HHSEARCH alignment of GI: 254781054 and SCOP domain: d3efba1

Alignment

Probab=95.96  E-value=0.0044  Score=37.11  Aligned_cols=69  Identities=12%  Similarity=0.013  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------------H-HHHHHHHHH
Q ss_conf             78999999999998----38997899887917899999999998732870489618-------------8-999999873
Q gi|254781054|r    3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------------S-RNTENFCKI   64 (231)
Q Consensus         3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------------S-~~t~~~a~~   64 (231)
                      .++.++.+++.|++    +++++++||+++|+|+..+++.|.+.... .++.+|+.             + ..+...+.+
T Consensus        28 ~~~~~~~lg~aAA~~l~~~l~~~~~igvswG~T~~~~~~~l~~~~~~-~~~~~v~l~G~~~~~~~~~~~~~~~~~~~a~~  106 (255)
T d3efba1          28 EETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQS-RQLICVPIIGGPSGKLESRYHVNTLTYSAAAK  106 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCCSSC-CCCEEEESBCBCTTSSCGGGCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCC-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             06899999999999999867899889993868899999982200346-78169981467677757877878999999999


Q ss_pred             CCCCCCCC
Q ss_conf             15786551
Q gi|254781054|r   65 HHIPLHSP   72 (231)
Q Consensus        65 ~gi~~~~l   72 (231)
                      ++-+...+
T Consensus       107 ~~~~~~~l  114 (255)
T d3efba1         107 LKGESHLA  114 (255)
T ss_dssp             TTCEECCC
T ss_pred             HCCCCCCC
T ss_conf             28964477

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Sor-operon regulator SorC
species: Shigella flexneri [TaxId: 623]