HHSEARCH alignment of GI: 254781054 and SCOP domain: d2gnpa1

Alignment
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=95.99  E-value=0.0052  Score=36.65  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC---------H----HHHHHHHHHC
Q ss_conf             78999999999998----38997899887917899999999998732870489618---------8----9999998731
Q gi|254781054|r    3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS---------S----RNTENFCKIH   65 (231)
Q Consensus         3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t---------S----~~t~~~a~~~   65 (231)
                      .+++++.+|+.|++    .++++++||+++|+|...++++|...  ...++++|+-         +    .-...+++.+
T Consensus        33 ~~~~~~~l~~~aA~~l~~~l~~~~~iGvswG~Tl~~~~~~l~~~--~~~~~~vv~l~Gg~~~~~~~~~~~~i~~~lA~~~  110 (262)
T d2gnpa1          33 PTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK--SVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKF  110 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC--CCSSCEEEESBCCCTTSCGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             67899999999999999847789889992788899999970765--6677459940577677766568999999999994


Q ss_pred             CCCCCCC
Q ss_conf             5786551
Q gi|254781054|r   66 HIPLHSP   72 (231)
Q Consensus        66 gi~~~~l   72 (231)
                      |-+...+
T Consensus       111 ~~~~~~l  117 (262)
T d2gnpa1         111 HGECTFM  117 (262)
T ss_dssp             TCEECCC
T ss_pred             CCCCCCC
T ss_conf             9970044


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Transcriptional regulator SP0247
species: Streptococcus pneumoniae [TaxId: 1313]