999999983899789-9887917899999999998732870489618-----899999987315786551008---
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIPS-----SRNTENFCKIHHIPLHSPEDV--- 75 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-----S~~t~~~a~~~gi~~~~l~~~--- 75 (231)
+..+..+..+.++|++|++ +=.|-.+|+.-++....++- ..+++.+.-| +..|...+.+.|||+.-..+.
T Consensus 126 ~a~~~I~~~g~~~I~~g~~ILT~~~S~tv~~~l~~a~~~g-k~~~V~v~EsrP~~qGr~~a~eL~~~gI~~t~I~Dsa~~ 204 (338)
T 3a11_A 126 KALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQG-KDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAAR 204 (338)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHTT-CCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGTT
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEECHHHHH
T ss_conf 9999999987775589987998369689999999999879-975899974797413507799998379985895267899
Q ss_pred ---CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCC-CCCCCEEE
Q ss_conf ---8007986330004766058831657777787998-61022699962303513455-78872678
Q gi|254781054|r 76 ---SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLG-RGMLPIEI 137 (231)
Q Consensus 76 ---~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg-~~plPVEV 137 (231)
.++|..+=|||-|..|+..+--=|...+- ++| .....|++.+..+|+.+..- ...+|+|-
T Consensus 205 ~~m~~vd~VlvGAd~v~~nG~v~nkiGT~~iA--~~Ak~~~vPv~V~a~t~k~~~~~~~~~~i~iE~ 269 (338)
T 3a11_A 205 HYMKMTDKVVMGADSITVNGAVINKIGTALIA--LTAKEHRVWTMIAAETYKFHPETMLGQLVEIEM 269 (338)
T ss_dssp TTGGGCSEEEECCSEECTTSCEEEETTHHHHH--HHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCB
T ss_pred HHHHCCCEEEEEEEEEECCCCEEECCCHHHHH--HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99730884998423786179874433078999--987755986799704555676678987544677
No 13
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit delta; structural genomics, PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.124.1.5
Probab=96.74 E-value=0.03 Score=33.45 Aligned_cols=130 Identities=19% Similarity=0.043 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCH---------HHHHHHHHHHHHHHCCCEEEEEE--C------HHHHHHHHHHCCC
Q ss_conf 99999999999838997899887917---------89999999999873287048961--8------8999999873157
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMGTGS---------TAKEFMILLADKIANGFRVQVIP--S------SRNTENFCKIHHI 67 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlGtGS---------Tv~~~i~~L~~~~~~~~~i~~v~--t------S~~t~~~a~~~gi 67 (231)
+..+..++.+.+++++|++|=-=.-| |+...+....+ .|..+.++. | +.-|+..+.+.||
T Consensus 131 ~a~~~I~~~~~~~i~~g~~ILThc~sg~lat~~~gta~~~i~~a~~---~gk~~~V~v~EtRP~~qG~rlta~eL~~~gI 207 (351)
T 1t5o_A 131 ERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVE---QGKEIRVIACETRPLNQGSRLTCWELMEDGI 207 (351)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHH---TTCCCEEEEECCTTTTHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCHHHHHHHHHHCCC
T ss_conf 9999999997876259988998269870000035568887888620---7953799981678865256899999997599
Q ss_pred CCCCCCCC--------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEE
Q ss_conf 86551008--------8007986330004766058831657777787998610226999623035134557887267872
Q gi|254781054|r 68 PLHSPEDV--------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQ 139 (231)
Q Consensus 68 ~~~~l~~~--------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p 139 (231)
|+.-..+. ..+|..|=|||-|..|+-+-|=|-.-+. -.-.+...-|++.+..+|+........+|+|--+
T Consensus 208 ~~t~I~Dsa~~~~m~~~~Vd~VivGAd~v~~nG~~nkiGT~~lA--~~Ak~~~vP~yV~a~~~k~~~~~~~~~i~iE~r~ 285 (351)
T 1t5o_A 208 DVTLITDSMVGIVMQKGMVDKVIVGADRIVRDAVFNKIGTYTVS--VVAKHHNIPFYVAAPKATFDWERTAKDVVIEERP 285 (351)
T ss_dssp CEEEECGGGHHHHHHTTCCSEEEECCSEEETTEEEEETTHHHHH--HHHHHTTCCEEEECCGGGBCTTCCGGGCCCCBCC
T ss_pred CEEEEEHHHHHHHHHHCCCCEEEECCCEEECCCCCCCCCHHHHH--HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 73898430689998735754698512367138810101578999--9999749988999225554756784533324578
No 14
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=96.36 E-value=0.057 Score=31.67 Aligned_cols=131 Identities=20% Similarity=0.178 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEC--CC-------HHHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCC
Q ss_conf 99999999999838997899887--91-------7899999999998732870489618--------8999999873157
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMG--TG-------STAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHI 67 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlG--tG-------STv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi 67 (231)
+..+..++.+.+++++|.+|=-= || .|+..++....+ .|.+.+++.+ +.-|+..+.+.||
T Consensus 133 ~~~~~i~~~g~~~i~~g~~iLTh~~s~~lat~~~gTal~~i~~a~~---~gk~~~V~v~EtrP~~qG~~lta~~L~~~GI 209 (347)
T 1t9k_A 133 EVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVE---SGKRIRVFADETRPYLQGARLTAWELMKDGI 209 (347)
T ss_dssp HHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHH---TTCCEEEEEECCTTTTHHHHTHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHEECCCCHHHHEEEEEE---CCCEEEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999855775348988998558751310134320102367750---6954799962688766316889999865482
Q ss_pred CCCCCCCC--------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEE
Q ss_conf 86551008--------800798633000476605883165777778799861022699962303513455-788726787
Q gi|254781054|r 68 PLHSPEDV--------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEID 138 (231)
Q Consensus 68 ~~~~l~~~--------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~ 138 (231)
|+.-.-+. ..+|..+=|||-|..|+.++--=|-..+- -+-.....-|++.+..+|+.+..- ...+|+|--
T Consensus 210 ~~tlI~D~a~~~~m~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~A-l~A~~~~vPfyV~a~~~k~~~~~~~~~~i~ie~r 288 (347)
T 1t9k_A 210 EVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEER 288 (347)
T ss_dssp EEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBC
T ss_pred EEEEEECCHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCHHHHH-HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 289996548888865344007885010024689788730539999-9988649846997123543777788142765156
Q ss_pred E
Q ss_conf 2
Q gi|254781054|r 139 Q 139 (231)
Q Consensus 139 p 139 (231)
+
T Consensus 289 ~ 289 (347)
T 1t9k_A 289 R 289 (347)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 15
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=96.35 E-value=0.0023 Score=40.33 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCE-------EEEEEC----HHHHHHHHHHCC-------
Q ss_conf 999999999983899789988791789999999999873-2870-------489618----899999987315-------
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFR-------VQVIPS----SRNTENFCKIHH------- 66 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~-------i~~v~t----S~~t~~~a~~~g------- 66 (231)
.+++.|..|+..+++|+++-+|.|.- ...-.|+++.. .... +-..|. |...........
T Consensus 7 ~~E~ma~~aArel~dg~~v~~GiGiP--~laa~lA~~~~~p~~~l~~e~G~~g~~p~~~~~s~~d~~~~~~~~~~~~~~~ 84 (260)
T 1poi_B 7 NKEMQAVTIAKQIKNGQVVTVGTGLP--LIGASVAKRVYAPDCHIIVESGLMDCSPVEVPRSVGDLRFMAHCGCIWPNVR 84 (260)
T ss_dssp HHHHHHHHHHTTCCTTCEEECCSSHH--HHHHHHHHHTTCTTCEEEETTTEEEECCSSCCSSTTCHHHHTSEEEECCHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEECCHHH--HHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCCHHHHCCCCEECCCCE
T ss_conf 89999999997467999999924188--9999999973599749997886737768888765573133145632247522
Q ss_pred ---CCCCCCCCCCEEEEEECCHHCCCCCCEE--------------EECCCHHHHHHHHHHHHHCCEEEEEEHHH--CCCC
Q ss_conf ---7865510088007986330004766058--------------83165777778799861022699962303--5134
Q gi|254781054|r 67 ---IPLHSPEDVSSVDLSIDGFDEIDSRLRL--------------IKGYGGALLREKIIAHAASRFIVIGDESK--RVDF 127 (231)
Q Consensus 67 ---i~~~~l~~~~~iDi~iDGaDevd~~l~l--------------IKGgGgAl~rEKiva~~a~~~I~i~D~sK--~v~~ 127 (231)
..+.++-.-.++|++|=||=|||..+|+ +-|.|||.- +++.++++|+. .++| +|+.
T Consensus 85 ~~~~~~F~~~~~G~~dv~fLGa~QID~~GnvN~s~ig~~~~P~~rlpG~GGa~d----i~~~a~~ii~~-~h~~r~fV~~ 159 (260)
T 1poi_B 85 FVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG----IATYSNTIIMM-QHEKRRFMNK 159 (260)
T ss_dssp HHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH----HHHHSCEEEEC-CCCTTTBCSS
T ss_pred ECCHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHCCCCEEEEE-CCCCCCCCCC
T ss_conf 050888899866897679967578283457230100675578831016776105----55358657984-2575445664
Q ss_pred CC
Q ss_conf 55
Q gi|254781054|r 128 LG 129 (231)
Q Consensus 128 Lg 129 (231)
+.
T Consensus 160 vd 161 (260)
T 1poi_B 160 ID 161 (260)
T ss_dssp CS
T ss_pred CC
T ss_conf 40
No 16
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str} SCOP: c.124.1.8
Probab=95.89 E-value=0.0085 Score=36.82 Aligned_cols=171 Identities=10% Similarity=-0.007 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC----------H----HHHHHHHHH
Q ss_conf 78999999999998----38997899887917899999999998732870489618----------8----999999873
Q gi|254781054|r 3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS----------S----RNTENFCKI 64 (231)
Q Consensus 3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t----------S----~~t~~~a~~ 64 (231)
.+..++.+++.|++ +++++++||+|.|+|+..+++.|.... ...++++||. + .-+..+|.+
T Consensus 39 ~~~~~~~l~~aAA~~l~~~l~~~~~iGv~wG~Tl~~~~~~l~~~~-~~~~~~~v~l~Gg~~~~~~~~~~~~~~~~~lA~~ 117 (266)
T 3efb_A 39 EETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAG-QSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAK 117 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCCS-SCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCC-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 168999999999999998678999899818888999999702115-7888089981477776667765879999999998
Q ss_pred CCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHH----HHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEEC
Q ss_conf 1578655100880079863300047660588316577777879----986102269996230351345578872678725
Q gi|254781054|r 65 HHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKI----IAHAASRFIVIGDESKRVDFLGRGMLPIEIDQF 140 (231)
Q Consensus 65 ~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKi----va~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~ 140 (231)
++-+...+. ...++|-...-+ ++..|+. ++.+.+-=+.++- +-..+... +.....+
T Consensus 118 ~~~~~~~l~----aP~~v~s~~~~~-----------~l~~~~~v~~~~~~~~~~dial~G----IG~~~~~~-~~~~~~~ 177 (266)
T 3efb_A 118 LKGESHLAD----FPALLDNPLIRN-----------GIMQSQHFKTISAYWDNLDIALVG----IGSPAIRD-GANWHAF 177 (266)
T ss_dssp TTCEECCCC----SBSBCSSHHHHH-----------HHHTSHHHHHHHHHHHTCSEEEEC----CBCCC----------C
T ss_pred HCCCCCCCC----CCCCCCCHHHHH-----------HHHHCHHHHHHHHHHHCCCEEEEC----CCCCCCCC-CCCCCCC
T ss_conf 189643667----744589989999-----------998666999999987359999991----78787656-5343678
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEC
Q ss_conf 75899999986322148985037722588636257888899820798-68989999996279968664
Q gi|254781054|r 141 GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGF-IPDPQIISGELCNIPGVIEH 207 (231)
Q Consensus 141 ~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~-i~dp~~le~~L~~IpGVVe~ 207 (231)
-.....+.+.+ .|.-.++ .+.|+..+||.+ |+.+.. ...+ .+ .+|+++|=||-.
T Consensus 178 ~~~~~~~~l~~----~gavGdi------~~~f~d~~G~~v-~~~~~~r~igi-~l-~~lr~i~~~I~v 232 (266)
T 3efb_A 178 YGGEESDDLNA----RQVAGDI------CSRFFDIHGAMV-ETNMSEKTLSI-EM-NKLKQARYSIGI 232 (266)
T ss_dssp SCHHHHHHHHH----TTCCEEE------TTEEECTTSCBC-CCTTGGGBCBC-CH-HHHHTSSEEEEE
T ss_pred CCHHHHHHHHH----HCHHHHH------HHHHHCCCCCCC-CCCCCCCEECC-CH-HHHCCCCCEEEE
T ss_conf 88899999977----2739999------850422589997-76454534216-87-896468968999
No 17
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=95.84 E-value=0.0073 Score=37.25 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCCCEEEECC---CHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999999998389978998879---1789999999999873287048961
Q gi|254781054|r 7 KRNAARRAIQYVVDGMTLGMGT---GSTAKEFMILLADKIANGFRVQVIP 53 (231)
Q Consensus 7 K~~~a~~A~~~v~~gmviGlGt---GSTv~~~i~~L~~~~~~~~~i~~v~ 53 (231)
|..-+++|+++|+|||+|++|. ..+-..++.+|.++-.. +++.++
T Consensus 4 K~~s~~eAv~~IkDG~~va~gGf~~~~~P~al~~al~~~~~k--~Ltli~ 51 (220)
T 1k6d_A 4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVR--DLTLIA 51 (220)
T ss_dssp SEECHHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHHTCC--SEEEEC
T ss_pred CCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCC--CCEEEE
T ss_conf 307499999459998999998804115699999999982999--846873
No 18
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomics, montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli O157} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=95.80 E-value=0.026 Score=33.85 Aligned_cols=38 Identities=32% Similarity=0.366 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCCCEEEECC---C-HHHHHHHHHHHHHHH
Q ss_conf 9999999998389978998879---1-789999999999873
Q gi|254781054|r 7 KRNAARRAIQYVVDGMTLGMGT---G-STAKEFMILLADKIA 44 (231)
Q Consensus 7 K~~~a~~A~~~v~~gmviGlGt---G-STv~~~i~~L~~~~~ 44 (231)
|-+-|++|+++|+|||+||++. | .+-..++++|++|..
T Consensus 14 kv~saeEAa~~IkdG~tV~~sGF~~~~g~P~al~~ALa~r~~ 55 (531)
T 2ahu_A 14 PVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYK 55 (531)
T ss_dssp CBCCHHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 502199999659998999983776776798999999999899
No 19
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae TIGR4} SCOP: c.124.1.8
Probab=95.67 E-value=0.015 Score=35.34 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHH----HHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------------HHHHHHHHHHCC
Q ss_conf 899999999999----838997899887917899999999998732870489618-------------899999987315
Q gi|254781054|r 4 LQMKRNAARRAI----QYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------------SRNTENFCKIHH 66 (231)
Q Consensus 4 ~~~K~~~a~~A~----~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------------S~~t~~~a~~~g 66 (231)
...++..++.|+ ++++++++||+|+|+|...+++++.... ..++++||. ..-...+|+++|
T Consensus 37 ~~~~~~l~~~aA~~l~~~l~~~~~IGv~wG~Tl~~~~~~l~~~~--~~~~~vv~l~Gg~~~~~~~~~~~~i~~~lA~~~~ 114 (266)
T 2gnp_A 37 TILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKS--VRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFH 114 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCCC--CSSCEEEESBCCCTTSCGGGSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCC--CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 79999999999999998577899899938888999999717557--6773488247887777665689999999999809
Q ss_pred CCCCCC
Q ss_conf 786551
Q gi|254781054|r 67 IPLHSP 72 (231)
Q Consensus 67 i~~~~l 72 (231)
-+...+
T Consensus 115 ~~~~~l 120 (266)
T 2gnp_A 115 GECTFM 120 (266)
T ss_dssp CEECCC
T ss_pred CEEEEC
T ss_conf 966522
No 20
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens TC1}
Probab=95.50 E-value=0.016 Score=35.06 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 878999999999998----38997899887917899999999998
Q gi|254781054|r 2 DALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADK 42 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~ 42 (231)
+.++..+.+++.|++ +++++++||+|+|+|+..+++.|...
T Consensus 34 ~~~~~~~~v~~~aA~~l~~~l~~~~~iGv~wG~Tl~~~~~~l~~~ 78 (267)
T 3nze_A 34 NEAETLDRVAMQAARTIGPLVDSNAIIGVAWGATLSAVSRHLTRK 78 (267)
T ss_dssp CHHHHHHHHHHHHHHHHGGGCCSSCEEEECCSHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCC
T ss_conf 848999999999999999868899989985888899999973312
No 21
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114}
Probab=95.33 E-value=0.017 Score=35.03 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------------HHHHHHHHHHC
Q ss_conf 78999999999998----38997899887917899999999998732870489618-------------89999998731
Q gi|254781054|r 3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------------SRNTENFCKIH 65 (231)
Q Consensus 3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------------S~~t~~~a~~~ 65 (231)
.++..+.+|+.|++ .++++++||+|.|+|+..+++.+... ...++++||. ..-++..|+++
T Consensus 34 ~~~~~~~v~~~aA~~l~~~l~~~~~iGv~wG~Tl~~~~~~l~~~--~~~~~~vv~l~Gg~~~~~~~~~~~~i~~~lA~~~ 111 (267)
T 3kv1_A 34 TNEQRKQVAALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGIV--TQRNARFVSAIGGTHRSGDIINADHICRRLAKKY 111 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHCCCCC--CCCCCEEEESBCBCC----CCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCC--CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 36999999999999999757689889994788999999835766--7789569946887677767568999999999982
Q ss_pred CCCCCC
Q ss_conf 578655
Q gi|254781054|r 66 HIPLHS 71 (231)
Q Consensus 66 gi~~~~ 71 (231)
|=+...
T Consensus 112 gg~~~~ 117 (267)
T 3kv1_A 112 GGSSET 117 (267)
T ss_dssp TCEEEC
T ss_pred CCEEEE
T ss_conf 998999
No 22
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Porphyromonas gingivalis W83}
Probab=95.19 E-value=0.053 Score=31.90 Aligned_cols=124 Identities=12% Similarity=0.128 Sum_probs=75.6
Q ss_pred CCHH---HHHHHHHHHH-HHHCCCCCEEEECCC-HHHHHHHHHHHHHHHCCCEEEEEE----------------------
Q ss_conf 9878---9999999999-983899789988791-789999999999873287048961----------------------
Q gi|254781054|r 1 MDAL---QMKRNAARRA-IQYVVDGMTLGMGTG-STAKEFMILLADKIANGFRVQVIP---------------------- 53 (231)
Q Consensus 1 M~~~---~~K~~~a~~A-~~~v~~gmviGlGtG-STv~~~i~~L~~~~~~~~~i~~v~---------------------- 53 (231)
||-. +.|..-|++| +++|+|||+|.+|.+ .+-..++++|.++..+-.+++.+.
T Consensus 1 m~~~~~y~~K~~sa~EAia~~IkdGdtI~~~g~~g~P~~L~~aL~~r~~~~~~ltl~~~~~~g~~~~~~~~~~~~i~~~~ 80 (439)
T 3d3u_A 1 MQWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTL 80 (439)
T ss_dssp -CCHHHHHHHBCCHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC
T ss_pred CCHHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCEEEEEC
T ss_conf 98578887658909999873798879999879858999999999985457899699994488764331056448289965
Q ss_pred --CHHHHHHHHHHCCC-----CCCCC-----CCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEH
Q ss_conf --88999999873157-----86551-----0088007986330004766058831657777787998610226999623
Q gi|254781054|r 54 --SSRNTENFCKIHHI-----PLHSP-----EDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121 (231)
Q Consensus 54 --tS~~t~~~a~~~gi-----~~~~l-----~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~ 121 (231)
.|...+.+..+-.+ ++... ...-.+|++|=.+-..|.++|+.=|...... .-++.+|+..|..+++
T Consensus 81 ~~~~~~~r~~~~~g~~~~~p~~~~~~~~~l~~~~~~iDVA~i~~s~~De~Gn~s~g~s~~~~--~a~~~~a~~VI~eVn~ 158 (439)
T 3d3u_A 81 NFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYT--KAAAECAPVVVAEVNK 158 (439)
T ss_dssp --------------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTTBCBTH--HHHHHHCSEEEEEEES
T ss_pred CCCCHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCHHHH--HHHHHHCCEEEEECCC
T ss_conf 77898999999779952126764479999981899974899995214678853046843668--9998628869984156
Q ss_pred HHCCCCC
Q ss_conf 0351345
Q gi|254781054|r 122 SKRVDFL 128 (231)
Q Consensus 122 sK~v~~L 128 (231)
.++..
T Consensus 159 --~~P~~ 163 (439)
T 3d3u_A 159 --QMPFI 163 (439)
T ss_dssp --SSCCC
T ss_pred --CCCCC
T ss_conf --66667
No 23
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=95.06 E-value=0.024 Score=34.08 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHH----HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEEC--------H----HHHHHHHHHC
Q ss_conf 78999999999998----3899789988-7917899999999998732870489618--------8----9999998731
Q gi|254781054|r 3 ALQMKRNAARRAIQ----YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPS--------S----RNTENFCKIH 65 (231)
Q Consensus 3 ~~~~K~~~a~~A~~----~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~t--------S----~~t~~~a~~~ 65 (231)
.+..++.+++.|++ .++++++||+ |-|+|+..+++.+..+.....++++||. + .-+..+|+.+
T Consensus 36 ~~~~~~~lg~~aA~~L~~~l~~~~~iGv~~WG~Tv~~~~~~l~~~~~~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~ 115 (264)
T 2r5f_A 36 EESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLL 115 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 68999999999999999865569879994465899999986277766668986996679998887657999999999970
Q ss_pred CCCCCCCCCCCEEEEEECCHHC
Q ss_conf 5786551008800798633000
Q gi|254781054|r 66 HIPLHSPEDVSSVDLSIDGFDE 87 (231)
Q Consensus 66 gi~~~~l~~~~~iDi~iDGaDe 87 (231)
|-+...+ ...+++|.+..
T Consensus 116 ~~~~~~l----~aP~~~~s~~~ 133 (264)
T 2r5f_A 116 NCPAFLL----PSQSIEQSVES 133 (264)
T ss_dssp TSCEECC----CCC--------
T ss_pred CCEEEEC----CCCHHCCCHHH
T ss_conf 9827820----57010068999
No 24
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein structure initiative; HET: COA; 2.40A {Shewanella oneidensis mr-1}
Probab=94.88 E-value=0.1 Score=30.08 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=56.0
Q ss_pred HHHHHHHCCCCCEEEECC-CHHHHHHHHHHHHHHHCCCEEEEEEC------------------------HHHHHHHHHHC
Q ss_conf 999998389978998879-17899999999998732870489618------------------------89999998731
Q gi|254781054|r 11 ARRAIQYVVDGMTLGMGT-GSTAKEFMILLADKIANGFRVQVIPS------------------------SRNTENFCKIH 65 (231)
Q Consensus 11 a~~A~~~v~~gmviGlGt-GSTv~~~i~~L~~~~~~~~~i~~v~t------------------------S~~t~~~a~~~ 65 (231)
|++|++.|+|||+|.+|. +.+-..++++|.++.++-.+++.+.. |...+....+-
T Consensus 9 a~eAv~~IkdG~tV~~~g~~g~P~~Ll~AL~~r~~~~~dlti~~~~~~g~~~~~~~~~~~~i~~~~~f~~~~~r~~i~~g 88 (436)
T 2oas_A 9 ALEAVSLIRSGETLWTHSMGATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTRPLLQSG 88 (436)
T ss_dssp HHHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSCCTTTHHHHHTT
T ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCHHHCCEEEECCCCCCHHHHHHHHCC
T ss_conf 99999609996999967987687999999997476259969999526664212266562979983487898999999779
Q ss_pred CCCCCC--CC--------CCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEH
Q ss_conf 578655--10--------088007986330004766058831657777787998610226999623
Q gi|254781054|r 66 HIPLHS--PE--------DVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121 (231)
Q Consensus 66 gi~~~~--l~--------~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~ 121 (231)
.+...+ +. ...++|++|=.+-..|.++|+-=|.... .-+-.+.++++.|+.+++
T Consensus 89 ~~~~~p~~~s~~~~~l~~~~~~iDVA~i~~s~~D~~Gn~s~g~s~~--~~~a~~~~a~~VI~eVn~ 152 (436)
T 2oas_A 89 DADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISVE--ATLAACQVAGKIIAHINP 152 (436)
T ss_dssp SSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECTTBCT--THHHHHHHCSEEEEEECT
T ss_pred CCCEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHH--HHHHHHHHCCEEEEEECC
T ss_conf 9742378424799999838999748999971378788325661167--789999718818998547
No 25
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=94.79 E-value=0.18 Score=28.54 Aligned_cols=131 Identities=18% Similarity=0.112 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHCCCCCEE-EECC-C-------HHHHHHHHHHHHHHHCCCEEEEEE--CH------HHHHHHHHHCCC
Q ss_conf 99999999999838997899-8879-1-------789999999999873287048961--88------999999873157
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTL-GMGT-G-------STAKEFMILLADKIANGFRVQVIP--SS------RNTENFCKIHHI 67 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmvi-GlGt-G-------STv~~~i~~L~~~~~~~~~i~~v~--tS------~~t~~~a~~~gi 67 (231)
+.-+.+++.+.++|++|++| -.+- | .|+...+.... +.+..+.++. |. .-|+..+.+.||
T Consensus 158 ~a~~~I~~~g~~lI~~g~~ILThcnSgtlat~~~GtAl~~i~~a~---~~g~~~~V~v~EtRP~~qG~rlta~~L~~~gi 234 (374)
T 2yvk_A 158 ETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAK---QKDLGLHIYACETRPVLQGSRLTAWELMQGGI 234 (374)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHH---HTTCCCEEEEECCTTTTHHHHTHHHHHHTTTC
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHH---CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999986304057899899864762565311100699999863---24554168742668744007899999864588
Q ss_pred CCCCCCCC--------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEE
Q ss_conf 86551008--------800798633000476605883165777778799861022699962303513455-788726787
Q gi|254781054|r 68 PLHSPEDV--------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEID 138 (231)
Q Consensus 68 ~~~~l~~~--------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~ 138 (231)
|+.-.-+. ..+|..+=|||-|..|+.++--=|-..+- -.-.....-|++++..+|+....- ...+|+|--
T Consensus 235 ~~tli~D~a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~~A-~~Ak~~~vP~~V~a~~~k~~~~~~~~~~i~iE~r 313 (374)
T 2yvk_A 235 DVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLA-ILANAFDIPFFVAAPLSTFDTKVKCGADIPIEER 313 (374)
T ss_dssp EEEEECGGGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBC
T ss_pred CEEEEECCHHHHHHHHCCCCEEEECCEEEECCCCEEECCCHHHHH-HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 728995144798876413202763120785488578743548999-9998729957998135765767788764435147
Q ss_pred E
Q ss_conf 2
Q gi|254781054|r 139 Q 139 (231)
Q Consensus 139 p 139 (231)
+
T Consensus 314 ~ 314 (374)
T 2yvk_A 314 D 314 (374)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 26
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum}
Probab=94.77 E-value=0.057 Score=31.71 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCC-HHHHHHHHHHHHHHHCCCEEEEEEC------------------------HHHHHH
Q ss_conf 999999999983899789988791-7899999999998732870489618------------------------899999
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTG-STAKEFMILLADKIANGFRVQVIPS------------------------SRNTEN 60 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtG-STv~~~i~~L~~~~~~~~~i~~v~t------------------------S~~t~~ 60 (231)
.|..-|++|+++|+||++|++|.+ .+-..++++|.++..+-.+++.+.. |...+.
T Consensus 9 ~Kivsa~eA~~~IkdGd~V~~~g~~g~P~~ll~aL~~r~~~~~~ltl~~~~~~g~~~~~~~~~~~~i~~~~~f~~~~~r~ 88 (448)
T 3gk7_A 9 DRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRG 88 (448)
T ss_dssp HTBCCHHHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGGGCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTTTHH
T ss_pred HCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCEEEECCCCCHHHHH
T ss_conf 74893999996299979999899868989999999985546788299984466763226767748599965778989999
Q ss_pred HHHHCCC---CC--CC----CC-CCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCC
Q ss_conf 9873157---86--55----10-088007986330004766058831657777787998610226999623035134
Q gi|254781054|r 61 FCKIHHI---PL--HS----PE-DVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDF 127 (231)
Q Consensus 61 ~a~~~gi---~~--~~----l~-~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~ 127 (231)
.+.+-.+ |. .. +. ....+|+++=.+-..|.++|+.=|..... .+-.+.++++.|+-|++ .++.
T Consensus 89 ~~~~g~~~~~p~~~~~~~~~l~~~~~~~DVa~i~~s~~D~~Gn~s~g~s~~~--~~a~~~~a~~VI~eVn~--~~p~ 161 (448)
T 3gk7_A 89 SIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDY--TMQAIKSAKIVLAEVND--QVPV 161 (448)
T ss_dssp HHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECCSBCBT--HHHHHHHCSEEEEEEET--TSCC
T ss_pred HHHCCCCEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHH--HHHHHHHCCEEEEEECC--CCCC
T ss_conf 9976995799984227899997289996399999355589996244664255--79998636869999705--6764
No 27
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=94.65 E-value=0.03 Score=33.45 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEE------------CHHHHHHHHHHCCCC
Q ss_conf 999999999998----3899789988791789999999999873287048961------------889999998731578
Q gi|254781054|r 5 QMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIP------------SSRNTENFCKIHHIP 68 (231)
Q Consensus 5 ~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~------------tS~~t~~~a~~~gi~ 68 (231)
+.++.+|+.|++ .++++++||+++|+|...+++.|....+ ..++.+|| ++.....++..++.+
T Consensus 37 ~~~~~l~~aaA~~L~~~l~~~~~igvswG~T~~~~~~~l~~~~~-~~~v~vv~l~G~~~~~~~~~~~~~~~~lA~~~~~~ 115 (255)
T 2okg_A 37 WVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSK-NRELLFVPARGGLGEDVKNQANTICAHMAEKASGT 115 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCTT-CCEEEEEESEEECC---CCHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999999986579988999567899999997300056-88717998058778887758899999999981996
Q ss_pred CCCC
Q ss_conf 6551
Q gi|254781054|r 69 LHSP 72 (231)
Q Consensus 69 ~~~l 72 (231)
...+
T Consensus 116 ~~~l 119 (255)
T 2okg_A 116 YRLL 119 (255)
T ss_dssp ECCC
T ss_pred EEEE
T ss_conf 3543
No 28
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=94.08 E-value=0.03 Score=33.45 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC------H--------HHHHHHHHHCC
Q ss_conf 999999999998----38997899887917899999999998732870489618------8--------99999987315
Q gi|254781054|r 5 QMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS------S--------RNTENFCKIHH 66 (231)
Q Consensus 5 ~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t------S--------~~t~~~a~~~g 66 (231)
+..+.+|+.|.+ .++++++||+|.|+|+..+++.|..+. ...++++||. + .-+...|+.+|
T Consensus 90 ~~~~~l~~~aa~~l~~~l~~~~~iGvswG~Tl~~~~~~l~~~~-~~~~v~~v~l~G~~~~~~~~~~~~~~~~~~~A~~~~ 168 (315)
T 2w48_A 90 EQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRS-QSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLK 168 (315)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHTTSCCCS-SCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 7999999999999996267999899825399999999700104-678818997057778876664588999999999847
Q ss_pred CCCCC
Q ss_conf 78655
Q gi|254781054|r 67 IPLHS 71 (231)
Q Consensus 67 i~~~~ 71 (231)
-+...
T Consensus 169 ~~~~~ 173 (315)
T 2w48_A 169 AESHL 173 (315)
T ss_dssp CEECC
T ss_pred CCCCC
T ss_conf 97546
No 29
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=93.75 E-value=0.03 Score=33.44 Aligned_cols=68 Identities=7% Similarity=0.021 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHH----HCCCC-CEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC------------HHHHHHHHHHCC
Q ss_conf 8999999999998----38997-899887917899999999998732870489618------------899999987315
Q gi|254781054|r 4 LQMKRNAARRAIQ----YVVDG-MTLGMGTGSTAKEFMILLADKIANGFRVQVIPS------------SRNTENFCKIHH 66 (231)
Q Consensus 4 ~~~K~~~a~~A~~----~v~~g-mviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t------------S~~t~~~a~~~g 66 (231)
++.++.+|+.|++ .+++| ++||++.|+|...+++.|........++++|+- ...+..+|..+|
T Consensus 121 ~~~~~~lg~aaA~~L~~~l~~gd~vIgvswG~Tl~~~~~~l~~~~~~~~~v~~v~~~g~~~~~~~~~~~~i~~~lA~~~~ 200 (345)
T 2o0m_A 121 KKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTG 200 (345)
T ss_dssp THHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 89999999999999998643699799993538999999973313688871899966776777777788899999999809
Q ss_pred CCCCC
Q ss_conf 78655
Q gi|254781054|r 67 IPLHS 71 (231)
Q Consensus 67 i~~~~ 71 (231)
-+...
T Consensus 201 ~~~~~ 205 (345)
T 2o0m_A 201 GNYRA 205 (345)
T ss_dssp CEECC
T ss_pred CCCEE
T ss_conf 96344
No 30
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Porphyromonas gingivalis}
Probab=91.91 E-value=0.12 Score=29.70 Aligned_cols=115 Identities=18% Similarity=0.285 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEECC--CH-HHHHHHHHHHHHHHC----C--CEEEEE-----------------------E
Q ss_conf 99999999998389978998879--17-899999999998732----8--704896-----------------------1
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGT--GS-TAKEFMILLADKIAN----G--FRVQVI-----------------------P 53 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGt--GS-Tv~~~i~~L~~~~~~----~--~~i~~v-----------------------~ 53 (231)
.|..-|.+|+++|+||++|.+|. |. +-..++++|++|..+ + ++++.+ +
T Consensus 3 ~Kiita~EA~~~IkdGd~V~~~Gf~~~g~P~~l~~AL~~r~~~~~~~g~~~~ltl~~~~~~g~~~~~~la~~~~~~~~~~ 82 (506)
T 2nvv_A 3 LRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTP 82 (506)
T ss_dssp CCBCCHHHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEES
T ss_pred CCEEEHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEC
T ss_conf 75334999997589979999868888657699999999999973667886248999734647754441124895599934
Q ss_pred --CHHHHHHHHHHCCCCCCCC--C---------CCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEE
Q ss_conf --8899999987315786551--0---------08800798633000476605883165777778799861022699962
Q gi|254781054|r 54 --SSRNTENFCKIHHIPLHSP--E---------DVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120 (231)
Q Consensus 54 --tS~~t~~~a~~~gi~~~~l--~---------~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D 120 (231)
++...+..+.+-.+...+. . ...++|+++--+-..|.++|+.=|...... ..++.+|++.|.-++
T Consensus 83 ~~~g~~~r~~i~~G~i~~~p~~~s~~~~~~r~~~~~~~DVali~~s~~D~~G~~s~g~s~~~~--~~~~~~A~~VI~evn 160 (506)
T 2nvv_A 83 YQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGIL--PTICRLADRIIVELN 160 (506)
T ss_dssp CCCCHHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECCSBCBTH--HHHHHHCSEEEEEEE
T ss_pred CCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEECCCCCCH--HHHHHHCCEEEEEEE
T ss_conf 888999999998599559875352699999844668984899997587889988334773307--999974999999954
Q ss_pred HH
Q ss_conf 30
Q gi|254781054|r 121 ES 122 (231)
Q Consensus 121 ~s 122 (231)
++
T Consensus 161 ~~ 162 (506)
T 2nvv_A 161 DK 162 (506)
T ss_dssp TT
T ss_pred CC
T ss_conf 57
No 31
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 1ooz_A 1ope_A 3dlx_A
Probab=89.73 E-value=0.26 Score=27.60 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=26.4
Q ss_pred HHHHHHHHCCCCCEEEECC---CHHHHHHHHHHHHHH
Q ss_conf 9999998389978998879---178999999999987
Q gi|254781054|r 10 AARRAIQYVVDGMTLGMGT---GSTAKEFMILLADKI 43 (231)
Q Consensus 10 ~a~~A~~~v~~gmviGlGt---GSTv~~~i~~L~~~~ 43 (231)
-|.+|+++|+|||+|++|+ ...-..++++|+++-
T Consensus 6 sa~EAa~~IkdGd~V~~sGf~~~g~P~al~~aLa~~~ 42 (481)
T 3k6m_A 6 DAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTG 42 (481)
T ss_dssp CHHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHHC
T ss_pred CHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 9999984299969999899777698899999999749
No 32
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=89.36 E-value=0.11 Score=29.98 Aligned_cols=43 Identities=23% Similarity=0.101 Sum_probs=30.4
Q ss_pred EEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEH
Q ss_conf 007986330004766058831657777787998610226999623
Q gi|254781054|r 77 SVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121 (231)
Q Consensus 77 ~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~ 121 (231)
++|++|==+...|.++|+.--| ....--..|.+|++.|+.|++
T Consensus 171 ~~DvAlIha~~AD~~GNv~~~g--~~~~~~~~A~Aa~~vIv~vE~ 213 (317)
T 1poi_A 171 QVDVAIIHAQQASPDGTVRIWG--GKFQDVDIAEAAKYTIVTCEE 213 (317)
T ss_dssp CCSEEEEEEEEECTTCCEECCS--CCTTHHHHHHHSSEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEC--CCCCCHHHHHCCCEEEEEEEE
T ss_conf 8868999855117997289966--776899998519919999999
No 33
>3cdk_B Succinyl-COA:3-ketoacid-coenzyme A transferase subunit B; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=87.80 E-value=0.036 Score=32.91 Aligned_cols=112 Identities=22% Similarity=0.305 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHH------HHHHHHHHCCCCC--------
Q ss_conf 89999999999983899789988791789999999999873287048961889------9999987315786--------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSR------NTENFCKIHHIPL-------- 69 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~------~t~~~a~~~gi~~-------- 69 (231)
.+.+++.|+.|+++|+||.++=+|.|.- .....+|. +..++...+-+- ........-+++.
T Consensus 5 ~d~~e~Ia~~~A~~i~DG~~v~lGiGlP-~~va~~l~----~~~~l~~~~E~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (219)
T 3cdk_B 5 KEARKRMVKRAVQEIKDGMNVNLGIGMP-TLVANEIP----DGVHVMLQSENGLLGIGPYPLEGTEDADLINAGKETITE 79 (219)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEECSSGG-GGGGTTCC----TTCCCEEEETTTEEEEECCCBTTTCCTTCBCTTSBBCEE
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHH-HHHHHHHH----CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 6899999999997678999999786789-99998750----378646886467356313651476577813475432311
Q ss_pred ------------CCCCCCCEEEEEECCHHCCCCCCEE---------EECCCHHHHHHHHHHHHHCCEEEEEEHHHC
Q ss_conf ------------5510088007986330004766058---------831657777787998610226999623035
Q gi|254781054|r 70 ------------HSPEDVSSVDLSIDGFDEIDSRLRL---------IKGYGGALLREKIIAHAASRFIVIGDESKR 124 (231)
Q Consensus 70 ------------~~l~~~~~iDi~iDGaDevd~~l~l---------IKGgGgAl~rEKiva~~a~~~I~i~D~sK~ 124 (231)
.+.-.-..+|++|=||=|||..+|+ +.|.||+.-- +..+++.+++...++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~dv~~lga~qID~~GnvNs~~ig~~~~~G~GG~~d~----~~~a~~~i~~~~~~~~ 151 (219)
T 3cdk_B 80 VTGASYFDSAESFAMIRGGHIDLAILGGMEVSEQGDLANWMIPGKMVKGMGGAMDL----VNGAKRIVVIMEHVNK 151 (219)
T ss_dssp EEEEEECCHHHHHHHHHTTCCCEEEECCSEEETTCCEECSCCTTC-CCBCTTHHHH----HHHSSEEEEECCSBCT
T ss_pred CCCCCCCCCCCCHHHHHCCCCCEEEECHHHCCCCCCEEEEECCCCCCCCCCCCCEE----EECCCEEEEEEEEECC
T ss_conf 56421114235588984898518983244518887640175177342687463202----2047758998446626
No 34
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP transferase; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium LT2} SCOP: c.124.1.2 c.124.1.2
Probab=86.67 E-value=1.7 Score=22.48 Aligned_cols=110 Identities=23% Similarity=0.324 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHC------CCCCEEEECCCHHHHHHHHHHHHHHHCCC-EEEE----EECH-------------------
Q ss_conf 9999999999838------99789988791789999999999873287-0489----6188-------------------
Q gi|254781054|r 6 MKRNAARRAIQYV------VDGMTLGMGTGSTAKEFMILLADKIANGF-RVQV----IPSS------------------- 55 (231)
Q Consensus 6 ~K~~~a~~A~~~v------~~gmviGlGtGSTv~~~i~~L~~~~~~~~-~i~~----v~tS------------------- 55 (231)
..++.|+.+++.| ++|..+=+|.|........+|.++...+. +..+ ++.+
T Consensus 249 ~~~~IA~~~A~lI~~~~~~~dG~tlQ~GiGgip~AV~~~L~~~~~~~~~~~~f~~Ggitd~~~~L~e~G~i~~~~~t~~f 328 (509)
T 1xr4_A 249 RELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQSF 328 (509)
T ss_dssp HHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHHTTSBSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEC
T ss_conf 99999999998742155357876421166617899999987505357456668847745467888767875563421545
Q ss_pred --HHHHHHHHHCC-C---------CCCCCCCCCEEEEEECCHHCCCCCCEE---------EECC-CHHHHHHHHHHHHHC
Q ss_conf --99999987315-7---------865510088007986330004766058---------8316-577777879986102
Q gi|254781054|r 56 --RNTENFCKIHH-I---------PLHSPEDVSSVDLSIDGFDEIDSRLRL---------IKGY-GGALLREKIIAHAAS 113 (231)
Q Consensus 56 --~~t~~~a~~~g-i---------~~~~l~~~~~iDi~iDGaDevd~~l~l---------IKGg-GgAl~rEKiva~~a~ 113 (231)
..-........ + +-.....++++|++|-||=|||.++|. +.|| ||..=- ++.|+
T Consensus 329 g~~~~~~~~~~~~~~~~~~~~y~N~~~~ia~~~~lDvaIlgAlEVDl~GnVNv~~~~~~~i~gG~GG~~Df----a~gA~ 404 (509)
T 1xr4_A 329 DGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDT----AAGAD 404 (509)
T ss_dssp SHHHHHHHHHCTTEEECCHHHHTCTTCSCCGGGGCSEEEECCSEECTTCCEECSBCTTSCBCSBCTTHHHH----HHHSS
T ss_pred CHHHHHHHHHCCCCEEECHHHHCCCHHHHHCCCCCCEEEEEEEEECCCCCEEEEEECCCCEECCCCCHHHH----HHCCC
T ss_conf 72989988748981787204303787776314885589870037536785778870797274797578999----71468
Q ss_pred CEEEEE
Q ss_conf 269996
Q gi|254781054|r 114 RFIVIG 119 (231)
Q Consensus 114 ~~I~i~ 119 (231)
.-|+..
T Consensus 405 ~sI~~~ 410 (509)
T 1xr4_A 405 LTIITA 410 (509)
T ss_dssp EEEEEC
T ss_pred CEEEEE
T ss_conf 546752
No 35
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein structure initiative; HET: CIT; 2.70A {Streptococcus mutans UA159}
Probab=86.66 E-value=1.7 Score=22.48 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHC------CCCCEEEECCCHHHHHHHHHHHHHHH-CCCEEEE----E-----------------EC--
Q ss_conf 99999999999838------99789988791789999999999873-2870489----6-----------------18--
Q gi|254781054|r 5 QMKRNAARRAIQYV------VDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQV----I-----------------PS-- 54 (231)
Q Consensus 5 ~~K~~~a~~A~~~v------~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i~~----v-----------------~t-- 54 (231)
...+..|+.|++.| ++|..+=+|.|+........|.++.+ .+.+... + ++
T Consensus 251 p~~~~IAr~aA~~I~~~~~~~dG~tlQ~GiG~ip~AV~~~L~~~~~~~gI~~~~~~ggitd~~vdLie~G~v~~~~~~~~ 330 (519)
T 2hj0_A 251 PKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQMIKDDIKANFALGGITNAMVELLEEGLVDKILDVQD 330 (519)
T ss_dssp HHHHHHHHHHHHHHHTSTTCSTTCEEECCSSHHHHHHHHHHHHHHHHSCCCEEEECSEECHHHHHHHHTTSEEEEEESEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 59999999999987507845677401345421589999999875541485367751663437888986685112103431
Q ss_pred -HHHHHHHHHHCCCCCCC------------CCCCCEEEEEECCHHCCCCCCEE--EE--------CCCHHHHHHHHHHHH
Q ss_conf -89999998731578655------------10088007986330004766058--83--------165777778799861
Q gi|254781054|r 55 -SRNTENFCKIHHIPLHS------------PEDVSSVDLSIDGFDEIDSRLRL--IK--------GYGGALLREKIIAHA 111 (231)
Q Consensus 55 -S~~t~~~a~~~gi~~~~------------l~~~~~iDi~iDGaDevd~~l~l--IK--------GgGgAl~rEKiva~~ 111 (231)
...+........-+... ...+.++|++|-||=|||-++|. .+ |-||..=. +..
T Consensus 331 F~~gs~~s~~~n~~~~ve~~~~~y~n~~~~g~~~~~LdvaIl~AlEVDl~GnVNv~t~s~G~i~~G~GG~~Df----a~g 406 (519)
T 2hj0_A 331 FDHPSAVSLDRNAEKHYEIDANMYASPLSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHCDT----AFA 406 (519)
T ss_dssp SSHHHHHHHHHTTTTEEECCHHHHHCSSSSCCGGGGCSEEEECCSEECTTCCEECSBCTTCCBCCBCTTHHHH----HHH
T ss_pred CCCCHHHHHHHCCCCCEEECHHHCCCCCCCHHHHCCCCEEEEEEEEEEECCCEEEEECCCCCEECCCCCHHHH----HHC
T ss_conf 1432278886168871797356605865320332665658863047630683478970588675266737888----742
Q ss_pred HCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEE------EEC-
Q ss_conf 0226999623035134557887267872575899999986322148985037722588636257888899------820-
Q gi|254781054|r 112 ASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIV------DAF- 184 (231)
Q Consensus 112 a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~Il------D~~- 184 (231)
|+.-|+..-.++ |+ +|.=| |.. ......+.. -..++|+.| |- |+.
T Consensus 407 AklsIi~~pst~-----gr--is~IV-~~v-----------------t~VtTpg~~-Vd~VVTE~G--IAvnp~r~dl~e 458 (519)
T 2hj0_A 407 AKMSLVISPLVR-----GR--IPTFV-DKV-----------------NTVITPGTS-VDVVVTEVG--IAINPNRPDLIE 458 (519)
T ss_dssp SSEEEEECCSEE-----TT--EESBC-SSC-----------------SSCSBCGGG-CCEEECSSC--EEECTTCHHHHH
T ss_pred CCCEEEEECCCC-----CC--CCEEE-CCC-----------------CCEEECCCC-CCEEECCCE--EEECCCCHHHHH
T ss_conf 584899974458-----99--88680-688-----------------866615761-068987463--874666606999
Q ss_pred -C----CCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEE
Q ss_conf -7----986898999999627996866480247677899977998499
Q gi|254781054|r 185 -F----GFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECL 227 (231)
Q Consensus 185 -~----~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~ 227 (231)
+ .+..+.++|..+...+.|+-.---|.+.. ..++-+.||++.
T Consensus 459 ~~~~~~~p~~~i~~L~~~a~~l~~~~~p~~~~d~~-va~ve~Rdg~~~ 505 (519)
T 2hj0_A 459 YFKDLKVPQLTIEELKEKAYAIVGNPQPIQYGDKI-VALIEYRDGSLI 505 (519)
T ss_dssp HTTTCSSCEECHHHHHHHHHHHHCSCCCCCEEEEE-EEEEECTTSSEE
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCE-EEEEEECCCCEE
T ss_conf 99856998332899999999984789998845423-688884377424
No 36
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=83.97 E-value=0.29 Score=27.29 Aligned_cols=118 Identities=13% Similarity=0.087 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCH-HHHHHHHHHHHHHHCCCEEEEEEC-H-----------------------HHHHH
Q ss_conf 9999999999838997899887917-899999999998732870489618-8-----------------------99999
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGS-TAKEFMILLADKIANGFRVQVIPS-S-----------------------RNTEN 60 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGS-Tv~~~i~~L~~~~~~~~~i~~v~t-S-----------------------~~t~~ 60 (231)
.|..-|++|+++|+|||+|.++++. +-..++++|.++-..-.+++.+.. + ...+.
T Consensus 13 ~Kv~sa~eA~~~IkdG~~V~~~g~~g~P~~ll~AL~~r~~~~~dltl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 92 (434)
T 3eh7_A 13 SRIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNSRK 92 (434)
T ss_dssp GGEECHHHHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTTTC--CEEECCBCTTCC------------------------
T ss_pred HCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCEEEECCCCCHHHHH
T ss_conf 75891999996199949999799877979999999974516689679987256564115744448199954888989999
Q ss_pred HHHHCCCCCCC--CC--------CCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCC
Q ss_conf 98731578655--10--------088007986330004766058831657777787998610226999623035134
Q gi|254781054|r 61 FCKIHHIPLHS--PE--------DVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDF 127 (231)
Q Consensus 61 ~a~~~gi~~~~--l~--------~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~ 127 (231)
+..+-.+...+ +. ..-.+|+++=.+-..|.++|+-=|.... .-+-.+..+++.|+-|++ .++.
T Consensus 93 ~i~~g~i~~~p~~~~~~~~~l~~~~~~iDVali~~s~aDe~Gn~s~~~s~~--~a~a~~~~a~~VI~qVn~--~~p~ 165 (434)
T 3eh7_A 93 AVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCD--YSKPAAESAHLVIGEINR--QMPY 165 (434)
T ss_dssp -----CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEECTTBCT--THHHHHHHCSEEEEEEET--TSCC
T ss_pred HHHCCCCCEECCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCEECCCCHH--HHHHHHHHCCEEEEECCC--CCCC
T ss_conf 997799723536412689999707998868999962368899662146525--579999738818986057--6765
No 37
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=83.04 E-value=0.43 Score=26.21 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEECC---CHHHHHHHHHHHHHHHCC-CEEEEEEC-H------------------------H
Q ss_conf 99999999998389978998879---178999999999987328-70489618-8------------------------9
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGT---GSTAKEFMILLADKIANG-FRVQVIPS-S------------------------R 56 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGt---GSTv~~~i~~L~~~~~~~-~~i~~v~t-S------------------------~ 56 (231)
.|..-|++|+++|+||++|.+|. .++-..++++|+++.++. ++++.+.. | -
T Consensus 13 ~Kv~sa~eAv~~IkdG~tV~~~gf~~~g~P~~l~~aL~~r~~~~~~~lt~~~~~~~g~~~~~~~~~~g~~~r~~~~~~gp 92 (497)
T 2g39_A 13 DKVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDS 92 (497)
T ss_dssp GGBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCH
T ss_pred HCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCH
T ss_conf 27780999996299969999899888768799999999999747986799982257886445200279878998557899
Q ss_pred HHHHHHHHCCCCCCCC--C---------CCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHH
Q ss_conf 9999987315786551--0---------0880079863300047660588316577777879986102269996230
Q gi|254781054|r 57 NTENFCKIHHIPLHSP--E---------DVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDES 122 (231)
Q Consensus 57 ~t~~~a~~~gi~~~~l--~---------~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~s 122 (231)
..+.+..+-.+...+. . ....+|+++=-+-..|.++|+-=|...... .-.+..+++.|.-+...
T Consensus 93 ~~r~~i~~G~i~~~p~~~s~~~~~~r~~~~~~~DVali~~s~~D~~G~~sl~~s~~~~--~a~~~~a~~viaevn~~ 167 (497)
T 2g39_A 93 TLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTTSVGNS--ASFAIFAKQVIVEINLA 167 (497)
T ss_dssp HHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCSBCBTH--HHHHHHSSEEEEEEETT
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECCCCCCH--HHHHHHCCEEEEEECCC
T ss_conf 9999997698079844460799999952889998999998746779728652787648--99985057078874157
No 38
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=75.62 E-value=2.3 Score=21.70 Aligned_cols=90 Identities=21% Similarity=0.159 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCH----------------HCCC---CCC
Q ss_conf 999999999987328704896188999999873157865510088007986330----------------0047---660
Q gi|254781054|r 32 AKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGF----------------DEID---SRL 92 (231)
Q Consensus 32 v~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGa----------------Devd---~~l 92 (231)
...|.+.|.+ .| +.+++|+ -|+..+++.|||+.+.+++....=-.||- |.+| =||
T Consensus 26 l~~~a~~L~~---~g--~eiisTG-GTa~~l~~~gi~v~~Vs~~TgfpEil~GRVKTLHP~IhggiL~~~~~iDlVvvNL 99 (464)
T 1zcz_A 26 YLDILRELHE---KG--WEIWASS-GTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGILGPEPRWDVVFVDL 99 (464)
T ss_dssp GHHHHHHHHH---TT--CEEEECH-HHHHHHHHTTCCCEEGGGGSCCCCGGGGTTTTCCHHHHHHHHSSSCSCSEEEECC
T ss_pred HHHHHHHHHH---CC--CEEEECC-HHHHHHHHCCCCEEEHHHCCCCCHHHCCCCCCCCCHHHHHHCCCCCCCCEEEECC
T ss_conf 8999999998---89--8999872-6899999779966888861497177488325478055376517888878799817
Q ss_pred ---EEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC
Q ss_conf ---5883165777778799861022699962303513455
Q gi|254781054|r 93 ---RLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG 129 (231)
Q Consensus 93 ---~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg 129 (231)
--|-=||-+|+| --|.+-+...+++|..-+-..++
T Consensus 100 YPfEnIDIGGpsmiR--AAAKN~~~Vtvi~dp~~y~~~~~ 137 (464)
T 1zcz_A 100 YPPPDIDIGGVALLR--AAAKNWKKVKPAFDMETLKLAIE 137 (464)
T ss_dssp CCTTCCCSHHHHHHH--HHHHTTTTCEEECSHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHH--HHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 884247977289999--99873757434676999999885
No 39
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=74.98 E-value=2.9 Score=21.13 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCCCEEEECCCH---HHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999999838997899887917---89999999999873287048961
Q gi|254781054|r 10 AARRAIQYVVDGMTLGMGTGS---TAKEFMILLADKIANGFRVQVIP 53 (231)
Q Consensus 10 ~a~~A~~~v~~gmviGlGtGS---Tv~~~i~~L~~~~~~~~~i~~v~ 53 (231)
.+++|+++|+||++|.+|.-. +-..++.+|.++-.. +++.+.
T Consensus 10 s~~eA~~~I~DG~tiaigGf~~~~~P~ali~eL~rq~~k--dLtli~ 54 (241)
T 3cdk_A 10 SSKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQGVK--DLTVVS 54 (241)
T ss_dssp CHHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHHTCC--SEEEEE
T ss_pred CHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCC--CCEEEE
T ss_conf 999998439997999997824513599999999985899--864650
No 40
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism, hydrolase; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=74.96 E-value=2.7 Score=21.25 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHCCCC-CEEEECCCHHHHHHHHHHHHHH
Q ss_conf 87899999999999838997-8998879178999999999987
Q gi|254781054|r 2 DALQMKRNAARRAIQYVVDG-MTLGMGTGSTAKEFMILLADKI 43 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~~g-mviGlGtGSTv~~~i~~L~~~~ 43 (231)
|.+++-+.|++.-.+.++.| -+|||-+|||...+.++|.+..
T Consensus 9 ~~~e~~~~a~~~~~~~i~~~~~~l~LsgG~tp~~~y~~L~~~~ 51 (234)
T 2ri0_A 9 NKTEGSKVAFRMLEEEITFGAKTLGLATGSTPLELYKEIRESH 51 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEECCSSTTHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999975998799799725999999999847
No 41
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative, eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=74.70 E-value=4.6 Score=19.85 Aligned_cols=106 Identities=21% Similarity=0.107 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEC-H-------HHHHHHHHHCCCCCCCCCCC--------CEEEEEECCHHCCCC
Q ss_conf 7917899999999998732870489618-8-------99999987315786551008--------800798633000476
Q gi|254781054|r 27 GTGSTAKEFMILLADKIANGFRVQVIPS-S-------RNTENFCKIHHIPLHSPEDV--------SSVDLSIDGFDEIDS 90 (231)
Q Consensus 27 GtGSTv~~~i~~L~~~~~~~~~i~~v~t-S-------~~t~~~a~~~gi~~~~l~~~--------~~iDi~iDGaDevd~ 90 (231)
|.| |+...+....+ .|.+++++.+ | .-|+..+.+.|||+.-.-+. .++|..|=|||-|-.
T Consensus 194 ~~g-tal~~i~~a~~---~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~d~a~~~~m~~~~vd~V~vGAd~i~~ 269 (383)
T 2a0u_A 194 RYG-TALGVVRQLFY---DGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQ 269 (383)
T ss_dssp SSC-SHHHHHHHHHH---TTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECT
T ss_pred CHH-HHHHHHHHHHH---CCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCEEEEECCEEEC
T ss_conf 205-67999999997---79973699736796345747899999863777689981678999751666658860327865
Q ss_pred CCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCC-CCCCCEEEE
Q ss_conf 6058831657777787998-61022699962303513455-788726787
Q gi|254781054|r 91 RLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLG-RGMLPIEID 138 (231)
Q Consensus 91 ~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~ 138 (231)
|+..+--=|-..+= ++| ....-|++.+..+|+....- ...+|+|--
T Consensus 270 nG~v~nkiGT~~~A--~~Ak~~~vP~~v~a~~~k~~~~~~~~~~i~iE~r 317 (383)
T 2a0u_A 270 NGDTANKIGTYNLA--VSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEER 317 (383)
T ss_dssp TCCEEEETTHHHHH--HHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBC
T ss_pred CCCEEECCCCHHHH--HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 89778656858999--9987459987993566642767799775546568
No 42
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=71.65 E-value=5.3 Score=19.44 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=56.0
Q ss_pred CCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHH
Q ss_conf 22699962303513455788726787257589999998632214898503772258863625788889982079868989
Q gi|254781054|r 113 SRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192 (231)
Q Consensus 113 ~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~ 192 (231)
+.|-.++|..|+-... ...+=+.+-|.....+.+.+.+ .++++... .+|...|+++.+++.+..+..
T Consensus 52 ~~~~~~vd~~~lg~~~-~~~v~~~~~~~~~~~~~~~l~~-------~p~V~~~~-----~~tG~~dl~~~v~~~~~~~l~ 118 (151)
T 2cyy_A 52 KKFTAIIDPEALGYSM-LAFILVKVKAGKYSEVASNLAK-------YPEIVEVY-----ETTGDYDMVVKIRTKNSEELN 118 (151)
T ss_dssp CCCCCCCCGGGGTCCE-EEEEEEEECTTCHHHHHHHHHT-------CTTEEEEE-----ECSSSSSEEEEEEESSHHHHH
T ss_pred CEEEEEECHHHHCCCC-EEEEEEEECCCCHHHHHHHHHC-------CCCEEEEE-----EEECCCCEEEEEEECCHHHHH
T ss_conf 0037998899978985-6999999635405899999976-------99930999-----820688789999989999999
Q ss_pred HHHHHHHCCCCEEECCEEC
Q ss_conf 9999962799686648024
Q gi|254781054|r 193 IISGELCNIPGVIEHGLFI 211 (231)
Q Consensus 193 ~le~~L~~IpGVVe~GlF~ 211 (231)
.+-.+|..+|||..+=-|.
T Consensus 119 ~~~~~l~~~~gv~~~~t~~ 137 (151)
T 2cyy_A 119 NFLDLIGSIPGVEGTHTMI 137 (151)
T ss_dssp HHHHHHHTSTTEEEEEEEE
T ss_pred HHHHHHHCCCCEEEEEEEE
T ss_conf 9999984599975999999
No 43
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=69.44 E-value=6.1 Score=19.10 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHHHHHCCCCCCCCCCC------C----EEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCC
Q ss_conf 999987315786551008------8----007986330004766058831657777787998610226999623035134
Q gi|254781054|r 58 TENFCKIHHIPLHSPEDV------S----SVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDF 127 (231)
Q Consensus 58 t~~~a~~~gi~~~~l~~~------~----~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~ 127 (231)
|+..+.+.||++.-+.+. . .+|..+=|||-|..|+.++---|-..+= -.-.+.+.-+++++...|+.+.
T Consensus 22 tA~~L~~~GI~vtli~Dsav~~~m~~~~~~Vd~VlvGAd~v~~nG~v~nk~GT~~iA-l~Ak~~~vPv~V~~~s~K~~~~ 100 (191)
T 1w2w_B 22 TAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLA-VICKQFGIKFFVVAPKTTIDNV 100 (191)
T ss_dssp HHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHH-HHHHHHTCEEEEECCGGGBCSS
T ss_pred HHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCEEEECCCEEECCCCEEEHHHHHHHH-HHHHHHCCCEEEEEEEEEECCC
T ss_conf 999999869987999533899999856877888998810875489887556489999-9999878997998421034300
Q ss_pred CC-CCCCCEEEE
Q ss_conf 55-788726787
Q gi|254781054|r 128 LG-RGMLPIEID 138 (231)
Q Consensus 128 Lg-~~plPVEV~ 138 (231)
.. ....++|--
T Consensus 101 ~~~~~~~~~e~~ 112 (191)
T 1w2w_B 101 TETGDDIIVEER 112 (191)
T ss_dssp CCSGGGCCCCBC
T ss_pred CCCCCCCCCCCC
T ss_conf 136763233568
No 44
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii OT3} PDB: 2z4p_A 2e1a_A
Probab=65.56 E-value=7.2 Score=18.62 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=47.0
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHH-HHHHHCCCCEEECC
Q ss_conf 72678725758999999863221489850377225886362578888998207986898999-99962799686648
Q gi|254781054|r 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQII-SGELCNIPGVIEHG 208 (231)
Q Consensus 133 lPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~l-e~~L~~IpGVVe~G 208 (231)
+=|++.|-.+..+.++++++ |+++.. ..+|-..++++-+...+..+..++ ..+|.++|||..+-
T Consensus 6 i~I~~~~~~~~~v~~~l~~~-------peV~~v-----~~vtG~~Dli~~v~~~d~~~l~~~v~~~l~~~~gV~~t~ 70 (83)
T 2cvi_A 6 ILMVTAAGKEREVMEKLLAM-------PEVKEA-----YVVYGEYDLIVKVETDTLKDLDQFITEKIRKMPEIQMTS 70 (83)
T ss_dssp EEEEECTTCHHHHHHHHHTS-------TTEEEE-----EECBSSCSEEEEEEESSHHHHHHHHHTTGGGCTTEEEEE
T ss_pred EEEEECCCCHHHHHHHHHCC-------CCEEEE-----EEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99997789999999999779-------997999-----992389889999998999999999999863599983799
No 45
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=64.33 E-value=7.6 Score=18.47 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=36.6
Q ss_pred HCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC
Q ss_conf 3899789-9887917899999999998732870489618899999987315786
Q gi|254781054|r 17 YVVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPL 69 (231)
Q Consensus 17 ~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~ 69 (231)
.++++.+ +=.|+|++...+++.+... .+.++.++.+|.....+++++|...
T Consensus 168 ~~~~g~~vli~Gag~vG~~a~~~~~~~--g~~~Vi~~~~~~~k~~~~~~~Ga~~ 219 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAV--SAARVIAVDLDDDRLALAREVGADA 219 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHH--CCCEEEEEESCHHHHHHHHHTTCSE
T ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHCCCEE
T ss_conf 568870689998884577799999982--8997999978889989998659838
No 46
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B*
Probab=63.11 E-value=8 Score=18.33 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=27.2
Q ss_pred HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf 3899789---988791789999999999873287048961889999998
Q gi|254781054|r 17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC 62 (231)
Q Consensus 17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a 62 (231)
.+++||. +|-|||+|+.++-+.++ .+-.+.+|--|......|
T Consensus 73 ~lkpG~~VLdLG~G~G~~~~~la~~Vg----~~G~V~aVD~s~~~l~~a 117 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIE----LNGKAYGVEFSPRVVREL 117 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHT----TTSEEEEEECCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHC----CCCEEEEEECCHHHHHHH
T ss_conf 889999999967718899999999715----687699997999999999
No 47
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, open form, form J, domain movement, cyclase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=62.44 E-value=8.3 Score=18.26 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf 99789988791789999999999873287048961889999998
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC 62 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a 62 (231)
++..+||+|+|++.... ...|...+.|.....|||+.-+..-+
T Consensus 105 r~d~iIaiGGG~v~D~a-k~~A~~y~rgi~~i~vPTtlla~~Da 147 (393)
T 1sg6_A 105 RDTVVIALGGGVIGDLT-GFVASTYMRGVRYVQVPTTLLAMVDS 147 (393)
T ss_dssp TTCEEEEEESHHHHHHH-HHHHHHGGGCCEEEEEECSHHHHHTT
T ss_pred CCCEEEEECCCCHHHHH-HHHHHHHHCCCCEEEECCCHHCCCCC
T ss_conf 87669995585032456-77777762687435421420024565
No 48
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=61.52 E-value=8.6 Score=18.15 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=27.8
Q ss_pred HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf 3899789---988791789999999999873287048961889999998
Q gi|254781054|r 17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC 62 (231)
Q Consensus 17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a 62 (231)
.+++|+. +|-|||+|+.++.+.++ .+-.+.+|-.|...-..|
T Consensus 74 ~lkpG~~VLDlG~G~G~~~~~la~~vg----~~G~V~aVD~s~~~l~~a 118 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIVG----PDGLVYAVEFSHRSGRDL 118 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHC----TTCEEEEECCCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHC----CCCEEEEEECCHHHHHHH
T ss_conf 999999999965768989999999859----996799997999999999
No 49
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor}
Probab=60.36 E-value=7.7 Score=18.47 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC
Q ss_conf 899789-9887917899999999998732870489618899999987315786
Q gi|254781054|r 18 VVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPL 69 (231)
Q Consensus 18 v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~ 69 (231)
++++.. +-.|.++.+-.+.-.+++. .|..+.++.+|......++++|-..
T Consensus 226 ~~~g~~VlV~Ga~G~vGl~aiqlak~--~G~~vi~~~~s~~~~~~~~~lGA~~ 276 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALA--GGANPICVVSSPQKAEICRAMGAEA 276 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHTCCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHCCCCE
T ss_conf 89987799967887899999999997--5991579957889999999759979
No 50
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=58.06 E-value=9.9 Score=17.78 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=51.4
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEEC
Q ss_conf 87267872575899999986322148985037722588636257888899820798689899999962799686648024
Q gi|254781054|r 132 MLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFI 211 (231)
Q Consensus 132 plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~ 211 (231)
.+-|.+.|.....+.++|..+. ..++... -+|+|-+|+=+.-....+..+.-..|+.+|||+...+-.
T Consensus 9 SlVV~~~Pe~~~~V~~~l~~~~-----g~EIh~~-------d~~~GKiVVtiE~~~~~~~~~~i~~I~~l~GVlsa~lVY 76 (95)
T 2jsx_A 9 SLVVQAKSERISDISTQLNAFP-----GCEVAVS-------DAPSGQLIVVVEAEDSETLIQTIESVRNVEGVLAVSLVY 76 (95)
T ss_dssp EEEEEECTTSHHHHHHHHTTST-----TEEEEEE-------ETTTTEEEEEEEESSHHHHHHHHHHHTTSTTEEEEEESS
T ss_pred EEEEEECHHHHHHHHHHHHCCC-----CCEEEEE-------CCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 8999978788999999997599-----9789620-------388970999997398679999999987699832786778
Q ss_pred CCC
Q ss_conf 767
Q gi|254781054|r 212 NMV 214 (231)
Q Consensus 212 ~~~ 214 (231)
...
T Consensus 77 ~~~ 79 (95)
T 2jsx_A 77 HQQ 79 (95)
T ss_dssp CCC
T ss_pred EEE
T ss_conf 871
No 51
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14
Probab=57.78 E-value=10 Score=17.75 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHCCCCCE---EEECCCHHHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHH
Q ss_conf 999999999983899789---988791789999999999873-28704896188999999873
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMT---LGMGTGSTAKEFMILLADKIA-NGFRVQVIPSSRNTENFCKI 64 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmv---iGlGtGSTv~~~i~~L~~~~~-~~~~i~~v~tS~~t~~~a~~ 64 (231)
+-+.+...+..++++++. ||-|||+....+. +... .+.++.++-.|..--..|++
T Consensus 44 ~~~~i~~~~~~~~~~~~~vLDlGcGtG~~~~~l~----~~~~~~~~~v~giD~S~~ml~~A~~ 102 (244)
T 1im8_A 44 IITAIGMLAERFVTADSNVYDLGCSRGAATLSAR----RNINQPNVKIIGIDNSQPMVERCRQ 102 (244)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHH----HTCCCSSCEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH----HHCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 9999999999867997989992002228899988----6336998089997697899999986
No 52
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=57.50 E-value=7.6 Score=18.50 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCC-EEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCC
Q ss_conf 99999986322148985037722588636257888-899820798689899999962799686648024767
Q gi|254781054|r 144 KTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGN-YIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMV 214 (231)
Q Consensus 144 ~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN-~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~ 214 (231)
...+...+.+..+|++.--|.- ++++++|+ |+++ +|.+||--.+++|..++
T Consensus 282 ~i~~~A~~a~~~Lg~~g~aRiD-----f~ld~~g~~y~lE---------------vNt~PGlt~~S~~p~~a 333 (377)
T 1ehi_A 282 EVKQMALDAYKVLNLRGEARMD-----FLLDENNVPYLGE---------------PNTLPGFTNMSLFKRLW 333 (377)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE-----EEECTTCCEEEEE---------------EESSCCCSTTCGGGTGG
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-----EEEECCCCEEEEE---------------ECCCCCCCCCCHHHHHH
T ss_conf 9999999999996999469999-----9996899789998---------------55999988403899999
No 53
>2zbc_A 83AA long hypothetical transcriptional regulator ASNC; SARD; 1.90A {Sulfolobus tokodaii str}
Probab=56.34 E-value=11 Score=17.61 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=46.0
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHH-HHHHHCCCCEEECCEE
Q ss_conf 72678725758999999863221489850377225886362578888998207986898999-9996279968664802
Q gi|254781054|r 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQII-SGELCNIPGVIEHGLF 210 (231)
Q Consensus 133 lPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~l-e~~L~~IpGVVe~GlF 210 (231)
+=|.+.|.....+.+.|.+ .|+++... .+|-+.++++-+...+..+...+ ...|..+|||.++--+
T Consensus 6 V~i~~~~~~~~~v~~~l~~-------~peV~~~~-----~vtG~~D~~~~v~~~d~~~l~~~v~~~l~~~~gV~~t~T~ 72 (83)
T 2zbc_A 6 VLINTDAGGEDEVFERLKS-------MSEVTEVH-----VVYGVYDIVVKVEADSMDKLKDFVTNTIRKLPKVRSTLTM 72 (83)
T ss_dssp EEEEESTTCHHHHHHHHTT-------CTTEEEEE-----ECSSSCSEEEEEECSSHHHHHHHHHHTGGGSTTEEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHC-------CCCEEEEE-----ECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9999778999999999976-------94734889-----8118998999999999999999999986069899279999
No 54
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NAD; 2.05A {Pyrococcus horikoshii OT3} PDB: 2dfv_A* 3gfb_A*
Probab=55.31 E-value=11 Score=17.50 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=41.1
Q ss_pred HHCCCC-CEEEECCCHHHHHHHHHHHHHHHCC-CEEEEEECHHHHHHHHHHCCCCC-CCCCC------------CCEEEE
Q ss_conf 838997-8998879178999999999987328-70489618899999987315786-55100------------880079
Q gi|254781054|r 16 QYVVDG-MTLGMGTGSTAKEFMILLADKIANG-FRVQVIPSSRNTENFCKIHHIPL-HSPED------------VSSVDL 80 (231)
Q Consensus 16 ~~v~~g-mviGlGtGSTv~~~i~~L~~~~~~~-~~i~~v~tS~~t~~~a~~~gi~~-~~l~~------------~~~iDi 80 (231)
...++| .++=.|+|+.-.++++.+.. .+ ..+.++.+|..-...++++|... ++..+ -...|+
T Consensus 163 ~~~~~g~~vlV~GaG~vG~~a~qla~~---~g~~~v~~~~~~~~~~~~~~~lGa~~vv~~~~~~~~~~~~~~~~~~g~d~ 239 (348)
T 2d8a_A 163 AGPISGKSVLITGAGPLGLLGIAVAKA---SGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDV 239 (348)
T ss_dssp TSCCTTCCEEEECCSHHHHHHHHHHHH---TTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCCEE
T ss_conf 256895989998979999999999998---59987999969999999999709989988999899999999838998539
Q ss_pred EECCH
Q ss_conf 86330
Q gi|254781054|r 81 SIDGF 85 (231)
Q Consensus 81 ~iDGa 85 (231)
.||-.
T Consensus 240 v~D~~ 244 (348)
T 2d8a_A 240 FLEFS 244 (348)
T ss_dssp EEECS
T ss_pred EEECC
T ss_conf 99999
No 55
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=53.80 E-value=12 Score=17.35 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 87899999999999838--99789988791789999999999873
Q gi|254781054|r 2 DALQMKRNAARRAIQYV--VDGMTLGMGTGSTAKEFMILLADKIA 44 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v--~~gmviGlGtGSTv~~~i~~L~~~~~ 44 (231)
|.+++=+.+|+.-.+.| ++.-+|+|-+|||-..+.+.|++..+
T Consensus 8 ~~~e~~~~~a~~i~~~i~~~~~~~i~lsgG~tP~~~y~~L~~~~~ 52 (242)
T 2bkx_A 8 TYEELSQIAARITADTIKEKPDAVLGLATGGTPEGTYRQLIRLHQ 52 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTCEEEECCSSTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 999999999999999999788989997985409999999998762
No 56
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=53.60 E-value=3.3 Score=20.72 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECC
Q ss_conf 999999863221489850377225886362578888998207
Q gi|254781054|r 144 KTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFF 185 (231)
Q Consensus 144 ~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~ 185 (231)
...+...+.+..+|++.-.|.- .+++++|.|++++..
T Consensus 297 ~i~~~A~~a~~aLg~~g~~RvD-----f~~~~~~~yvlEvNt 333 (373)
T 3lwb_A 297 AIRQLAIRAFAAIDCRGLARVD-----FFLTDDGPVINEINT 333 (373)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-----EEEETTEEEEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-----EEEECCEEEEEEECC
T ss_conf 9999999999996994089899-----999999079998719
No 57
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME disease, non-hodgkin lymphomas; 2.20A {Borrelia burgdorferi B31}
Probab=52.40 E-value=12 Score=17.21 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHCC------CC-CEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 878999999999998389------97-899887917899999999998732
Q gi|254781054|r 2 DALQMKRNAARRAIQYVV------DG-MTLGMGTGSTAKEFMILLADKIAN 45 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~------~g-mviGlGtGSTv~~~i~~L~~~~~~ 45 (231)
|.+++=+.+|+.-++.|. +. -+|||-+|||...+.+.|++..+.
T Consensus 29 ~~~el~~~aA~~i~~~I~~~~~~~~~~~~iaLsgG~TP~~~y~~L~~~~~~ 79 (289)
T 3hn6_A 29 TYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKN 79 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999999999877503898599979984899999999988752
No 58
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=50.85 E-value=13 Score=17.06 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHCCCCEEECCEECCCCCE
Q ss_conf 68989999996279968664802476778
Q gi|254781054|r 188 IPDPQIISGELCNIPGVIEHGLFINMVDC 216 (231)
Q Consensus 188 i~dp~~le~~L~~IpGVVe~GlF~~~~d~ 216 (231)
+..|+.++.-.+..|+|- +|+...|.
T Consensus 170 ias~~Gi~~l~~~~P~v~---I~ta~iD~ 195 (216)
T 1xtt_A 170 ISSEYGVNKILSKYPFIY---LFTVAIDP 195 (216)
T ss_dssp EEEHHHHHHHHHHCTTSE---EEESEEES
T ss_pred EECHHHHHHHHHHCCCCE---EEEEEECC
T ss_conf 946999999998795978---99999577
No 59
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=50.66 E-value=13 Score=17.04 Aligned_cols=50 Identities=14% Similarity=0.002 Sum_probs=32.6
Q ss_pred HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf 3899789988-791789999999999873287048961889999998731578
Q gi|254781054|r 17 YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231)
Q Consensus 17 ~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231)
-+++|..|=+ |.++.+..+.-.+++. .|..+.++..|.....+++++|..
T Consensus 137 ~~~~g~~VlV~ga~g~vG~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~Ga~ 187 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKA--LGAKLIGTVSSPEKAAHAKALGAW 187 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 979999999989950999999999998--699899997985789999974998
No 60
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=49.70 E-value=13 Score=16.95 Aligned_cols=58 Identities=9% Similarity=-0.070 Sum_probs=39.5
Q ss_pred HHHHCCCCCEEEECCCHHHHHHHHHHHHHH---------HC-CCEEEEEECHHHHHHHHHHCCCCCCC
Q ss_conf 998389978998879178999999999987---------32-87048961889999998731578655
Q gi|254781054|r 14 AIQYVVDGMTLGMGTGSTAKEFMILLADKI---------AN-GFRVQVIPSSRNTENFCKIHHIPLHS 71 (231)
Q Consensus 14 A~~~v~~gmviGlGtGSTv~~~i~~L~~~~---------~~-~~~i~~v~tS~~t~~~a~~~gi~~~~ 71 (231)
++..+.+-.-|=+-|...|.+|.+.|.+.- ++ .....+.+-...|+..++++|++...
T Consensus 70 ~~~~l~~y~~iIFTS~naV~~f~~~l~~~~~~~~~~~~l~~~~~~~~i~aVG~~Ta~~L~~~G~~~~~ 137 (286)
T 1jr2_A 70 KLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEG 137 (286)
T ss_dssp HHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCSC
T ss_pred HHHCHHHCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEEC
T ss_conf 87283115789997869999999999873664012455543014785999877999999986991006
No 61
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=47.68 E-value=14 Score=16.75 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
Q ss_conf 99789988791789999999999873287048961889999
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTE 59 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~ 59 (231)
++.++|++|+|++.... ...+.....|.....+||+..+.
T Consensus 90 r~d~iiavGGG~v~D~a-kfvA~~~~rgi~~i~iptTlla~ 129 (354)
T 1xah_A 90 RNTAIIAVGGGATGDFA-GFVAATLLRGVHFIQVPTTILAH 129 (354)
T ss_dssp TTCEEEEEESHHHHHHH-HHHHHHBTTCCEEEEEECSTTHH
T ss_pred CCCEEEEECCCCCHHHH-HHHHHHHCCCCCEEECCCCCCCC
T ss_conf 87617996587302259-88899863797426447731012
No 62
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=47.38 E-value=15 Score=16.72 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=44.5
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCEECCCCCE--EEEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 7887267872575899999986322148985-0377225886362578888--998207986898999999627996866
Q gi|254781054|r 130 RGMLPIEIDQFGVNKTLSALKEVASCFGLNE-ELRLRRNGSGLFVSDGGNY--IVDAFFGFIPDPQIISGELCNIPGVIE 206 (231)
Q Consensus 130 ~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~-~lR~~~~~~gp~iTDnGN~--IlD~~~~~i~dp~~le~~L~~IpGVVe 206 (231)
.|+.-++|.-.-.+-++..+-..++..|.+- .+... +.+|.+ .+++...+.....++-.+|+++|||.+
T Consensus 3 ~f~~~L~I~~~Dr~GlL~dIt~~is~~~inI~~i~~~--------~~~~~~~~~i~v~V~d~~~L~~li~~L~~i~~V~~ 74 (88)
T 2ko1_A 3 DFLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLN--------AKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFT 74 (88)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEE--------ECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEE
T ss_pred EEEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEE--------ECCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCE
T ss_conf 6799999999778887999999998779739999997--------04997999999999877889999999977999879
Q ss_pred C
Q ss_conf 4
Q gi|254781054|r 207 H 207 (231)
Q Consensus 207 ~ 207 (231)
.
T Consensus 75 V 75 (88)
T 2ko1_A 75 V 75 (88)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 63
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A*
Probab=47.28 E-value=12 Score=17.35 Aligned_cols=31 Identities=32% Similarity=0.280 Sum_probs=19.7
Q ss_pred EEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf 883165777778799861022699962303513
Q gi|254781054|r 94 LIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 94 lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
.|-=||-+|+| --|.+-+...+|+|.+-+.+
T Consensus 124 nIDIGGptmiR--AAAKN~~~V~Vi~dp~dY~~ 154 (593)
T 1g8m_A 124 KIDIGGVALLR--AAAKNHARVTVVCDPADYSS 154 (593)
T ss_dssp TCCSHHHHHHH--HHHHTTTTCEEECCGGGHHH
T ss_pred HCCCCCHHHHH--HHHHCCCCCEEEECHHHHHH
T ss_conf 51567888889--98736887569813327899
No 64
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=46.51 E-value=15 Score=16.64 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=27.7
Q ss_pred EEECCCHHHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHH
Q ss_conf 988791789999999999873-28704896188999999873
Q gi|254781054|r 24 LGMGTGSTAKEFMILLADKIA-NGFRVQVIPSSRNTENFCKI 64 (231)
Q Consensus 24 iGlGtGSTv~~~i~~L~~~~~-~~~~i~~v~tS~~t~~~a~~ 64 (231)
||=|||.+...+++.|..+.. .+.++++|-.|...-..+++
T Consensus 59 iGcG~G~~~~~il~~l~~~~~~~~~~~~~vD~s~~~l~~ak~ 100 (292)
T 2aot_A 59 IGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKE 100 (292)
T ss_dssp ETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 879799778999998887447877759999898899999999
No 65
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=45.96 E-value=15 Score=16.59 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHCCCC
Q ss_conf 898999999627996
Q gi|254781054|r 189 PDPQIISGELCNIPG 203 (231)
Q Consensus 189 ~dp~~le~~L~~IpG 203 (231)
..|+.++.-.+..|.
T Consensus 162 as~~Gl~~l~~~~P~ 176 (209)
T 1i5e_A 162 AAPEGVKAVETAHPD 176 (209)
T ss_dssp ECHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHCCC
T ss_conf 079999999987949
No 66
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative; 1.95A {Thermotoga maritima MSB8} SCOP: d.58.18.14
Probab=45.34 E-value=16 Score=16.53 Aligned_cols=66 Identities=18% Similarity=0.099 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCE
Q ss_conf 5758999999863221489850377225886362578888998207986898999999627996866480
Q gi|254781054|r 140 FGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGL 209 (231)
Q Consensus 140 ~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~Gl 209 (231)
.........+++++..+|.--.-|++- |+...|=++|.=.-..+......|..+|.++|||=---.
T Consensus 15 edr~~~a~kVneiL~~yg~~I~gRmGi----P~~~~~i~iIsl~v~g~~d~I~~LtgkLg~i~gV~vKt~ 80 (86)
T 2nzc_A 15 EDREKAYRQVNELLHNFSEDILLRVGY----PVREENMAIIFLVLKTDNDTIGALSGKLGQISGVRVKTV 80 (86)
T ss_dssp ESCHHHHHHHHHHHHHTGGGEEEEEEE----EEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEECCC----CCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 680876899999998757878986468----805479229999998888899998776379998899999
No 67
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=43.36 E-value=14 Score=16.75 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=39.6
Q ss_pred HHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCC----CEEEEEECHHHHHHHHHHCCCCCC
Q ss_conf 998389978998879178999999999987328----704896188999999873157865
Q gi|254781054|r 14 AIQYVVDGMTLGMGTGSTAKEFMILLADKIANG----FRVQVIPSSRNTENFCKIHHIPLH 70 (231)
Q Consensus 14 A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~----~~i~~v~tS~~t~~~a~~~gi~~~ 70 (231)
+.+.+.+-..+=.=|+.-|.+|.+.+.+.-.+- .+.++.+-...|+..++++|++..
T Consensus 78 ~~~~l~~~dwivFTS~ngV~~f~~~l~~~~~d~r~~l~~~kiaAvG~kTa~aL~~~Gl~~d 138 (286)
T 3d8t_A 78 VRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPH 138 (286)
T ss_dssp HHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCS
T ss_pred HHHHHCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHCCCEEEEECHHHHHHHHHCCCCCE
T ss_conf 9976158999999686899999999997495688874498799999699999997699816
No 68
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=41.87 E-value=18 Score=16.19 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=27.6
Q ss_pred HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
Q ss_conf 3899789---98879178999999999987328704896188999999873
Q gi|254781054|r 17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI 64 (231)
Q Consensus 17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~ 64 (231)
.+++|+. +|-|||+|+.++.+. ...+ .+.+|-.|...-..|.+
T Consensus 71 ~ikpg~~VLDlGcGtG~~~~~la~~----~~~G-~V~aVDiSp~mi~~a~~ 116 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADI----ADKG-IVYAIEYAPRIMRELLD 116 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHH----TTTS-EEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHH----CCCC-EEEEEECCHHHHHHHHH
T ss_conf 8799999999679779899999975----8996-59999799899999998
No 69
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, NPPSFA; 2.40A {Thermus thermophilus HB8}
Probab=41.54 E-value=18 Score=16.16 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=46.5
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHH-HHHHHCCCCEEECCEE
Q ss_conf 72678725758999999863221489850377225886362578888998207986898999-9996279968664802
Q gi|254781054|r 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQII-SGELCNIPGVIEHGLF 210 (231)
Q Consensus 133 lPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~l-e~~L~~IpGVVe~GlF 210 (231)
+=|++-|-....+.+.+.+ -++++.. ..+|-..++++-+...+..+..++ ...|..+|||..+--+
T Consensus 6 v~i~v~~~~~~~v~~~l~~-------~peV~~~-----~~vtG~~Dli~~v~~~d~~~l~~~l~~~i~~~~gV~~t~T~ 72 (92)
T 2djw_A 6 VLIRPRGNRVQALGEAIAE-------LPQVAEV-----YSVTGPYDLVALVRLKDVEELDDVVTQGILSLEGVERTETL 72 (92)
T ss_dssp EEEEECGGGHHHHHHHHTT-------STTEEEE-----EEESSSSSEEEEEEESSGGGHHHHCCCCCTTSTTEEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHC-------CCCEEEE-----EEECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9999787879999999974-------9888564-----26238888999999899999999999985159999469999
No 70
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=40.99 E-value=18 Score=16.11 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=52.1
Q ss_pred CEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHH
Q ss_conf 26999623035134557887267872575899999986322148985037722588636257888899820798689899
Q gi|254781054|r 114 RFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQI 193 (231)
Q Consensus 114 ~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~ 193 (231)
.|.+++|..|+-...- ..+-+.+-|..+..+.+.+.+ .+.+.... .+|-..|+++-+.+.+..+...
T Consensus 73 ~~~~~vd~~~lg~~~~-a~v~~~~~~~~~~~~~~~l~~-------~p~V~~~~-----~vtG~~dl~~~v~~~~~~~l~~ 139 (171)
T 2e1c_A 73 KFTAIIDPEALGYSML-AFILVKVKAGKYSEVASNLAK-------YPEIVEVY-----ETTGDYDMVVKIRTKNSEELNN 139 (171)
T ss_dssp CCCCCCCGGGGTCCEE-EEEEEEECTTCHHHHHHHHHT-------STTEEEEE-----ECSSSSSEEEEEEESSHHHHHH
T ss_pred EEEEEECHHHHCCCCE-EEEEEEECCCCHHHHHHHHHC-------CCCEEEEE-----EECCCCCEEEEEEECCHHHHHH
T ss_conf 7999988899699628-999987445405899999975-------99878999-----9417887899999899999999
Q ss_pred HHHHHHCCCCEEECCEE
Q ss_conf 99996279968664802
Q gi|254781054|r 194 ISGELCNIPGVIEHGLF 210 (231)
Q Consensus 194 le~~L~~IpGVVe~GlF 210 (231)
+-.+|..+|||..+=-|
T Consensus 140 ~i~~l~~~~gV~~~~t~ 156 (171)
T 2e1c_A 140 FLDLIGSIPGVEGTHTM 156 (171)
T ss_dssp HHHHHHHSTTEEEEEEE
T ss_pred HHHHHHCCCCEEEEEEE
T ss_conf 99998368997499999
No 71
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=40.61 E-value=13 Score=17.10 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=34.5
Q ss_pred HHHHHH---HCCCC-CEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf 999998---38997-89988791789999999999873287048961889999998731578
Q gi|254781054|r 11 ARRAIQ---YVVDG-MTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231)
Q Consensus 11 a~~A~~---~v~~g-mviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231)
+..++. .++.+ .++-.|.|+.+-.+.-.++.. .+.++.++.+|.....+++++|..
T Consensus 132 ~~~~~~~~~~~~~g~~VlV~ga~~~~G~~a~~~a~~--~g~~vi~~~~~~~~~~~~~~lGa~ 191 (340)
T 3gms_A 132 AWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQI--LNFRLIAVTRNNKHTEELLRLGAA 191 (340)
T ss_dssp HHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCS
T ss_pred EEEEECCCCCCCCCCEEEEECCCCEEEEHHHHHHHH--CCCCEEEEECCHHHHHHHHHCCCC
T ss_conf 223100101268997899986884460046766654--257569998676889999975994
No 72
>2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A*
Probab=38.77 E-value=20 Score=15.89 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=45.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECC
Q ss_conf 99789988791789999999999873287048961889999998731578655100880079863300047660588316
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGY 98 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGg 98 (231)
++-.+||.|.|++++.+.+.- ....+.+|--...--..|+++- |... ++ .=|+..+++-+-
T Consensus 80 k~vLiiGgG~G~~~~ellk~~-----~~~~i~~VEiD~~Vi~~a~~~f-~~~~------------~~-~~d~rv~v~~~D 140 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYK-----SVENIDICEIDETVIEVSKIYF-KNIS------------CG-YEDKRVNVFIED 140 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCT-----TCCEEEEEESCHHHHHHHHHHC-TTTS------------GG-GGSTTEEEEESC
T ss_pred CEEEEECCCCHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHHH-HHCC------------CC-CCCCCCCEEECH
T ss_conf 449998388349999999749-----9637999747899999999874-6502------------42-248765289606
Q ss_pred CHHHHHHHHHHHHHCCEEEEEEHH
Q ss_conf 577777879986102269996230
Q gi|254781054|r 99 GGALLREKIIAHAASRFIVIGDES 122 (231)
Q Consensus 99 GgAl~rEKiva~~a~~~I~i~D~s 122 (231)
|-..+++ ...+.=+||+|.+
T Consensus 141 a~~~l~~----~~~~yDvIi~D~~ 160 (283)
T 2i7c_A 141 ASKFLEN----VTNTYDVIIVDSS 160 (283)
T ss_dssp HHHHHHH----CCSCEEEEEEECC
T ss_pred HHHHHHH----CCCCCCEEEEECC
T ss_conf 8999974----6887777999479
No 73
>2qlv_A Carbon catabolite derepressing protein kinase; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: d.129.6.2
Probab=38.12 E-value=8.3 Score=18.25 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=35.2
Q ss_pred CCC-C-CCCCEEEEECCHHHHHHHHHHHHHHCCCCC---------EEEEEECC-------------------CCCEECCC
Q ss_conf 455-7-887267872575899999986322148985---------03772258-------------------86362578
Q gi|254781054|r 127 FLG-R-GMLPIEIDQFGVNKTLSALKEVASCFGLNE---------ELRLRRNG-------------------SGLFVSDG 176 (231)
Q Consensus 127 ~Lg-~-~plPVEV~p~~~~~v~~~l~~~~~~~G~~~---------~lR~~~~~-------------------~gp~iTDn 176 (231)
+|| + -.=|.|| ...+.++|+++ |+.| .+|.|-.. -.-|-+|.
T Consensus 47 h~GIRSr~~P~ei----M~eVyrALk~L----g~eWk~~~~~~~y~ik~Rw~~~~~~~~~~~~~~~~~vk~~lQLYqv~~ 118 (171)
T 2qlv_A 47 HFGIRSRSYPLDV----MGEIYIALKNL----GAEWAKPSEEDLWTIKLRWKYDIGNKTNTNEKIPDLMKMVIQLFQIET 118 (171)
T ss_dssp EESEEECSCHHHH----HHHHHHHHHHH----TCEECCCC---CCEEEEEEC--------------CEEEEEEEEEC---
T ss_pred EECCCCCCCHHHH----HHHHHHHHHHC----CCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC
T ss_conf 5524268998999----99999999976----988963688875278986425877554568888834899999998738
Q ss_pred CCEEEEECCCCCC
Q ss_conf 8889982079868
Q gi|254781054|r 177 GNYIVDAFFGFIP 189 (231)
Q Consensus 177 GN~IlD~~~~~i~ 189 (231)
+||++|.++...+
T Consensus 119 ~~YLlDfK~~g~e 131 (171)
T 2qlv_A 119 NNYLVDFKFDGWE 131 (171)
T ss_dssp CCEEEEEEEEEEE
T ss_pred CCEEEEEECCCCC
T ss_conf 8569998616864
No 74
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=37.60 E-value=12 Score=17.18 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=36.6
Q ss_pred CEEEECCCHHHHHHHHHHHHHHHCC----CEEEEEECHHHHHHHHHHCCCCCCC
Q ss_conf 8998879178999999999987328----7048961889999998731578655
Q gi|254781054|r 22 MTLGMGTGSTAKEFMILLADKIANG----FRVQVIPSSRNTENFCKIHHIPLHS 71 (231)
Q Consensus 22 mviGlGtGSTv~~~i~~L~~~~~~~----~~i~~v~tS~~t~~~a~~~gi~~~~ 71 (231)
.-+=+=|+..|++|.+.+.+.-..- .+.++.+-...|+..++++|++..-
T Consensus 61 D~vifTS~n~V~~~~~~l~~~g~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~~ 114 (261)
T 1wcw_A 61 DLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHA 114 (261)
T ss_dssp SEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSE
T ss_pred CEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCEE
T ss_conf 999997989999999999873940777843987999998999999977998554
No 75
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=37.05 E-value=21 Score=15.73 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=29.5
Q ss_pred CCC-CEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf 997-89988791789999999999873287048961889999998731578
Q gi|254781054|r 19 VDG-MTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231)
Q Consensus 19 ~~g-mviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231)
.++ .++..|+|+.-..+++ |++. .|..+.++.+|......++++|..
T Consensus 164 ~~~~~vv~~g~g~vG~~~~~-la~~--~ga~vi~~~~~~~~~~~~~~lGad 211 (349)
T 3pi7_A 164 GEKAFVMTAGASQLCKLIIG-LAKE--EGFRPIVTVRRDEQIALLKDIGAA 211 (349)
T ss_dssp CCSEEEESSTTSHHHHHHHH-HHHH--HTCEEEEEESCGGGHHHHHHHTCS
T ss_pred CCCCEEEEECCCHHHHHHHH-HHHH--CCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 77746999577505666776-6642--696379998788999999975996
No 76
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=36.48 E-value=22 Score=15.67 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=30.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf 899789988791789999999999873287048961889999998
Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC 62 (231)
Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a 62 (231)
-++..+||+|+|++.... .+.|.....|.....|||+.-+..-+
T Consensus 93 ~r~~~iiaiGGG~v~D~a-gf~As~~~RGi~~i~iPTtlla~vDs 136 (368)
T 2gru_A 93 NRRTAIVAVGGGLTGNVA-GVAAGMMFRGIALIHVPTTFLAASDS 136 (368)
T ss_dssp CTTEEEEEEESHHHHHHH-HHHHHHBTTCCEEEEEECSHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHH-HHHHHHHHCCCCEEECCCCHHCCCCC
T ss_conf 977538996593155489-99999961898379578714116662
No 77
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=36.21 E-value=22 Score=15.64 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=36.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-HHHHHHHHHHCCCCCCCCCC
Q ss_conf 97899887917899999999998732870489618-89999998731578655100
Q gi|254781054|r 20 DGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-SRNTENFCKIHHIPLHSPED 74 (231)
Q Consensus 20 ~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-S~~t~~~a~~~gi~~~~l~~ 74 (231)
...++=+|+|......++.|.+ .+.++.++.- -.+.+.+++++|+...++++
T Consensus 21 ~kkilvIGaG~~~~~~a~~L~~---~~~~v~v~nRt~~ka~~la~~~~~~~~~~~~ 73 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSY---PQYKVTVAGRNIDHVRAFAEKYEYEYVLIND 73 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCT---TTCEEEEEESCHHHHHHHHHHHTCEEEECSC
T ss_pred CCEEEEECCHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999999978999999999985---6984689819999999998750522022420
No 78
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=35.83 E-value=18 Score=16.20 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=38.1
Q ss_pred CHHH-HHHHHHHHHHHHCCCCCEEEECCC-------HHHHHHHHHHHHHHHC-CCE-EEEEECH--HHHHHHHHHCCCCC
Q ss_conf 8789-999999999983899789988791-------7899999999998732-870-4896188--99999987315786
Q gi|254781054|r 2 DALQ-MKRNAARRAIQYVVDGMTLGMGTG-------STAKEFMILLADKIAN-GFR-VQVIPSS--RNTENFCKIHHIPL 69 (231)
Q Consensus 2 ~~~~-~K~~~a~~A~~~v~~gmviGlGtG-------STv~~~i~~L~~~~~~-~~~-i~~v~tS--~~t~~~a~~~gi~~ 69 (231)
|+++ +|+...+. ..+.++-++=.++= .-.....++|+++.+. +.+ +.+++++ .-....|..+|+|.
T Consensus 2 ~~~~~L~~~i~~~--~~v~~~~~~~~~~~l~~~~dP~~~~~i~~~la~~~~~~~~d~Ivg~~~~GiplA~~lA~~L~~p~ 79 (197)
T 1y0b_A 2 NAMEALKRKIEEE--GVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPV 79 (197)
T ss_dssp CHHHHHHHHHHHH--CEEETTTEEECTTTTSSEECHHHHHHHHHHHHHHTTTTTCCEEEEETTTTHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHC--CEECCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCE
T ss_conf 3899999998737--97779995884256465437999999999999983589998999866210999999999869987
Q ss_pred CCCCC
Q ss_conf 55100
Q gi|254781054|r 70 HSPED 74 (231)
Q Consensus 70 ~~l~~ 74 (231)
.....
T Consensus 80 v~~Rk 84 (197)
T 1y0b_A 80 VFARK 84 (197)
T ss_dssp EEEBS
T ss_pred EEEEE
T ss_conf 99985
No 79
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=35.57 E-value=22 Score=15.58 Aligned_cols=13 Identities=8% Similarity=-0.102 Sum_probs=6.8
Q ss_pred CCCCEEEECCCHH
Q ss_conf 9978998879178
Q gi|254781054|r 19 VDGMTLGMGTGST 31 (231)
Q Consensus 19 ~~gmviGlGtGST 31 (231)
+...++|+.+|..
T Consensus 62 ~~d~Ivg~~~gGi 74 (205)
T 2wns_A 62 SFDTVCGVPYTAL 74 (205)
T ss_dssp CCSEEEECTTTTH
T ss_pred CCCEEEECCHHHH
T ss_conf 8875871202218
No 80
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=35.34 E-value=22 Score=15.56 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHC------CCCCEEEECCCHHHHHHHHHHHHHH
Q ss_conf 87899999999999838------9978998879178999999999987
Q gi|254781054|r 2 DALQMKRNAARRAIQYV------VDGMTLGMGTGSTAKEFMILLADKI 43 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v------~~gmviGlGtGSTv~~~i~~L~~~~ 43 (231)
|.+++=+.+|...++.+ +..-+|+|-+|||...+.+.|++..
T Consensus 12 ~~~el~~~~a~~i~~~i~~~~~~~~~~~i~lsGG~tp~~~y~~L~~~~ 59 (266)
T 3eb9_A 12 TPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEH 59 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCGGGCSEEEEECCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 999999999999999999999868998999828788999999998640
No 81
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=34.48 E-value=23 Score=15.47 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=27.0
Q ss_pred HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH
Q ss_conf 3899789---9887917899999999998732870489618899999987
Q gi|254781054|r 17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCK 63 (231)
Q Consensus 17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~ 63 (231)
.+++|+. +|-|||+|+.++.+..+ ..-.+.+|--|......+.
T Consensus 70 ~i~pG~~VLDlG~G~G~~~~~la~~vg----~~G~V~avD~s~~~l~~l~ 115 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVG----WEGKIFGIEFSPRVLRELV 115 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHC----TTSEEEEEESCHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHC----CCCEEEEEECCHHHHHHHH
T ss_conf 989999999971787889999999848----9966999989999999999
No 82
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=34.30 E-value=23 Score=15.45 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHCC------CC-CEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 878999999999998389------97-899887917899999999998732
Q gi|254781054|r 2 DALQMKRNAARRAIQYVV------DG-MTLGMGTGSTAKEFMILLADKIAN 45 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~------~g-mviGlGtGSTv~~~i~~L~~~~~~ 45 (231)
|.+++=+.+|..-++.|. ++ .+|||-+|||-..+.+.|++..+.
T Consensus 8 d~~els~~aA~~i~~~I~~~~~~~~~~~~i~lsGGstP~~~y~~L~~~~~~ 58 (289)
T 1ne7_A 8 HYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKN 58 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999999999734266898899979986899999999999863
No 83
>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli}
Probab=34.15 E-value=23 Score=15.44 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHCCC
Q ss_conf 89899999962799
Q gi|254781054|r 189 PDPQIISGELCNIP 202 (231)
Q Consensus 189 ~dp~~le~~L~~Ip 202 (231)
..|+.++.-.+..|
T Consensus 161 as~~Gi~~l~~~~P 174 (208)
T 2ehj_A 161 AAPEGIAALEKAHP 174 (208)
T ss_dssp ECHHHHHHHHHHCT
T ss_pred ECHHHHHHHHHHCC
T ss_conf 55899999998794
No 84
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=34.12 E-value=24 Score=15.44 Aligned_cols=79 Identities=5% Similarity=0.038 Sum_probs=49.7
Q ss_pred CCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHH
Q ss_conf 22699962303513455788726787257589999998632214898503772258863625788889982079868989
Q gi|254781054|r 113 SRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192 (231)
Q Consensus 113 ~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~ 192 (231)
+.|...+|..|+--... ..+=+.+-|.....+.+.+.+ .|+++... .+|-..++++.++++ |..
T Consensus 50 ~~~~~~id~~~lg~~~~-a~i~i~~~~~~~~~v~~~l~~-------~p~V~~~~-----~vtG~~d~~~~v~~~---d~~ 113 (144)
T 2cfx_A 50 KQYTLEVDQKKLGLPVS-CIVEATVKNADYERFKSYIQT-------LPNIEFCY-----RIAGAACYMLKINAE---SLE 113 (144)
T ss_dssp EEEEEEECTGGGTCCEE-EEEEEEEGGGCHHHHHHHHHT-------CTTEEEEE-----EEESSSSEEEEEEES---SHH
T ss_pred EEEEEECCHHHCCCEEE-EEEEEEECCCCHHHHHHHHHC-------CCCCEEEE-----EEECCCCEEEEEEEC---CHH
T ss_conf 67899918799197289-999999766767889999964-------98502688-----950789899999989---999
Q ss_pred HHHHHHHCCCCEEEC
Q ss_conf 999996279968664
Q gi|254781054|r 193 IISGELCNIPGVIEH 207 (231)
Q Consensus 193 ~le~~L~~IpGVVe~ 207 (231)
+++..+..++||..+
T Consensus 114 ~l~~~i~~i~~v~~~ 128 (144)
T 2cfx_A 114 AVEDFINKTSPYAQT 128 (144)
T ss_dssp HHHHHHHHHTTTEEE
T ss_pred HHHHHHHHCCCCCCE
T ss_conf 999999965885643
No 85
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=33.00 E-value=25 Score=15.32 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=8.1
Q ss_pred CCCHHHHHHHHHCCCC
Q ss_conf 6898999999627996
Q gi|254781054|r 188 IPDPQIISGELCNIPG 203 (231)
Q Consensus 188 i~dp~~le~~L~~IpG 203 (231)
+..|+.++.-.+..|+
T Consensus 173 ias~~Gi~~i~~~~P~ 188 (221)
T 1o5o_A 173 IAAPEGVEAVEKKYED 188 (221)
T ss_dssp EECHHHHHHHHHHCTT
T ss_pred EECHHHHHHHHHHCCC
T ss_conf 8558999999987879
No 86
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=32.47 E-value=25 Score=15.32 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=27.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC
Q ss_conf 899789988791789999999999873287048961889999998731
Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH 65 (231)
Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~ 65 (231)
.++-.+||.|+|+|++.+++.- ....+++|-=...--..|+++
T Consensus 76 pk~VLiiGgG~G~~~~~~l~~~-----~~~~v~~VEiD~~Vi~~a~~~ 118 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHP-----SVKKATLVDIDGKVIEYSKKF 118 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCT-----TCSEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHCC-----CCCEEEEEEECHHHHHHHHHH
T ss_conf 6759999079639999999659-----964699997088999999985
No 87
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=31.80 E-value=16 Score=16.50 Aligned_cols=138 Identities=10% Similarity=0.073 Sum_probs=75.2
Q ss_pred HHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCC---CEEEEEECCHHCCCCC
Q ss_conf 9838997899887917899999999998732870489618899999987315786551008---8007986330004766
Q gi|254781054|r 15 IQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDV---SSVDLSIDGFDEIDSR 91 (231)
Q Consensus 15 ~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~---~~iDi~iDGaDevd~~ 91 (231)
+..+..-..|=+-|...|.+|.+.+.+ ...++++.+-+..|+..+.+.|+........ ....+.....-+.+..
T Consensus 45 l~~l~~~d~iIftS~~av~~~~~~~~~---~~~~~~~~avG~~Ta~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (240)
T 3mw8_A 45 LDELSRADILIFISTSAVSFATPWLKD---QWPKATYYAVGDATADALALQGITAERSPADSQATEGLLTLPSLEQVSGK 121 (240)
T ss_dssp HHHHTTCSEEEECSHHHHHHHHHHHTT---CCCSSEEEESSHHHHHHHHHTTCCCEECC---CCGGGGGGCGGGTCCTTC
T ss_pred HHHHCCCCEEEEECHHHHHHHHHHHHH---HCCCCCEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 852024899999888999999998776---34688599983899999998599764367630478887504554125787
Q ss_pred -CEEEECCCH-HHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CC-----CCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf -058831657-77778799861022699962303513455-78-----872678725758999999863221
Q gi|254781054|r 92 -LRLIKGYGG-ALLREKIIAHAASRFIVIGDESKRVDFLG-RG-----MLPIEIDQFGVNKTLSALKEVASC 155 (231)
Q Consensus 92 -l~lIKGgGg-Al~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~-----plPVEV~p~~~~~v~~~l~~~~~~ 155 (231)
.-...|+++ -.+.+++-....+-.-+++=++...+... .. .-.+.++.|......+.+.+.+..
T Consensus 122 ~il~~~~~~~~~~l~~~l~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~f~S~~~v~~~~~~~~~ 193 (240)
T 3mw8_A 122 QIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVPK 193 (240)
T ss_dssp EEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 589853776632578999867986999987555458756589999998289989997899999999998555
No 88
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei}
Probab=30.54 E-value=27 Score=15.07 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=4.5
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 7917899999999
Q gi|254781054|r 27 GTGSTAKEFMILL 39 (231)
Q Consensus 27 GtGSTv~~~i~~L 39 (231)
+||+|+..+|+.|
T Consensus 140 ATG~s~~~ai~~L 152 (217)
T 3dmp_A 140 ATGYSAAHAIDVL 152 (217)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 5775799999999
No 89
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=30.37 E-value=22 Score=15.66 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=29.3
Q ss_pred CCCEEEE---CCCHHHHHHHHHHHHHHHCCCEEEEEECH--HHHHHHHHHCCCCCCCCCC
Q ss_conf 9789988---79178999999999987328704896188--9999998731578655100
Q gi|254781054|r 20 DGMTLGM---GTGSTAKEFMILLADKIANGFRVQVIPSS--RNTENFCKIHHIPLHSPED 74 (231)
Q Consensus 20 ~gmviGl---GtGSTv~~~i~~L~~~~~~~~~i~~v~tS--~~t~~~a~~~gi~~~~l~~ 74 (231)
+-|.|++ |+||+....+++... .....+..|-++ ......|+++|||...++.
T Consensus 11 ~p~riavl~SG~Gsnl~aLi~~~~~--~~~~~iv~vi~~~~~~~~~~A~~~gIp~~~i~~ 68 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAVG--DYPARVVAVGVDRECRAAEIAAEASVPVFTVRL 68 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSST--TCSEEEEEEEESSCCHHHHHHHHTTCCEEECCG
T ss_pred CCCEEEEEECCCCHHHHHHHHHHCC--CCCCEEEEEEECCCHHHHHHHHHCCCCEEEEEC
T ss_conf 9888999983682659999996377--999779999967856688999983997377405
No 90
>2obb_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.108.1.25
Probab=30.13 E-value=27 Score=15.02 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCEEEEEEC-----HHHHHHHHHHCCCCCCCCCCC--------------CEEEEEECC
Q ss_conf 999999998732870489618-----899999987315786551008--------------800798633
Q gi|254781054|r 34 EFMILLADKIANGFRVQVIPS-----SRNTENFCKIHHIPLHSPEDV--------------SSVDLSIDG 84 (231)
Q Consensus 34 ~~i~~L~~~~~~~~~i~~v~t-----S~~t~~~a~~~gi~~~~l~~~--------------~~iDi~iDG 84 (231)
..|+.|.+....|..|...++ ...|...++++|||.-.++.. +.-|+|||-
T Consensus 28 ~~Ie~l~~L~~~G~~III~TaR~~~~~~~t~~wL~k~gi~fd~in~~~~~~~~~~~~~~~Kp~aD~yIDD 97 (142)
T 2obb_A 28 FAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKDYPEEERDHQGFSRKLKADLFIDD 97 (142)
T ss_dssp THHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESSSSTTC---CCSCCSSCCCSEEECT
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 9999999999779979999368974179999999992998416304685323435554699506698857
No 91
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=29.99 E-value=28 Score=15.01 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=15.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCC
Q ss_conf 899789988791789999999999873287
Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGF 47 (231)
Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~ 47 (231)
+.+||.-|=|+=.|+...++.|.+..+.+.
T Consensus 93 i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~ 122 (254)
T 2nxc_A 93 IEPGMAFGTGHHETTRLALKALARHLRPGD 122 (254)
T ss_dssp CCCC-----CCSHHHHHHHHHHHHHCCTTC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 778876779998899999999984179979
No 92
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134}
Probab=29.88 E-value=28 Score=15.00 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 899789988791789999999999873287048961889
Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSR 56 (231)
Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~ 56 (231)
-+...+||+|.||+.... +.++- ..++-+..|||+.
T Consensus 88 ~~~D~IiavGGGs~iD~a-K~ia~--~~~~P~i~vPTta 123 (358)
T 3jzd_A 88 AGADCAVAVGGGSTTGLG-KAIAL--ETGMPIVAIPTTY 123 (358)
T ss_dssp HTCSEEEEEESHHHHHHH-HHHHH--HHCCCEEEEECSS
T ss_pred CCCCEEEEECCCCCCCCC-CCEEE--ECCCCEECCCCCC
T ss_conf 499989996884545654-11254--0458641256525
No 93
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1}
Probab=29.10 E-value=29 Score=14.91 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEEC
Q ss_conf 9999986322148985037722588636257888899820
Q gi|254781054|r 145 TLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAF 184 (231)
Q Consensus 145 v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~ 184 (231)
..+...+++..+|++.-.|.- +++++++-|++.+.
T Consensus 288 i~~~a~k~~~~lg~~G~~rvD-----f~~~~~~~yviEIN 322 (367)
T 2pvp_A 288 LKENFKKLYSDLFDGAIIRCD-----FFVIENEVYLNEIN 322 (367)
T ss_dssp HHHHHHHHHTTTSTTCCEEEE-----EEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEE-----EEEECCEEEEEEEC
T ss_conf 999999999996993769999-----99999999999861
No 94
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=29.06 E-value=29 Score=14.91 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=31.3
Q ss_pred CCEEEEEECCCCCEECCCCCEEEEECCCCCCCH-HHHHHHHHCCCCEEECCE
Q ss_conf 850377225886362578888998207986898-999999627996866480
Q gi|254781054|r 159 NEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDP-QIISGELCNIPGVIEHGL 209 (231)
Q Consensus 159 ~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp-~~le~~L~~IpGVVe~Gl 209 (231)
.++++... .+|-..+|++.+++.+..+- ..+...|..+|||-.+--
T Consensus 88 ~p~V~~~~-----~vtG~~D~~~~v~~~~~~~~~~~i~~~l~~~~gV~~~~t 134 (150)
T 2pn6_A 88 IPGVWGVY-----FVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTST 134 (150)
T ss_dssp STTEEEEE-----ECSSSCSEEEEEEESSHHHHHHHTHHHHTTCTTEEEEEE
T ss_pred CCCCEEEE-----EECCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98740888-----953887789999979999999999999727999828999
No 95
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3
Probab=28.54 E-value=29 Score=14.85 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=25.9
Q ss_pred HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHH----HHHHHCC
Q ss_conf 3899789---988791789999999999873287048961889999----9987315
Q gi|254781054|r 17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTE----NFCKIHH 66 (231)
Q Consensus 17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~----~~a~~~g 66 (231)
.+++|+. +|-|||.|+.++ ++....+ .+.+|-.|...- ..+++.+
T Consensus 54 ~ikpg~~VLDlG~GtG~~~~~l----a~~~~~g-~V~avD~s~~~i~~a~~~a~~~~ 105 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHL----ADIVDEG-IIYAVEYSAKPFEKLLELVRERN 105 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHH----HHHTTTS-EEEEECCCHHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEECCCCCHHHHHH----HHHCCCC-EEEEEECCHHHHHHHHHHHHHCC
T ss_conf 8899899999568888889999----9743698-59999699999999997786489
No 96
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=27.51 E-value=30 Score=14.74 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHC------C-C-CCEEEECCCHHHHHHHHHHHHH
Q ss_conf 87899999999999838------9-9-7899887917899999999998
Q gi|254781054|r 2 DALQMKRNAARRAIQYV------V-D-GMTLGMGTGSTAKEFMILLADK 42 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v------~-~-gmviGlGtGSTv~~~i~~L~~~ 42 (231)
|..++=+.||..-++.| + + .-+|||=||||-..+-+.|+..
T Consensus 34 d~~~~~~~aa~~i~~~i~~k~~~~~~~~~vl~LsGGsTP~~~Y~~L~~~ 82 (312)
T 3e15_A 34 DLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALV 82 (312)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEECCSHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 8878999999999999998786465998899968980199999999976
No 97
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=27.46 E-value=30 Score=14.74 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=30.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH
Q ss_conf 8997899887917899999999998732870489618899999987
Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCK 63 (231)
Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~ 63 (231)
=++.+++++|.|.+.... ...|.....|.....+||+..+..-+.
T Consensus 122 ~r~~~viaiGGG~v~Dla-gfvAs~y~RGi~~i~iPTTlla~vDss 166 (390)
T 3okf_A 122 SRDVVVIALGGGVIGDLV-GFAAACYQRGVDFIQIPTTLLSQVDSS 166 (390)
T ss_dssp CTTCEEEEEESHHHHHHH-HHHHHHBTTCCEEEEEECSHHHHHHTS
T ss_pred CCCCEEEEECCCCCHHHH-HHHHHHHHCCCCEEECCCHHHCCCCCC
T ss_conf 877137971797203188-999999828975564043564056523
No 98
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=27.45 E-value=30 Score=14.73 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=43.4
Q ss_pred HCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC-CCCCC-----------CCEEEEEEC
Q ss_conf 3899789-9887917899999999998732870489618899999987315786-55100-----------880079863
Q gi|254781054|r 17 YVVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPL-HSPED-----------VSSVDLSID 83 (231)
Q Consensus 17 ~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~-~~l~~-----------~~~iDi~iD 83 (231)
..+++.+ +-.|+|+...++++.+..+ .+.++.++.+|.....+++++|-.. ++.++ ...+|+.||
T Consensus 183 ~~~~g~~vli~G~g~vg~~~~q~~~~~--g~~~Vi~v~~~~~k~~~~~~lGa~~~i~~~~~~~~~i~~~t~~~g~d~v~d 260 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVM--TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMD 260 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHH--CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 378996699987487899999999984--899899997989999999842990898677588999999847998329998
Q ss_pred CH
Q ss_conf 30
Q gi|254781054|r 84 GF 85 (231)
Q Consensus 84 Ga 85 (231)
-+
T Consensus 261 ~~ 262 (359)
T 1h2b_A 261 FV 262 (359)
T ss_dssp SS
T ss_pred CC
T ss_conf 78
No 99
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=27.01 E-value=31 Score=14.69 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=34.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCC-CCCCCCEEEEEECCH
Q ss_conf 9978998879178999999999987328704896188999999873157865-510088007986330
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH-SPEDVSSVDLSIDGF 85 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~-~l~~~~~iDi~iDGa 85 (231)
++-.+||.|+|+|++.+.+.- ...++++|--...--..|+++- |.. ...+.+++.+.++-|
T Consensus 92 k~VLiiGgG~G~~~~e~l~~~-----~~~~v~~VEID~~Vi~~a~~~~-~~~~~~~~d~rv~ii~~Da 153 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHD-----SVEKAILCEVDGLVIEAARKYL-KQTSCGFDDPRAEIVIANG 153 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTST-----TCSEEEEEESCHHHHHHHHHHC-HHHHGGGGCTTEEEEESCH
T ss_pred CEEEEECCCCHHHHHHHHHCC-----CCCCEEEECCCHHHHHHHHHHH-HHHCCCCCCCCCEEEEHHH
T ss_conf 879998798279999999649-----9771788635789999999876-7622433699608996148
No 100
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=26.78 E-value=31 Score=14.66 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCE-EEEEECH--HHHHHHHHHCCCCCCCCCC
Q ss_conf 7917899999999998732-870-4896188--9999998731578655100
Q gi|254781054|r 27 GTGSTAKEFMILLADKIAN-GFR-VQVIPSS--RNTENFCKIHHIPLHSPED 74 (231)
Q Consensus 27 GtGSTv~~~i~~L~~~~~~-~~~-i~~v~tS--~~t~~~a~~~gi~~~~l~~ 74 (231)
+........++.++++.+. ..+ +.++.++ .-....|..+|.|+.-...
T Consensus 33 ~~P~~~~~l~~~la~~~~~~~~d~Vvgie~~Gi~lA~~lA~~Lg~p~v~~rk 84 (186)
T 1l1q_A 33 STPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRK 84 (186)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCCCEEEEESGGGHHHHHHHHHHHTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 7999999999999997066999799984554447789999981998787761
No 101
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Chromobacterium violaceum atcc 12472} SCOP: d.218.1.12
Probab=26.03 E-value=23 Score=15.46 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=45.5
Q ss_pred CEEEEEEHHHCCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHH
Q ss_conf 269996230351345578872678725-7589999998632214898503772258863625788889982079868989
Q gi|254781054|r 114 RFIVIGDESKRVDFLGRGMLPIEIDQF-GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192 (231)
Q Consensus 114 ~~I~i~D~sK~v~~Lg~~plPVEV~p~-~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~ 192 (231)
+=|++.|=++... +..|-+=...... -.......+.+.++..|.++.-+.+...++..+-|.|++++-++.+..-+-+
T Consensus 20 ~DI~vlDv~~~~~-~~Dy~VI~Tg~S~rh~~aia~~v~~~lk~~~~~~~~~eG~~~~~WillD~gdivVHif~~e~R~~Y 98 (130)
T 2id1_A 20 KDIIELDTSKLTS-LFQRMIVATGDSNRQVKALANSVQVKLKEAGVDIVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYY 98 (130)
T ss_dssp EEEEEEEGGGTCS-SCSEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCCBCCSTTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCEEEEECCCCCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHC
T ss_conf 8759998889975-037899998386899999999999999983997554347778988999558489982898998675
Q ss_pred HHHHHH
Q ss_conf 999996
Q gi|254781054|r 193 IISGEL 198 (231)
Q Consensus 193 ~le~~L 198 (231)
.||.-=
T Consensus 99 ~LE~LW 104 (130)
T 2id1_A 99 DIEALW 104 (130)
T ss_dssp CHHHHT
T ss_pred CHHHHH
T ss_conf 888886
No 102
>2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A*
Probab=25.75 E-value=33 Score=14.54 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=44.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCEEEEC
Q ss_conf 89978998879178999999999987328704896188999999873157865510088007986330004766058831
Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKG 97 (231)
Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKG 97 (231)
.++-.+||.|.|++++.+.+.- ....+.+|--...--..|+++ +|... ++ .=|++.+++-+
T Consensus 117 pk~VLIiGgGdG~~~rellk~~-----~~~~v~~VEID~~Vv~~ak~~-f~~~~------------~~-~~dprv~v~~~ 177 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYK-----SVENIDICEIDETVIEVSKIY-FKNIS------------CG-YEDKRVNVFIE 177 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCT-----TCCEEEEEESCHHHHHHHHHH-CTTTS------------GG-GGSTTEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHCC-----CCCCEEEECCCHHHHHHHHHH-HHHHC------------CC-CCCCCEEEEEC
T ss_conf 5769998489539999999729-----964147852579999999986-26623------------44-36876269961
Q ss_pred CCHHHHHHHHHHHHHCCEEEEEEHH
Q ss_conf 6577777879986102269996230
Q gi|254781054|r 98 YGGALLREKIIAHAASRFIVIGDES 122 (231)
Q Consensus 98 gGgAl~rEKiva~~a~~~I~i~D~s 122 (231)
-|-..+++ ...+.=+||+|.+
T Consensus 178 Da~~~l~~----~~~~yDvIi~D~~ 198 (321)
T 2pt6_A 178 DASKFLEN----VTNTYDVIIVDSS 198 (321)
T ss_dssp CHHHHHHH----CCSCEEEEEEECC
T ss_pred HHHHHHHH----CCCCCCEEEEECC
T ss_conf 69999873----6676677999379
No 103
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1
Probab=25.51 E-value=33 Score=14.52 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=3.8
Q ss_pred CCHHHHHHHHHH
Q ss_conf 917899999999
Q gi|254781054|r 28 TGSTAKEFMILL 39 (231)
Q Consensus 28 tGSTv~~~i~~L 39 (231)
||+|+...|+.|
T Consensus 135 TG~s~~~ai~~L 146 (208)
T 1v9s_A 135 TGGSASLALSLL 146 (208)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 437799999999
No 104
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=24.87 E-value=34 Score=14.44 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=29.1
Q ss_pred HHHHHHHCCCCCE-E--EECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH
Q ss_conf 9999983899789-9--887917899999999998732870489618899999987
Q gi|254781054|r 11 ARRAIQYVVDGMT-L--GMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCK 63 (231)
Q Consensus 11 a~~A~~~v~~gmv-i--GlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~ 63 (231)
.+--.++|++|++ + |-|||..+. .|+++.....++.++-.|..--..|+
T Consensus 13 ~~~l~~~ik~G~~VLDlGcG~G~~t~----~la~~~~~~~~V~giDis~~~l~~ar 64 (197)
T 3eey_A 13 HDYIKMFVKEGDTVVDATCGNGNDTA----FLASLVGENGRVFGFDIQDKAIANTT 64 (197)
T ss_dssp HHHHHHHCCTTCEEEESCCTTSHHHH----HHHHHHCTTCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEEEECCHHHH----HHHHHHCCCEEEEEEECCHHHHHHHH
T ss_conf 99999858999999999204889999----99998389819999973889989999
No 105
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogenic protozoa consortium, SGPP, leishmaniasis; 1.70A {Leishmania braziliensismhom} PDB: 3ch7_A
Probab=24.85 E-value=34 Score=14.44 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHC-----CCC-CEEEECCCHHHHHHHHHHHHHH
Q ss_conf 87899999999999838-----997-8998879178999999999987
Q gi|254781054|r 2 DALQMKRNAARRAIQYV-----VDG-MTLGMGTGSTAKEFMILLADKI 43 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v-----~~g-mviGlGtGSTv~~~i~~L~~~~ 43 (231)
|.+++=+.+|...++.+ +++ -+|+|-+|||...+.+.|.++-
T Consensus 13 d~~~l~~~aa~~i~~~i~~~~~~~~~~~l~lsGG~tp~~~y~~L~~~~ 60 (267)
T 3css_A 13 NLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEKD 60 (267)
T ss_dssp SHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCSSTTHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 999999999999999999999718998999789778999999996505
No 106
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase, multiple conformers; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=24.68 E-value=34 Score=14.42 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHCC-----CC--CEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 878999999999998389-----97--899887917899999999998732
Q gi|254781054|r 2 DALQMKRNAARRAIQYVV-----DG--MTLGMGTGSTAKEFMILLADKIAN 45 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~-----~g--mviGlGtGSTv~~~i~~L~~~~~~ 45 (231)
|.+++=+.+|..-++.|+ .+ -+|+|-+|||-..+.+.|.+..+.
T Consensus 8 ~~ee~~~~aA~~i~~~I~~~~~~~~~~~~i~lsgGstP~~~y~~L~~~~~~ 58 (266)
T 1fs5_A 8 TAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKA 58 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSSTTHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999999999735356897799989995599999999988861
No 107
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=24.67 E-value=34 Score=14.42 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHH
Q ss_conf 9999998632214898503772258863625788889982079868989999
Q gi|254781054|r 144 KTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIIS 195 (231)
Q Consensus 144 ~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le 195 (231)
.....+++.++..|..+.-+.+...++.++-|-|++++-++.+..-+-+.||
T Consensus 50 aia~~v~~~lk~~~~~~~~~EG~~~~~WvllD~gdivVHIf~~e~Re~Y~LE 101 (125)
T 2o5a_A 50 AIAHELKKVAQEQGIEIKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLE 101 (125)
T ss_dssp HHHHHHHHHHHHTTCCCCEEESTTTTSEEEEECSSEEEEEEETTCGGGTSTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHCCHH
T ss_conf 9999999999983997520117757999999768489986898998775888
No 108
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=24.19 E-value=35 Score=14.36 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=34.3
Q ss_pred HCCCCC-EEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC
Q ss_conf 389978-99887917899999999998732870489618899999987315786
Q gi|254781054|r 17 YVVDGM-TLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPL 69 (231)
Q Consensus 17 ~v~~gm-viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~ 69 (231)
.+++++ ++-.|.|.+..++++.+... -...+.++..|..-...++++|...
T Consensus 187 ~~~~~~~v~v~G~G~~G~~~~~~a~~~--G~~~Vi~~d~~~~k~~~~~~~Ga~~ 238 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQLGATH 238 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHHHTCSE
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHCCCEE
T ss_conf 566688799758458999999999985--9978999919889999999719805
No 109
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=23.95 E-value=33 Score=14.52 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=45.0
Q ss_pred CCEEEEEEHHHCCCCCCCCCCCEEEEE---CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCC
Q ss_conf 226999623035134557887267872---57589999998632214898503772258863625788889982079868
Q gi|254781054|r 113 SRFIVIGDESKRVDFLGRGMLPIEIDQ---FGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIP 189 (231)
Q Consensus 113 ~~~I~i~D~sK~v~~Lg~~plPVEV~p---~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~ 189 (231)
+.|...+|..|+-..+ -.-|++-. -....+.+.+.+ .+.++.. ..+|-..+|++-+++.+..
T Consensus 52 ~~~~~~id~~~lg~~~---~a~i~i~~~~~~~~~~~~~~l~~-------~p~V~~~-----~~vtG~~D~i~~v~~~~~~ 116 (150)
T 2w25_A 52 QGYSARINPEAVGHLL---SAFVAITPLDPSQPDDAPARLEH-------IEEVESC-----YSVAGEASYVLLVRVASAR 116 (150)
T ss_dssp EEEEEEECTGGGTCCE---EEEEEEEESCTTSCCCHHHHHTT-------CTTEEEE-----EEESSSCSEEEEEEESSHH
T ss_pred CCCCCCCCCHHCCCEE---EEEEEEEECCCCCHHHHHHHHHC-------CCEEEEE-----EEECCCCCEEEEEEECCHH
T ss_conf 1001016801149708---99999997156207999999861-------6847289-----9936998899999989999
Q ss_pred CHHHHHHHHHCCCCEEE
Q ss_conf 98999999627996866
Q gi|254781054|r 190 DPQIISGELCNIPGVIE 206 (231)
Q Consensus 190 dp~~le~~L~~IpGVVe 206 (231)
+..++-.+|..+|||-.
T Consensus 117 ~l~~~~~~i~~~~gV~~ 133 (150)
T 2w25_A 117 ALEDLLQRIRTTANVRT 133 (150)
T ss_dssp HHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHCCCCCEEE
T ss_conf 99999998606898779
No 110
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=23.92 E-value=35 Score=14.33 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=41.7
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEE-CHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3899789988791789999999999873287048961-8899999987315786551008
Q gi|254781054|r 17 YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIP-SSRNTENFCKIHHIPLHSPEDV 75 (231)
Q Consensus 17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~-tS~~t~~~a~~~gi~~~~l~~~ 75 (231)
-.++..++=+|+|.+...++++|.++- ..++.++. |..+...++.++|....++++.
T Consensus 164 ~l~~~~vLviGaGem~~~~~~~L~~~g--~~~i~v~nRt~~rA~~la~~~~~~~~~~~~l 221 (404)
T 1gpj_A 164 SLHDKTVLVVGAGEMGKTVAKSLVDRG--VRAVLVANRTYERAVELARDLGGEAVRFDEL 221 (404)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHC--CSEEEEECSSHHHHHHHHHHHTCEECCGGGH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CCCEEEECCCHHHHHHHHHHCCCEEECHHHH
T ss_conf 733481899838488999999999568--8860786687667888765059757426877
No 111
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=23.85 E-value=20 Score=15.86 Aligned_cols=10 Identities=30% Similarity=0.694 Sum_probs=4.3
Q ss_pred CCCEEEECCC
Q ss_conf 9789988791
Q gi|254781054|r 20 DGMTLGMGTG 29 (231)
Q Consensus 20 ~gmviGlGtG 29 (231)
...++|+-+|
T Consensus 59 ~d~Vvg~~~g 68 (178)
T 2yzk_A 59 SSAVIGVATG 68 (178)
T ss_dssp CSEEEEETTT
T ss_pred CCEEEEECCC
T ss_conf 8989987377
No 112
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=23.57 E-value=36 Score=14.29 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=28.8
Q ss_pred CEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEE--ECHHHHHHHHHHCCCCC
Q ss_conf 8998-879178999999999987328704896--18899999987315786
Q gi|254781054|r 22 MTLG-MGTGSTAKEFMILLADKIANGFRVQVI--PSSRNTENFCKIHHIPL 69 (231)
Q Consensus 22 mviG-lGtGSTv~~~i~~L~~~~~~~~~i~~v--~tS~~t~~~a~~~gi~~ 69 (231)
+.+| +|+|+-...+++.|.+ ..+..+.++ ++....+..++++|+|.
T Consensus 6 ir~giIG~G~i~~~h~~~l~~--~~~~~l~av~d~~~~~~~~~a~~~~~~~ 54 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRE--SAQAEVRGIASRRLENAQKMAKELAIPV 54 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHH--SSSEEEEEEBCSSSHHHHHHHHHTTCCC
T ss_pred CEEEEECCHHHHHHHHHHHHH--CCCCEEEEEECCCHHHHHHHHHHCCCCE
T ss_conf 589999883999999999974--8992899998899999999999839980
No 113
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A*
Probab=23.42 E-value=36 Score=14.27 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCCCEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCC-CEEEEEECCHHCCCCCCEE
Q ss_conf 8997899887--917899999999998732870489618899999987315786551008-8007986330004766058
Q gi|254781054|r 18 VVDGMTLGMG--TGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDV-SSVDLSIDGFDEIDSRLRL 94 (231)
Q Consensus 18 v~~gmviGlG--tGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~-~~iDi~iDGaDevd~~l~l 94 (231)
.+.|...=+| +||.-.+++..+.++.. ..-+.++++..+-+.++..+.. . ..+.+ --+++-+--.|.+.++-..
T Consensus 11 ~~~g~~~~~~gl~gsa~a~~~a~~~~~~~-~p~liV~~~~~~A~~l~~dL~~-~-~~~~v~~~P~~e~lpye~~~~~~~~ 87 (483)
T 3hjh_A 11 VKAGEQRLLGELTGAACATLVAEIAERHA-GPVVLIAPDMQNALRLHDEISQ-F-TDQMVMNLADWETLPYDSFSPHQDI 87 (483)
T ss_dssp CSTTCEEEEECCCTTHHHHHHHHHHHHSS-SCEEEEESSHHHHHHHHHHHHH-T-CSSCEEECCCCCSCTTCSSCCCHHH
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHHHH-C-CCCCEEECCCCCCCCCCCCCCCHHH
T ss_conf 99998689558774699999999999758-9999990899999999999985-2-6854056675445776667985699
Q ss_pred EECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCC------EEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 8316577777879986102269996230351345578872------6787257589999998632214898503772258
Q gi|254781054|r 95 IKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLP------IEIDQFGVNKTLSALKEVASCFGLNEELRLRRNG 168 (231)
Q Consensus 95 IKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plP------VEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~ 168 (231)
+--+=.+|.+ + +. .+..|+|+--.=+...+ |-| .-.+.-+...-...|.+.+..+||.-+-+....
T Consensus 88 ~~~R~~~L~~--L-~~-~~~~iivtt~~al~~~~---~~~~~~~~~~~~l~~G~~~~~~~l~~~L~~~GY~r~~~Ve~~- 159 (483)
T 3hjh_A 88 ISSRLSTLYQ--L-PT-MQRGVLIVPVNTLMQRV---CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH- 159 (483)
T ss_dssp HHHHHHHHHH--G-GG-CCSSEEEEEHHHHHBCC---CCHHHHHHTCEEEETTCCCCHHHHHHHHHHTTCEECSSCCST-
T ss_pred HHHHHHHHHH--H-CC-CCCCCEEEEHHHHHCCC---CCHHHHHHCCEEEECCCEECHHHHHHHHHHHCCCCCCEECCC-
T ss_conf 9999999998--6-34-89985696667741889---989999717578726989558999999999589553333047-
Q ss_pred CCCEECCCCCEEEEECCCCCCCHHHH
Q ss_conf 86362578888998207986898999
Q gi|254781054|r 169 SGLFVSDGGNYIVDAFFGFIPDPQII 194 (231)
Q Consensus 169 ~gp~iTDnGN~IlD~~~~~i~dp~~l 194 (231)
|=|--..| |+|++.+.-+.|..+
T Consensus 160 -GefsvRGg--IiDIfp~~~~~PvRI 182 (483)
T 3hjh_A 160 -GEYATRGA--LLDLFPMGSELPYRL 182 (483)
T ss_dssp -TEEEEETT--EEEECCBTCSSCEEE
T ss_pred -CEEEEECC--EEEECCCCCCCCEEE
T ss_conf -56998789--758743667963899
No 114
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=23.26 E-value=36 Score=14.25 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=32.4
Q ss_pred HHHHHHHHHHC---CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC
Q ss_conf 99999999838---99789988791789999999999873287048961889999998731
Q gi|254781054|r 8 RNAARRAIQYV---VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH 65 (231)
Q Consensus 8 ~~~a~~A~~~v---~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~ 65 (231)
++.+.-++-.. ++-.+||.|.|+|++.+++.. ....++.|--....-..|+++
T Consensus 108 Eml~h~pl~~h~~PkrVLIIGgGdG~~~revlk~~-----~v~~v~~VEID~~Vi~~a~~~ 163 (334)
T 1xj5_A 108 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHA-----SIEQIDMCEIDKMVVDVSKQF 163 (334)
T ss_dssp HHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCT-----TCCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCC-----CCCCCEEECCCHHHHHHHHHH
T ss_conf 99888887519998869998899489999999749-----965335750589999999975
No 115
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
Probab=21.53 E-value=40 Score=14.03 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=28.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC
Q ss_conf 99789988791789999999999873287048961889999998731
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH 65 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~ 65 (231)
++-.+||.|.|+|++.+.+.- ....+.+|--...--..|+++
T Consensus 97 k~VLIiGgG~G~~~~ellk~~-----~~~~v~~VEiD~~Vi~~a~~~ 138 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVVKHP-----SVESVVQCEIDEDVIQVSKKF 138 (304)
T ss_dssp CEEEEEECTTSHHHHHHTTCT-----TCCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHH
T ss_conf 869998799459999998659-----853268760469999999985
No 116
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
Probab=21.27 E-value=34 Score=14.47 Aligned_cols=78 Identities=28% Similarity=0.262 Sum_probs=41.8
Q ss_pred CEEEECC--CHHHHHHHHHHHHHHH----CCCEEEEEECHHHHHHHHHHCCC----------CCCCC-CCCCEEEEEECC
Q ss_conf 8998879--1789999999999873----28704896188999999873157----------86551-008800798633
Q gi|254781054|r 22 MTLGMGT--GSTAKEFMILLADKIA----NGFRVQVIPSSRNTENFCKIHHI----------PLHSP-EDVSSVDLSIDG 84 (231)
Q Consensus 22 mviGlGt--GSTv~~~i~~L~~~~~----~~~~i~~v~tS~~t~~~a~~~gi----------~~~~l-~~~~~iDi~iDG 84 (231)
|.||+|. |||+..-+.++...+. +|. -..=+....|+.-..++|. |.-++ .-+.-=||.|+|
T Consensus 80 mLvG~gGn~~TT~~aG~~A~r~gl~~~tk~g~-~~an~~Gsvtq~stirlG~~~~~~~~v~~P~~d~lPl~~~~DlVfGG 158 (537)
T 1vko_A 80 LLVGLGGNNGSTAVGSIFANQYAMTWRTKEGH-SQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISG 158 (537)
T ss_dssp EEETTTSHHHHHHHHHHHHHHTTCEEEETTEE-EECCCTTCHHHHCEEEEEEETTTTEEEEEEGGGTSCCCCGGGEEEEE
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCEECCEEECCCCCCCCCCCCCCHHHCCCCCCCCCEEEEC
T ss_conf 99548842899999999998769976544665-36887350100132222555677872455376528999815479934
Q ss_pred HHCCCCCCEEEECCCHHHHHHH
Q ss_conf 0004766058831657777787
Q gi|254781054|r 85 FDEIDSRLRLIKGYGGALLREK 106 (231)
Q Consensus 85 aDevd~~l~lIKGgGgAl~rEK 106 (231)
-|-.+.++ .-|+.|-+
T Consensus 159 WDI~~~nl------~eA~~ra~ 174 (537)
T 1vko_A 159 WDISDSNL------YEAMGRAK 174 (537)
T ss_dssp ECSSCCCT------THHHHHHT
T ss_pred CCCCCCCH------HHHHHHCC
T ss_conf 26999889------99998759
No 117
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A
Probab=21.04 E-value=40 Score=13.97 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=32.9
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-HHHHHHHHHHCCCCCCC
Q ss_conf 38997899887917899999999998732870489618-89999998731578655
Q gi|254781054|r 17 YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-SRNTENFCKIHHIPLHS 71 (231)
Q Consensus 17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-S~~t~~~a~~~gi~~~~ 71 (231)
..++++.||.||=.|..-+-+.. ..|.+..+.|. +..--..|.++++|.++
T Consensus 58 l~~~~~~iGaGTV~~~~~~~~a~----~aGa~FivSP~~~~~v~~~a~~~~i~~iP 109 (207)
T 2yw3_A 58 LRKSGLLLGAGTVRSPKEAEAAL----EAGAAFLVSPGLLEEVAALAQARGVPYLP 109 (207)
T ss_dssp HTTSSCEEEEESCCSHHHHHHHH----HHTCSEEEESSCCHHHHHHHHHHTCCEEE
T ss_pred HCCCCCEEEEHHCCCHHHHHHHH----HCCCCEEECCCCCHHHHHHHHHCCCCEEC
T ss_conf 54578589311205778999999----80999898588869999999962997517
No 118
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=20.37 E-value=42 Score=13.88 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=6.0
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 99999873157865
Q gi|254781054|r 57 NTENFCKIHHIPLH 70 (231)
Q Consensus 57 ~t~~~a~~~gi~~~ 70 (231)
.|..+++++|+|.-
T Consensus 68 ~T~~wL~~~gi~yd 81 (126)
T 1xpj_A 68 IITEWLDKHQVPYD 81 (126)
T ss_dssp HHHHHHHHTTCCCS
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999998299805
No 119
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=20.33 E-value=42 Score=13.88 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHC------CCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 87899999999999838------997899887917899999999998
Q gi|254781054|r 2 DALQMKRNAARRAIQYV------VDGMTLGMGTGSTAKEFMILLADK 42 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v------~~gmviGlGtGSTv~~~i~~L~~~ 42 (231)
|.+++=+.+|+...+.+ +..-.|+|-+|||...+.+.|++.
T Consensus 10 ~~~~~~~~~a~~i~~~l~~~i~~~~~~~i~lsGG~tp~~~y~~L~~~ 56 (232)
T 3lhi_A 10 NAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQK 56 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 99999999999999999999997799899988967699999999871
No 120
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase; 1.30A {Burkholderia SP}
Probab=20.30 E-value=42 Score=13.87 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=34.7
Q ss_pred HHHHHHH---HCCCCCEE-EEC-CCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf 9999998---38997899-887-91789999999999873287048961889999998731578
Q gi|254781054|r 10 AARRAIQ---YVVDGMTL-GMG-TGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231)
Q Consensus 10 ~a~~A~~---~v~~gmvi-GlG-tGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231)
.|..++. .+++|..| =+| +|..-.++++ +++ ..|.++.++..|......++++|..
T Consensus 132 tA~~~l~~~~~~~~g~~VlV~Ga~g~vG~~a~~-la~--~~g~~vi~~~~~~~~~~~~~~~Ga~ 192 (333)
T 1wly_A 132 TAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVP-WAR--HLGATVIGTVSTEEKAETARKLGCH 192 (333)
T ss_dssp HHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHH-HHH--HTTCEEEEEESSHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH-HHH--HCCCEEEEECCCHHHHHHHHHCCCC
T ss_conf 999999984096998999999996699999999-999--7699899977998999999976998
No 121
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17
Probab=20.03 E-value=43 Score=13.84 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=35.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCC--CCCCCCEEEEEECCHH
Q ss_conf 9978998879178999999999987328704896188999999873157865--5100880079863300
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH--SPEDVSSVDLSIDGFD 86 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~--~l~~~~~iDi~iDGaD 86 (231)
++-.+||+|+|++++.+.+.- ...++++|--...--..|+++ +|.. ...+-+++.+.++-|-
T Consensus 79 k~vLiiG~G~G~~~~~ll~~~-----~~~~i~~VEiDp~Vi~~a~~~-f~~~~~~~~~dprv~v~~~Da~ 142 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHP-----TVEKAVMVDIDGELVEVAKRH-MPEWHQGAFDDPRAVLVIDDAR 142 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTST-----TCCEEEEEESCHHHHHHHHHH-CHHHHTTGGGCTTEEEEESCHH
T ss_pred CEEEEECCCCHHHHHHHHHCC-----CCCEEEEECHHHHHHHHHHHC-CCCCCCCCCCCCEEEEEECHHH
T ss_conf 879998898379999998659-----967798740218999998751-8301345356870699972599
No 122
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=20.01 E-value=20 Score=15.89 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEEC
Q ss_conf 899999986322148985037722588636257888899820
Q gi|254781054|r 143 NKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAF 184 (231)
Q Consensus 143 ~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~ 184 (231)
....+...+.+..+|++.-.|.- ++++++.=|++++.
T Consensus 251 ~~i~~~a~k~~~~Lg~~g~~rvD-----f~~~~g~~yvlEvN 287 (322)
T 2fb9_A 251 ETVQELALKAYKVLGVRGMARVD-----FFLAEGELYLNELN 287 (322)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEE-----EEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEE-----EEEECCEEEEEEEE
T ss_conf 68999999999981996179999-----99999989999866
Done!