HHSEARCH alignment of GI: 254781054 and SCOP domain: d1t9ka_

Alignment
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Probab=95.87  E-value=0.059  Score=30.11  Aligned_cols=131  Identities=20%  Similarity=0.180  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEC--CCH-------HHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCC
Q ss_conf             99999999999838997899887--917-------899999999998732870489618--------8999999873157
Q gi|254781054|r    5 QMKRNAARRAIQYVVDGMTLGMG--TGS-------TAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHI   67 (231)
Q Consensus         5 ~~K~~~a~~A~~~v~~gmviGlG--tGS-------Tv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi   67 (231)
                      +..+..++.+.+++++|.+|=-=  ||+       |+...+....+   .|.+..++.+        +.-|+..+.+.||
T Consensus       129 ~~~~~Ig~~g~~lI~~g~~ILThcnsg~lAt~~~gta~~~~~~a~~---~g~~~~v~v~EsrP~~qG~~lta~~L~~~gi  205 (340)
T d1t9ka_         129 EVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVE---SGKRIRVFADETRPYLQGARLTAWELMKDGI  205 (340)
T ss_dssp             HHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHH---TTCCEEEEEECCTTTTHHHHTHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf             9999889998887348987998238751000220225667788763---5944799980489877427887778875598


Q ss_pred             CCCCCCC--------CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEE
Q ss_conf             8655100--------8800798633000476605883165777778799861022699962303513455-788726787
Q gi|254781054|r   68 PLHSPED--------VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEID  138 (231)
Q Consensus        68 ~~~~l~~--------~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~  138 (231)
                      |+.-..+        ...+|..+=|||-|..|+..+--=|-..+- -+-.....-|++++..+|+.+..- ...+|+|--
T Consensus       206 ~~t~I~Dsa~~~~m~~~~vd~VivGad~v~~nG~v~nkiGT~~~A-~~A~~~~vP~~V~a~~~k~~~~~~~~~~~~ie~r  284 (340)
T d1t9ka_         206 EVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEER  284 (340)
T ss_dssp             EEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBC
T ss_pred             CEEEEECCHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCHHHHH-HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             469972430666653055446875000103689887752589998-9998648747999522576877887470565356


Q ss_pred             E
Q ss_conf             2
Q gi|254781054|r  139 Q  139 (231)
Q Consensus       139 p  139 (231)
                      +
T Consensus       285 ~  285 (340)
T d1t9ka_         285 R  285 (340)
T ss_dssp             C
T ss_pred             C
T ss_conf             8


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Probable methylthioribose-1-phosphate isomerase TM0911
species: Thermotoga maritima [TaxId: 2336]