Query         gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 231
No_of_seqs    127 out of 1329
Neff          5.5 
Searched_HMMs 13730
Date          Wed Jun  1 11:14:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781054.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1o8ba1 c.124.1.4 (A:23-126,A: 100.0       0       0  308.2   3.3  121   23-145     1-123 (124)
  2 d1uj4a1 c.124.1.4 (A:3-131,A:2 100.0 3.5E-30 2.5E-34  205.6  12.2  142    3-145     3-149 (151)
  3 d1lk5a1 c.124.1.4 (A:1-130,A:2 100.0 1.3E-29 9.8E-34  201.9   9.9  145    1-149     1-147 (149)
  4 d1m0sa1 c.124.1.4 (A:1-126,A:1 100.0   3E-28 2.2E-32  193.5  14.4  140    1-142     1-143 (147)
  5 d1lk5a2 d.58.40.1 (A:131-210)   99.9 4.3E-27 3.1E-31  186.3   7.7   79  129-211     2-80  (80)
  6 d1uj4a2 d.58.40.1 (A:132-205)   99.9   6E-25 4.4E-29  173.0   8.2   74  129-208     1-74  (74)
  7 d1o8ba2 d.58.40.1 (A:127-198)   99.9 5.5E-25   4E-29  173.2   7.3   72  129-210     1-72  (72)
  8 d1m0sa2 d.58.40.1 (A:127-198)   99.9 7.6E-24 5.5E-28  166.2   7.2   70  130-209     3-72  (72)
  9 d1vb5a_ c.124.1.5 (A:) Putativ  97.3  0.0044 3.2E-07   37.2  12.5  130    4-136    92-234 (274)
 10 d1t5oa_ c.124.1.5 (A:) Putativ  96.9  0.0096   7E-07   35.0  11.3  130    5-139   130-284 (340)
 11 d1k6da_ c.124.1.2 (A:) Acetate  96.7 0.00065 4.7E-08   42.3   3.6  118    7-127     4-195 (219)
 12 d1poib_ c.124.1.3 (B:) Glutaco  96.4  0.0036 2.6E-07   37.7   6.0  117    6-129     7-161 (260)
 13 d2gnpa1 c.124.1.8 (A:56-317) T  96.0  0.0052 3.8E-07   36.6   5.1   68    3-72     33-117 (262)
 14 d3efba1 c.124.1.8 (A:11-265) S  96.0  0.0044 3.2E-07   37.1   4.6   69    3-72     28-114 (255)
 15 d1t9ka_ c.124.1.5 (A:) Probabl  95.9   0.059 4.3E-06   30.1  10.7  131    5-139   129-285 (340)
 16 d2okga1 c.124.1.8 (A:89-338) C  95.7  0.0083 6.1E-07   35.4   5.1   68    4-72     33-116 (250)
 17 d2r5fa1 c.124.1.8 (A:59-316) T  95.4  0.0094 6.8E-07   35.1   4.5  170    3-206    31-224 (258)
 18 d2o0ma1 c.124.1.8 (A:95-341) T  95.0  0.0094 6.8E-07   35.1   3.6   69    4-72     27-112 (247)
 19 d2g39a1 c.124.1.2 (A:3-223) Ac  94.6   0.036 2.7E-06   31.4   5.6  122    6-129    11-172 (221)
 20 d1xr4a2 c.124.1.2 (A:237-505)   93.3    0.23 1.7E-05   26.4   7.8  110    2-118     6-170 (269)
 21 d2ahua1 c.124.1.3 (A:283-529)   93.1     0.2 1.5E-05   26.8   7.2  111    6-122     5-137 (247)
 22 d2a0ua1 c.124.1.5 (A:10-383) I  89.1    0.71 5.2E-05   23.4   9.2  105   31-139   188-309 (374)
 23 g1w2w.1 c.124.1.5 (A:,B:) Puta  88.7    0.76 5.5E-05   23.2  11.6  118   19-138   172-323 (402)
 24 d1ooya1 c.124.1.3 (A:261-481)   88.6    0.41   3E-05   24.9   5.2  108    6-122     2-144 (221)
 25 d2ahua2 c.124.1.2 (A:4-276) Pu  86.7    0.48 3.5E-05   24.5   4.6   48    8-55     12-66  (273)
 26 d1poia_ c.124.1.2 (A:) Glutaco  86.3    0.14   1E-05   27.7   1.7   46   77-126   171-216 (317)
 27 d1iz0a2 c.2.1.1 (A:99-269) Qui  81.8     1.2 8.4E-05   22.1   4.8   58    9-68     14-74  (171)
 28 d1ooya2 c.124.1.2 (A:1-242) Su  80.6     0.9 6.6E-05   22.8   3.9   41   11-53      7-50  (242)
 29 d1zcza2 c.97.1.4 (A:158-452) A  77.4     1.1 8.1E-05   22.2   3.6   10   24-33     71-80  (295)
 30 d1o5oa_ c.61.1.1 (A:) Uracil P  73.0     2.2 0.00016   20.4   4.2   16   26-41    135-150 (210)
 31 d1i1ga2 d.58.4.2 (A:62-141) Lp  72.5       3 0.00022   19.5   5.1   64  133-208     7-71  (80)
 32 d1v3va2 c.2.1.1 (A:113-294) Le  70.7     3.3 0.00024   19.3   6.9   59    8-68     14-76  (182)
 33 d1sg6a_ e.22.1.1 (A:) Dehydroq  52.3     7.1 0.00051   17.2   5.0   43   19-62    102-144 (389)
 34 d1nvmb1 c.2.1.3 (B:1-131,B:287  51.1     7.4 0.00054   17.1   4.2   88   22-123     5-105 (157)
 35 d1g8ma2 c.97.1.4 (A:201-593) A  50.2     4.8 0.00035   18.2   2.5   46   21-71    117-165 (393)
 36 d1pl8a2 c.2.1.1 (A:146-316) Ke  49.1     7.9 0.00058   16.9   5.7   58    9-69     13-74  (171)
 37 d1jr2a_ c.113.1.1 (A:) Uroporp  47.5     8.4 0.00061   16.7   6.5  139   12-154    47-209 (260)
 38 d2nzca1 d.58.18.14 (A:2-81) Hy  45.3     9.1 0.00066   16.5   4.4   62  141-206    13-74  (80)
 39 d2v8qa1 d.129.6.2 (A:396-548)   44.3     6.5 0.00047   17.4   2.4   50  132-189     9-74  (153)
 40 d1fsfa_ c.124.1.1 (A:) Glucosa  44.2     9.4 0.00069   16.4   3.3   44    2-45      8-58  (266)
 41 d1pqwa_ c.2.1.1 (A:) Putative   43.8     9.6  0.0007   16.4   6.9   59    8-69     10-73  (183)
 42 d1g8aa_ c.66.1.3 (A:) Fibrilla  41.7      10 0.00075   16.2   3.6   42   17-62     70-114 (227)
 43 d1yb5a2 c.2.1.1 (A:121-294) Qu  39.8      11  0.0008   16.0   6.1   58    8-68     13-75  (174)
 44 d1bd3a_ c.61.1.1 (A:) Uracil P  38.9      11 0.00083   15.9   6.3   12  191-202   179-190 (224)
 45 d2i6ga1 c.66.1.44 (A:1-198) Pu  38.8      11 0.00083   15.9   4.3   52   11-69     22-79  (198)
 46 d2qlva1 d.129.6.2 (A:460-630)   38.3     5.3 0.00039   18.0   1.2   56  127-190    47-132 (171)
 47 d1wd7a_ c.113.1.1 (A:) Probabl  36.9      11 0.00077   16.1   2.5  129   19-153    51-195 (254)
 48 d2o07a1 c.66.1.17 (A:16-300) S  35.3      11  0.0008   16.0   2.4   42   19-65     80-121 (285)
 49 d1xpja_ c.108.1.18 (A:) Hypoth  34.4      13 0.00098   15.5   5.6   16   57-72     68-83  (124)
 50 d1ujna_ e.22.1.1 (A:) Dehydroq  34.1      14 0.00099   15.4   4.5   45   17-62     82-126 (347)
 51 d1ne7a_ c.124.1.1 (A:) Glucosa  33.7      14   0.001   15.4   5.7   44    2-45      8-58  (281)
 52 d2qrda1 d.129.6.2 (A:450-576)   33.1     6.5 0.00048   17.4   1.0   49  132-188    11-89  (127)
 53 d1inla_ c.66.1.17 (A:) Spermid  32.4      14  0.0011   15.3   3.5   64   18-87     90-154 (295)
 54 d1y7pa2 d.58.18.12 (A:2-78) Hy  30.7      15  0.0011   15.1   7.1   68  136-207     5-73  (77)
 55 d1i5ea_ c.61.1.1 (A:) Uracil P  30.6      16  0.0011   15.1   4.6   16  188-203   160-175 (208)
 56 d1y0ba1 c.61.1.1 (A:1-191) Xan  30.3      12 0.00085   15.8   1.9   66    5-72      3-79  (191)
 57 d1vkoa1 c.2.1.3 (A:11-314,A:42  29.9      11 0.00078   16.1   1.6   80   22-107    58-153 (397)
 58 d1c4oa1 c.37.1.19 (A:2-409) Nu  29.6      16  0.0012   15.0   6.9  165   22-196    32-211 (408)
 59 d1iy9a_ c.66.1.17 (A:) Spermid  29.2      16  0.0012   14.9   2.6   42   19-65     77-118 (274)
 60 d1xj5a_ c.66.1.17 (A:) Spermid  27.4      18  0.0013   14.7   2.4   58   19-82     82-140 (290)
 61 d1nt2a_ c.66.1.3 (A:) Fibrilla  27.1      18  0.0013   14.7   4.4   39   17-60     53-94  (209)
 62 d1g8sa_ c.66.1.3 (A:) Fibrilla  26.4      18  0.0013   14.6   4.4   43   17-64     71-116 (230)
 63 d1xtta1 c.61.1.1 (A:2-216) Ura  25.8      19  0.0014   14.5   3.5   17  188-204   169-185 (215)
 64 d2nxca1 c.66.1.39 (A:1-254) Pr  25.6      19  0.0014   14.5   4.0   30   18-47     93-122 (254)
 65 d2g39a2 c.124.1.2 (A:224-497)   24.5      20  0.0015   14.4   2.5   36    7-42     10-55  (274)
 66 d1o8ca2 c.2.1.1 (A:116-192) Hy  24.4      20  0.0015   14.4   3.4   46   18-66     29-76  (77)
 67 d1rrma_ e.22.1.2 (A:) Lactalde  24.3      20  0.0015   14.4   5.0   85   24-113    11-111 (385)
 68 d1jq5a_ e.22.1.2 (A:) Glycerol  23.9      20  0.0015   14.3   5.5   38   18-58     84-121 (366)
 69 d1gpja2 c.2.1.7 (A:144-302) Gl  22.7      22  0.0016   14.2   9.0   55   17-74     21-77  (159)
 70 d1yqga2 c.2.1.6 (A:1-152) Pyrr  22.1      22  0.0016   14.1   6.4   59   22-82      1-62  (152)
 71 d1xr4a1 c.124.1.2 (A:1-236) Pu  20.6      24  0.0017   13.9   5.2  111   12-127    47-207 (236)
 72 d1uira_ c.66.1.17 (A:) Spermid  20.3      24  0.0018   13.9   4.1   64   18-87     78-143 (312)

No 1  
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=308.19  Aligned_cols=121  Identities=37%  Similarity=0.509  Sum_probs=111.8

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHH
Q ss_conf             99887917899999999998732870489618899999987315786551008800798633000476605883165777
Q gi|254781054|r   23 TLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGAL  102 (231)
Q Consensus        23 viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl  102 (231)
                      +||||||||+.+||++|+++.  +....+||||.+|+.+|+++|||+.++++++++|+|||||||||+++||||||||||
T Consensus         1 VvGlGtGSTv~~~i~~L~~~~--~~~~~~V~tS~~t~~~~~~~gi~~~~l~~~~~iDi~iDGADevd~~l~lIKGGGgal   78 (124)
T d1o8ba1           1 IVGVGTGSTAAHFIDALGTMK--GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAAL   78 (124)
T ss_dssp             CEEECCSCC-----------------CCEEESCCC------------CCGGGCSCEEEEEECCSEECTTSCEECCCCC-H
T ss_pred             CEEECCHHHHHHHHHHHHHHH--CCCCEEECCHHHHHHHHHHCCCCCCCHHHCCCEEEEECCHHHCCCCCEEHHHCCCCC
T ss_conf             988645699999999998503--776458747579999999808876671017831698415232277740523277412


Q ss_pred             HHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEE--EECCHHHH
Q ss_conf             77879986102269996230351345578872678--72575899
Q gi|254781054|r  103 LREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEI--DQFGVNKT  145 (231)
Q Consensus       103 ~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV--~p~~~~~v  145 (231)
                      +|||++|++|++||||+|+||+|++||.||+||||  +|+||+++
T Consensus        79 ~rEKivA~~A~~~i~I~DesK~V~~Lg~~~~PVevev~p~a~~~V  123 (124)
T d1o8ba1          79 TREKIIASVAEKFICIADASKQVDILANRGADVALIGTPDGVKTI  123 (124)
T ss_dssp             HHHHHHHHHEEEEEEEEEGGGBCSSBCSSCCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEECCCEECCCCCCCCCEEEEECCCCHHHC
T ss_conf             278899985683799983872615368878767999764613311


No 2  
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]}
Probab=99.97  E-value=3.5e-30  Score=205.56  Aligned_cols=142  Identities=46%  Similarity=0.650  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf             78999999999998389978998879178999999999987328--7048961889999998731578655100880079
Q gi|254781054|r    3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL   80 (231)
Q Consensus         3 ~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~--~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi   80 (231)
                      .+..|+.+|++|++||+|||+|+||+|||+.+++++|+++....  .++..++++......+...++....+.+ -++|+
T Consensus         3 ~~~~K~~IA~~A~~~I~dg~~I~LdsGTT~~~la~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~l~~-~~~D~   81 (151)
T d1uj4a1           3 LESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDL   81 (151)
T ss_dssp             THHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCT-TCEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCCCCCC-CEECE
T ss_conf             79999999999997689999999896189999999998877540442134214326589998627742212234-30058


Q ss_pred             EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC---CCCCCEEEEECCHHHH
Q ss_conf             8633000476605883165777778799861022699962303513455---7887267872575899
Q gi|254781054|r   81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG---RGMLPIEIDQFGVNKT  145 (231)
Q Consensus        81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg---~~plPVEV~p~~~~~v  145 (231)
                      +|+|||.+|+++++.+++++.+..||.++.+|+++|+++|+||+|++|+   .+|+||||+|+|++.+
T Consensus        82 aF~g~~gvd~~~g~~~~~~~e~~~kk~~~~~A~~~ilLaD~SKlv~~L~~~~~~p~piev~p~~~~~v  149 (151)
T d1uj4a1          82 AIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLLFVGMATRALVAGPFGVEEL  149 (151)
T ss_dssp             EEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSEECSCCSEEEEEETTEEEEE
T ss_pred             EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCEECCCCCCCCCCEEEEECCCHHHHC
T ss_conf             99716612577671038889998877898736849999978840220244899977699835657413


No 3  
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.96  E-value=1.3e-29  Score=201.90  Aligned_cols=145  Identities=39%  Similarity=0.630  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf             9878999999999998389978998879178999999999987328--70489618899999987315786551008800
Q gi|254781054|r    1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSV   78 (231)
Q Consensus         1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~--~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~i   78 (231)
                      ||++|+|+.+|++|+++|+|||+|+||+|||+.+++++|.++....  .++..++++......+...|....++.+..++
T Consensus         1 mn~~E~K~~IA~~Aa~lI~dg~~I~ldsGTT~~~la~~L~~~~~~~v~t~~~~i~~~~~~~~~~~~~G~~~~~~~~~~~~   80 (149)
T d1lk5a1           1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAI   80 (149)
T ss_dssp             CCHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf             98799999999999976899999998886089999999977533553234143202036678888628522302104642


Q ss_pred             EEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf             79863300047660588316577777879986102269996230351345578872678725758999999
Q gi|254781054|r   79 DLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSAL  149 (231)
Q Consensus        79 Di~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l  149 (231)
                      |++|||||.+|+++.+.+++++.+..+|.++++|+++|+++|+||+|.+|+    ||||+|.+|..+.+.|
T Consensus        81 d~~f~g~~~id~~~g~~~~~~~~~~~kk~m~~~A~~~illaDsSK~v~~L~----~iev~~~~~~~~~~~i  147 (149)
T d1lk5a1          81 DVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLD----IADIVIVGTREGVKKL  147 (149)
T ss_dssp             EEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTS----CCCEEEEEETTEEEEE
T ss_pred             CEEEEECCEECCCCCEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC----CCCCCEEEHHHHHHHH
T ss_conf             389975777768673247979999998999986095999996871306679----9578810159999972


No 4  
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.96  E-value=3e-28  Score=193.55  Aligned_cols=140  Identities=37%  Similarity=0.490  Sum_probs=126.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf             98789999999999983899789988791789999999999873287048961889999998731578655100880079
Q gi|254781054|r    1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL   80 (231)
Q Consensus         1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi   80 (231)
                      |||.|.|+.+|++|++||+||++|+||+|||+.+++++|.++  ....+...+++..+.......|.......+.-++|+
T Consensus         1 m~~~e~K~~IA~~A~~lI~dg~~I~LdsGTT~~~la~~L~~~--~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~D~   78 (147)
T d1m0sa1           1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVAASKESEELLRKQGIEVFNANDVSSLDI   78 (147)
T ss_dssp             CCHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTT--GGGSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH--CCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCE
T ss_conf             986999999999999768999999988863699999998751--564366123047769999864873000133455557


Q ss_pred             EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCC-CCCE--EEEECCH
Q ss_conf             863300047660588316577777879986102269996230351345578-8726--7872575
Q gi|254781054|r   81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRG-MLPI--EIDQFGV  142 (231)
Q Consensus        81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~-plPV--EV~p~~~  142 (231)
                      +|+|||.||++..+.+++++++..+|+++++|+++|+++|+||+|+.|+.| |+||  |+.|.+.
T Consensus        79 aF~g~~gi~~~~glt~~~~~~~~~~k~~~~~a~~~ivlaDsSKlv~~l~~~~~i~v~i~~~~~~~  143 (147)
T d1m0sa1          79 YVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLFALRGADVVIVGTPEGA  143 (147)
T ss_dssp             EEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTECTTCCSEEEEEETTEE
T ss_pred             EEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEEHHHH
T ss_conf             98347655688616638899999988999847809999628814141489997007899806767


No 5  
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.93  E-value=4.3e-27  Score=186.35  Aligned_cols=79  Identities=38%  Similarity=0.579  Sum_probs=75.0

Q ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECC
Q ss_conf             57887267872575899999986322148985037722588636257888899820798689899999962799686648
Q gi|254781054|r  129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHG  208 (231)
Q Consensus       129 g~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~G  208 (231)
                      -+|||||||+||+|.++.+.|++    +|+++++|++.+++|||+|||||||+|++|+++.||.+++.+|++||||||||
T Consensus         2 ~KfPlPVEV~p~~~~~v~~~l~~----~g~~~~lR~~~~~~gp~iTDnGN~I~D~~~~~i~~p~~l~~~L~~ipGVVe~G   77 (80)
T d1lk5a2           2 QKMPVPIEVIPQAWKAIIEELSI----FNAKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENG   77 (80)
T ss_dssp             SSCCEEEEECGGGHHHHHHHGGG----GTCEEEECBCSSSSSBCCCTTSCEEEEEECSCCSCHHHHHHHHHTSTTEEEES
T ss_pred             CCCCCCEEECHHHHHHHHHHHHH----CCCCCEEECCCCCCCCEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf             85875789857289999999998----09983172046788876825999798788898899999999997899989517


Q ss_pred             EEC
Q ss_conf             024
Q gi|254781054|r  209 LFI  211 (231)
Q Consensus       209 lF~  211 (231)
                      ||.
T Consensus        78 LFa   80 (80)
T d1lk5a2          78 IFA   80 (80)
T ss_dssp             EEC
T ss_pred             CCC
T ss_conf             469


No 6  
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Probab=99.91  E-value=6e-25  Score=173.00  Aligned_cols=74  Identities=45%  Similarity=0.807  Sum_probs=69.0

Q ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECC
Q ss_conf             57887267872575899999986322148985037722588636257888899820798689899999962799686648
Q gi|254781054|r  129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHG  208 (231)
Q Consensus       129 g~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~G  208 (231)
                      |+|||||||+||+|.++.+.|++    +|+++++|+  ++++||+|||||||+||+|+.+.||.+|+.+|++||||||||
T Consensus         1 G~FPlPVEV~pf~~~~v~~~l~~----lg~~~~lR~--~~~~p~iTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~G   74 (74)
T d1uj4a2           1 GRGPVPVEIVPFGYRATLKAIAD----LGGEPELRM--DGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETG   74 (74)
T ss_dssp             CSSCEEEEECSTTHHHHHHHHHH----TTCCEEECE--ETTEECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEES
T ss_pred             CCCCCCEEECHHHHHHHHHHHHH----HCCCCEEEE--CCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEECCC
T ss_conf             99871689827289999999998----499746965--599507951997899887899599999999997699876349


No 7  
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]}
Probab=99.91  E-value=5.5e-25  Score=173.25  Aligned_cols=72  Identities=33%  Similarity=0.466  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECC
Q ss_conf             57887267872575899999986322148985037722588636257888899820798689899999962799686648
Q gi|254781054|r  129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHG  208 (231)
Q Consensus       129 g~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~G  208 (231)
                      |+|||||||+||+|.++.+.|++    +|+++++|+      ||+|||||||+||+|.++.||.+|+.+|++||||||||
T Consensus         1 G~FPlPvEV~p~~~~~v~~~l~~----~g~~~~~R~------~~iTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~G   70 (72)
T d1o8ba2           1 GKFPLPVEVIPMARSAVARQLVK----LGGRPEYRQ------GVVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVG   70 (72)
T ss_dssp             TSSCEEEEECGGGHHHHHHHHHH----TTCEEEECT------TCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEES
T ss_pred             CCCCCCEEEEHHHHHHHHHHHHH----CCCCCCCCC------CEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECC
T ss_conf             99875889826589999999999----389720176------36946998799887899799999999986799987058


Q ss_pred             EE
Q ss_conf             02
Q gi|254781054|r  209 LF  210 (231)
Q Consensus       209 lF  210 (231)
                      ||
T Consensus        71 LF   72 (72)
T d1o8ba2          71 LF   72 (72)
T ss_dssp             EE
T ss_pred             CC
T ss_conf             79


No 8  
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.89  E-value=7.6e-24  Score=166.17  Aligned_cols=70  Identities=31%  Similarity=0.393  Sum_probs=65.6

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCE
Q ss_conf             78872678725758999999863221489850377225886362578888998207986898999999627996866480
Q gi|254781054|r  130 RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGL  209 (231)
Q Consensus       130 ~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~Gl  209 (231)
                      +|||||||+||+|.++.++|++    +|+++++|+      ||+|||||||+||+|..+.||.+|+.+|++|||||||||
T Consensus         3 kFPlPVEV~pf~~~~v~~~l~~----lg~~~~lR~------~~iTDnGN~IlD~~~~~i~dp~~l~~~L~~IpGVVE~GL   72 (72)
T d1m0sa2           3 TFPLPVEVIPMARSQVGRKLAA----LGGSPEYRE------GVVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTNGI   72 (72)
T ss_dssp             SSCEEEEECGGGHHHHHHHHHH----TTCEEEECT------TCCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEESE
T ss_pred             CCCEEEEECHHHHHHHHHHHHH----HCCCCCCCC------CCEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEECCCC
T ss_conf             8878089817289999999999----389862259------838209988997888986999999999987998872488


No 9  
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=97.31  E-value=0.0044  Score=37.15  Aligned_cols=130  Identities=21%  Similarity=0.194  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-----HHHHHHHHHHCCCCCCCCCCC--
Q ss_conf             89999999999983899789-9887917899999999998732870489618-----899999987315786551008--
Q gi|254781054|r    4 LQMKRNAARRAIQYVVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIPS-----SRNTENFCKIHHIPLHSPEDV--   75 (231)
Q Consensus         4 ~~~K~~~a~~A~~~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-----S~~t~~~a~~~gi~~~~l~~~--   75 (231)
                      ++..+..++.+.++|++|++ +=.|--+||..++....++. ..+++.+.-|     +.+....+.+.|||+.-..+.  
T Consensus        92 ~~a~~~i~~~~~~~i~~g~~ILT~~~S~tv~~~l~~a~~~g-k~~~V~v~EsrP~~eG~~la~~L~~~GI~vtlI~Dsa~  170 (274)
T d1vb5a_          92 EEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERK-KRFKVILTESSPDYEGLHLARELEFSGIEFEVITDAQM  170 (274)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTT-CCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGH
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHH
T ss_conf             99999999986776599988998184389999999999869-97289996787655509999999874995178440489


Q ss_pred             ----CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCCCCCCCEE
Q ss_conf             ----8007986330004766058831657777787998-610226999623035134557887267
Q gi|254781054|r   76 ----SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLGRGMLPIE  136 (231)
Q Consensus        76 ----~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg~~plPVE  136 (231)
                          .+.|+.+=|||-|..|+..+---|-..+-  ++| ....-|+++++.+|+.+.+-...+|+|
T Consensus       171 ~~~m~~~d~VivGAd~v~~nG~v~nkiGT~~~A--~~Ak~~~vP~~V~a~~~k~~~~~~~~~~~~~  234 (274)
T d1vb5a_         171 GLFCREASIAIVGADMITKDGYVVNKAGTYLLA--LACHENAIPFYVAAETYKFHPTLKSGDVMLM  234 (274)
T ss_dssp             HHHHTTCSEEEECCSEECTTSCEEEETTHHHHH--HHHHHTTCCEEEECCGGGBCSSCCGGGCCCC
T ss_pred             HHHHHCCCEEEEEEEEEECCCCEEECCCHHHHH--HHHHHCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf             999640887999545995389877545055899--9999749985473144566777789980403


No 10 
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=96.94  E-value=0.0096  Score=35.01  Aligned_cols=130  Identities=19%  Similarity=0.040  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEECC--CH-------HHHHHHHHHHHHHHCCCEEEE--EEC------HHHHHHHHHHCCC
Q ss_conf             999999999998389978998879--17-------899999999998732870489--618------8999999873157
Q gi|254781054|r    5 QMKRNAARRAIQYVVDGMTLGMGT--GS-------TAKEFMILLADKIANGFRVQV--IPS------SRNTENFCKIHHI   67 (231)
Q Consensus         5 ~~K~~~a~~A~~~v~~gmviGlGt--GS-------Tv~~~i~~L~~~~~~~~~i~~--v~t------S~~t~~~a~~~gi   67 (231)
                      +..+..++.+.++|++|++|--=.  |+       |+...+....+   .|.+.++  .-|      +..|...+.+.||
T Consensus       130 ~a~~~I~~~g~~~I~dg~~ILThcnsg~lat~~~gta~~~i~~a~~---~gk~~~V~v~EsrP~~qG~rl~a~~L~~~gi  206 (340)
T d1t5oa_         130 ERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVE---QGKEIRVIACETRPLNQGSRLTCWELMEDGI  206 (340)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHH---TTCCCEEEEECCTTTTHHHHTHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH---CCCCCEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf             9999999998875179988999258852112236567877778630---7964058997426766750789999986578


Q ss_pred             CCCCCCCC--------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEE
Q ss_conf             86551008--------8007986330004766058831657777787998610226999623035134557887267872
Q gi|254781054|r   68 PLHSPEDV--------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQ  139 (231)
Q Consensus        68 ~~~~l~~~--------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p  139 (231)
                      |+.-..+.        ..+|..|=|||-|..|+-+-|=|-..+.  -.--....-|++.+..+|+........+|+|--|
T Consensus       207 ~~t~i~dsa~~~~m~~~~vd~VivGad~v~~nG~~nkiGT~~~A--~~Ak~~~vP~~V~~~~~k~~~~~~~~~i~ie~~~  284 (340)
T d1t5oa_         207 DVTLITDSMVGIVMQKGMVDKVIVGADRIVRDAVFNKIGTYTVS--VVAKHHNIPFYVAAPKATFDWERTAKDVVIEERP  284 (340)
T ss_dssp             CEEEECGGGHHHHHHTTCCSEEEECCSEEETTEEEEETTHHHHH--HHHHHTTCCEEEECCGGGBCTTCCGGGCCCCBCC
T ss_pred             CCEEEECHHHHHHHHCCCCCEEEECHHEEEHHCCCCCCCHHHHH--HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             85797122578886416654576322105311251110588999--9999818857999514554656774550323588


No 11 
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]}
Probab=96.68  E-value=0.00065  Score=42.29  Aligned_cols=118  Identities=20%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHCCCCCEEEECC---CHHHHHHHHHHHHHHHCCCEE----------------------EE----EECHHH
Q ss_conf             9999999998389978998879---178999999999987328704----------------------89----618899
Q gi|254781054|r    7 KRNAARRAIQYVVDGMTLGMGT---GSTAKEFMILLADKIANGFRV----------------------QV----IPSSRN   57 (231)
Q Consensus         7 K~~~a~~A~~~v~~gmviGlGt---GSTv~~~i~~L~~~~~~~~~i----------------------~~----v~tS~~   57 (231)
                      |..-+++|+++|+|||+|++|.   ..+-..++.+|.++....+.+                      ..    ...+..
T Consensus         4 K~~s~~eAv~~IkdGd~V~~gGf~~~g~P~al~~aL~~~~~k~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (219)
T d1k6da_           4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPE   83 (219)
T ss_dssp             SEECHHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHHTCCSEEEECSBCCCTTSTTHHHHHTTCEEEEEESBCTTCHH
T ss_pred             CCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEECCCCCCCHH
T ss_conf             40639999965999899998682675879999999998476776025457874731013455404344225365456756


Q ss_pred             HHHHHHHCCCCCCCCC---------------------------------------------CCCEEEEEECCHHCCCCCC
Q ss_conf             9999873157865510---------------------------------------------0880079863300047660
Q gi|254781054|r   58 TENFCKIHHIPLHSPE---------------------------------------------DVSSVDLSIDGFDEIDSRL   92 (231)
Q Consensus        58 t~~~a~~~gi~~~~l~---------------------------------------------~~~~iDi~iDGaDevd~~l   92 (231)
                      .+...++-.+......                                             ...++|++|=-|-..|.++
T Consensus        84 ~~~~~~~g~ie~~~~~~g~~~~~~ra~a~g~p~~~~~~~~Gt~~~~~~~~~~~~g~~~~~~~a~~~DVAiI~a~~aD~~G  163 (219)
T d1k6da_          84 TGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLG  163 (219)
T ss_dssp             HHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEEECCCCEEEEEEEEEEEETTC
T ss_pred             HHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCEECCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf             78876269846998233478999998647998505403436512268732334787325640346888999850578998


Q ss_pred             EEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCC
Q ss_conf             58831657777787998610226999623035134
Q gi|254781054|r   93 RLIKGYGGALLREKIIAHAASRFIVIGDESKRVDF  127 (231)
Q Consensus        93 ~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~  127 (231)
                      |+.=.+.+..+.+ ..|.+|++.|+-|++  .|+.
T Consensus       164 N~~~~~~~~~~~~-~~a~Aa~~VIv~ve~--iv~~  195 (219)
T d1k6da_         164 NLTYQLSARNFNP-LIALAADITLVEPDE--LVET  195 (219)
T ss_dssp             CEECCHHHHTTHH-HHHHHEEEEEEEEEE--EECT
T ss_pred             CEEECCCCCCCHH-HHHHHCCCEEEEEEE--EECC
T ss_conf             6566155444179-999859979999967--8737


No 12 
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]}
Probab=96.40  E-value=0.0036  Score=37.66  Aligned_cols=117  Identities=18%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCEE-------EEEE----CHHHHHHHHHHCC-C-----
Q ss_conf             999999999983899789988791789999999999873-28704-------8961----8899999987315-7-----
Q gi|254781054|r    6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRV-------QVIP----SSRNTENFCKIHH-I-----   67 (231)
Q Consensus         6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i-------~~v~----tS~~t~~~a~~~g-i-----   67 (231)
                      .+++.|..|++.+++|+++-+|.|.-.  ..-.|+++.. ....+       -..|    .|......+.... +     
T Consensus         7 ~~E~ma~~aArel~dg~~v~~GiGiP~--~a~~lA~~~~~pd~~l~~e~G~~g~~p~~~~~s~~d~~~~~~~~~~~~~~~   84 (260)
T d1poib_           7 NKEMQAVTIAKQIKNGQVVTVGTGLPL--IGASVAKRVYAPDCHIIVESGLMDCSPVEVPRSVGDLRFMAHCGCIWPNVR   84 (260)
T ss_dssp             HHHHHHHHHHTTCCTTCEEECCSSHHH--HHHHHHHHTTCTTCEEEETTTEEEECCSSCCSSTTCHHHHTSEEEECCHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCHHH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             999999999985679999998673789--999998861399759997775327778777755565244235531267411


Q ss_pred             ----CCCCCCCCCEEEEEECCHHCCCCCCEE--------------EECCCHHHHHHHHHHHHHCCEEEEEEHH--HCCCC
Q ss_conf             ----865510088007986330004766058--------------8316577777879986102269996230--35134
Q gi|254781054|r   68 ----PLHSPEDVSSVDLSIDGFDEIDSRLRL--------------IKGYGGALLREKIIAHAASRFIVIGDES--KRVDF  127 (231)
Q Consensus        68 ----~~~~l~~~~~iDi~iDGaDevd~~l~l--------------IKGgGgAl~rEKiva~~a~~~I~i~D~s--K~v~~  127 (231)
                          .+.++-.-.++|++|=|+=|||..+|+              +-|.|||.-    +++.|+++|++ .++  |+|+.
T Consensus        85 ~~~~~~F~~~~~G~~d~~fLG~~QVD~~GNvN~s~iG~~~~p~~rl~G~GGa~d----i~~~a~~ii~~-~h~~r~fV~~  159 (260)
T d1poib_          85 FVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG----IATYSNTIIMM-QHEKRRFMNK  159 (260)
T ss_dssp             HHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH----HHHHSCEEEEC-CCCTTTBCSS
T ss_pred             CCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCH----HHHCCCEEEEE-CCCCCCCCCC
T ss_conf             244888899856886469734200583223332022566677756668876113----55157457984-4676435642


Q ss_pred             CC
Q ss_conf             55
Q gi|254781054|r  128 LG  129 (231)
Q Consensus       128 Lg  129 (231)
                      +.
T Consensus       160 vd  161 (260)
T d1poib_         160 ID  161 (260)
T ss_dssp             CS
T ss_pred             CC
T ss_conf             33


No 13 
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=95.99  E-value=0.0052  Score=36.65  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC---------H----HHHHHHHHHC
Q ss_conf             78999999999998----38997899887917899999999998732870489618---------8----9999998731
Q gi|254781054|r    3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS---------S----RNTENFCKIH   65 (231)
Q Consensus         3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t---------S----~~t~~~a~~~   65 (231)
                      .+++++.+|+.|++    .++++++||+++|+|...++++|...  ...++++|+-         +    .-...+++.+
T Consensus        33 ~~~~~~~l~~~aA~~l~~~l~~~~~iGvswG~Tl~~~~~~l~~~--~~~~~~vv~l~Gg~~~~~~~~~~~~i~~~lA~~~  110 (262)
T d2gnpa1          33 PTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK--SVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKF  110 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC--CCSSCEEEESBCCCTTSCGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             67899999999999999847789889992788899999970765--6677459940577677766568999999999994


Q ss_pred             CCCCCCC
Q ss_conf             5786551
Q gi|254781054|r   66 HIPLHSP   72 (231)
Q Consensus        66 gi~~~~l   72 (231)
                      |-+...+
T Consensus       111 ~~~~~~l  117 (262)
T d2gnpa1         111 HGECTFM  117 (262)
T ss_dssp             TCEECCC
T ss_pred             CCCCCCC
T ss_conf             9970044


No 14 
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]}
Probab=95.96  E-value=0.0044  Score=37.11  Aligned_cols=69  Identities=12%  Similarity=0.013  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------------H-HHHHHHHHH
Q ss_conf             78999999999998----38997899887917899999999998732870489618-------------8-999999873
Q gi|254781054|r    3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------------S-RNTENFCKI   64 (231)
Q Consensus         3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------------S-~~t~~~a~~   64 (231)
                      .++.++.+++.|++    +++++++||+++|+|+..+++.|.+.... .++.+|+.             + ..+...+.+
T Consensus        28 ~~~~~~~lg~aAA~~l~~~l~~~~~igvswG~T~~~~~~~l~~~~~~-~~~~~v~l~G~~~~~~~~~~~~~~~~~~~a~~  106 (255)
T d3efba1          28 EETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQS-RQLICVPIIGGPSGKLESRYHVNTLTYSAAAK  106 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCCSSC-CCCEEEESBCBCTTSSCGGGCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCC-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             06899999999999999867899889993868899999982200346-78169981467677757877878999999999


Q ss_pred             CCCCCCCC
Q ss_conf             15786551
Q gi|254781054|r   65 HHIPLHSP   72 (231)
Q Consensus        65 ~gi~~~~l   72 (231)
                      ++-+...+
T Consensus       107 ~~~~~~~l  114 (255)
T d3efba1         107 LKGESHLA  114 (255)
T ss_dssp             TTCEECCC
T ss_pred             HCCCCCCC
T ss_conf             28964477


No 15 
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Probab=95.87  E-value=0.059  Score=30.11  Aligned_cols=131  Identities=20%  Similarity=0.180  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEC--CCH-------HHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCC
Q ss_conf             99999999999838997899887--917-------899999999998732870489618--------8999999873157
Q gi|254781054|r    5 QMKRNAARRAIQYVVDGMTLGMG--TGS-------TAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHI   67 (231)
Q Consensus         5 ~~K~~~a~~A~~~v~~gmviGlG--tGS-------Tv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi   67 (231)
                      +..+..++.+.+++++|.+|=-=  ||+       |+...+....+   .|.+..++.+        +.-|+..+.+.||
T Consensus       129 ~~~~~Ig~~g~~lI~~g~~ILThcnsg~lAt~~~gta~~~~~~a~~---~g~~~~v~v~EsrP~~qG~~lta~~L~~~gi  205 (340)
T d1t9ka_         129 EVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVE---SGKRIRVFADETRPYLQGARLTAWELMKDGI  205 (340)
T ss_dssp             HHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHH---TTCCEEEEEECCTTTTHHHHTHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf             9999889998887348987998238751000220225667788763---5944799980489877427887778875598


Q ss_pred             CCCCCCC--------CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEE
Q ss_conf             8655100--------8800798633000476605883165777778799861022699962303513455-788726787
Q gi|254781054|r   68 PLHSPED--------VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEID  138 (231)
Q Consensus        68 ~~~~l~~--------~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~  138 (231)
                      |+.-..+        ...+|..+=|||-|..|+..+--=|-..+- -+-.....-|++++..+|+.+..- ...+|+|--
T Consensus       206 ~~t~I~Dsa~~~~m~~~~vd~VivGad~v~~nG~v~nkiGT~~~A-~~A~~~~vP~~V~a~~~k~~~~~~~~~~~~ie~r  284 (340)
T d1t9ka_         206 EVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEER  284 (340)
T ss_dssp             EEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBC
T ss_pred             CEEEEECCHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCHHHHH-HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             469972430666653055446875000103689887752589998-9998648747999522576877887470565356


Q ss_pred             E
Q ss_conf             2
Q gi|254781054|r  139 Q  139 (231)
Q Consensus       139 p  139 (231)
                      +
T Consensus       285 ~  285 (340)
T d1t9ka_         285 R  285 (340)
T ss_dssp             C
T ss_pred             C
T ss_conf             8


No 16 
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]}
Probab=95.70  E-value=0.0083  Score=35.40  Aligned_cols=68  Identities=9%  Similarity=0.104  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEE------------CHHHHHHHHHHCCC
Q ss_conf             8999999999998----3899789988791789999999999873287048961------------88999999873157
Q gi|254781054|r    4 LQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIP------------SSRNTENFCKIHHI   67 (231)
Q Consensus         4 ~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~------------tS~~t~~~a~~~gi   67 (231)
                      ++.++.+|+.|++    +++++++||+++|+|+..+++.|.... ...++.+|+            ++.-....+.++|-
T Consensus        33 ~~~~~~l~~aaA~~L~~~l~~~~~igvswG~T~~~~~~~l~~~~-~~~~~~~V~l~G~~~~~~~~~~~~i~~~la~~~~~  111 (250)
T d2okga1          33 PWVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDS-KNRELLFVPARGGLGEDVKNQANTICAHMAEKASG  111 (250)
T ss_dssp             THHHHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCT-TCCEEEEEESEEECC---CCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             69999999999999998667998899958789999999841105-68872899821788877675999999999987299


Q ss_pred             CCCCC
Q ss_conf             86551
Q gi|254781054|r   68 PLHSP   72 (231)
Q Consensus        68 ~~~~l   72 (231)
                      +...+
T Consensus       112 ~~~~l  116 (250)
T d2okga1         112 TYRLL  116 (250)
T ss_dssp             EECCC
T ss_pred             CEEEE
T ss_conf             65644


No 17 
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]}
Probab=95.39  E-value=0.0094  Score=35.08  Aligned_cols=170  Identities=12%  Similarity=0.106  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHH----HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEEC------------HHHHHHHHHHC
Q ss_conf             78999999999998----3899789988-7917899999999998732870489618------------89999998731
Q gi|254781054|r    3 ALQMKRNAARRAIQ----YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPS------------SRNTENFCKIH   65 (231)
Q Consensus         3 ~~~~K~~~a~~A~~----~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~t------------S~~t~~~a~~~   65 (231)
                      .++..+.+++.|++    +++++++||+ |.|+|+..+++++........++++||.            ...+..+|+++
T Consensus        31 ~~~~~~~v~~~aA~~L~~~l~~~~~igv~~wG~Tl~~~~~~l~~~~~~~~~~~vV~l~G~~~~~~~~~~~~i~~~lA~~~  110 (258)
T d2r5fa1          31 EESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLL  110 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             57999999999999999862659879998368089999987163556678805995678878777758999999999873


Q ss_pred             CCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHH----HHHHCCEEEEEEHHHCCCCCCCCCCCEEE-EEC
Q ss_conf             5786551008800798633000476605883165777778799----86102269996230351345578872678-725
Q gi|254781054|r   66 HIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKII----AHAASRFIVIGDESKRVDFLGRGMLPIEI-DQF  140 (231)
Q Consensus        66 gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiv----a~~a~~~I~i~D~sK~v~~Lg~~plPVEV-~p~  140 (231)
                      |-+...+    ...+++|...+-+           .+..|+.+    ..+.+--+.++       -+|.. -+.-. .+.
T Consensus       111 ~~~~~~l----~aP~~~~s~~~~~-----------~l~~~~~i~~vl~~~~~~dial~-------GIG~~-~~~~~~~~~  167 (258)
T d2r5fa1         111 NCPAFLL----PSQSIEQSVESKQ-----------RIVEMEEVKEVLHRFDSITLAIV-------GIGEL-EPSQLLRNS  167 (258)
T ss_dssp             TSCEECC----CCC---------------------CCHHHHHHHHHHHHTTTCCEEEE-------CCEEC-C--------
T ss_pred             CCCEEEC----CCCCCCCCHHHHH-----------HHHHCHHHHHHHHHHHCCCEEEE-------ECCCC-CCCCEEECC
T ss_conf             9936703----6722368999999-----------99858469999999825999999-------23788-765411115


Q ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCC-C-CCCHHHHHHHHHCCCCEEE
Q ss_conf             7589999998632214898503772258863625788889982079-8-6898999999627996866
Q gi|254781054|r  141 GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFG-F-IPDPQIISGELCNIPGVIE  206 (231)
Q Consensus       141 ~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~-~-i~dp~~le~~L~~IpGVVe  206 (231)
                      +.......++.+ ...|.-.++      .+.|+..+|+.+- ..+. . +.-  .++ +|+++|-||.
T Consensus       168 ~~~~~~~~~~~l-~~~gAvGdi------~~~f~d~~G~~v~-~~~~~r~i~i--~l~-~l~~i~~~I~  224 (258)
T d2r5fa1         168 GNYYTEDMLRVL-AERGAVGDI------CLRYFDAQGKPVL-EEDEEFVVSM--GLG-KLRSINRVLG  224 (258)
T ss_dssp             -----------C-TTTTCCEEE------TTEEECTTSCBC--------CEEC--CHH-HHHTSSEEEE
T ss_pred             CCCCCHHHHHHH-HHCCEEEHH------HHHHCCCCCCCCC-CCCCCCEEEC--CHH-HHCCCCCEEE
T ss_conf             788999999999-988902527------6434167899976-6654314316--878-9656885899


No 18 
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]}
Probab=95.04  E-value=0.0094  Score=35.09  Aligned_cols=69  Identities=7%  Similarity=0.011  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHH----HCCCCC-EEEECCCHHHHHHHHHHHHHHHCCCEEEEEE------------CHHHHHHHHHHCC
Q ss_conf             8999999999998----389978-9988791789999999999873287048961------------8899999987315
Q gi|254781054|r    4 LQMKRNAARRAIQ----YVVDGM-TLGMGTGSTAKEFMILLADKIANGFRVQVIP------------SSRNTENFCKIHH   66 (231)
Q Consensus         4 ~~~K~~~a~~A~~----~v~~gm-viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~------------tS~~t~~~a~~~g   66 (231)
                      ++..+.+|+.|.+    .+++|+ +||+++|||...+++.|........++++|+            +......++...+
T Consensus        27 ~~~~~~l~~~aa~~L~~~l~~~~~~ig~s~G~T~~~~~~~l~~~~~~~~~~~~v~l~G~~~~~~~~~~~~~~~~la~~~~  106 (247)
T d2o0ma1          27 KKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTG  106 (247)
T ss_dssp             THHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             99999999999999998701498699996777999999971402577674389944657888877689999999997619


Q ss_pred             CCCCCC
Q ss_conf             786551
Q gi|254781054|r   67 IPLHSP   72 (231)
Q Consensus        67 i~~~~l   72 (231)
                      .+...+
T Consensus       107 ~~~~~l  112 (247)
T d2o0ma1         107 GNYRAL  112 (247)
T ss_dssp             CEECCC
T ss_pred             CCHHEE
T ss_conf             970004


No 19 
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=94.57  E-value=0.036  Score=31.42  Aligned_cols=122  Identities=19%  Similarity=0.208  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEC--CCH-HHHHHHHHHHHHHHC-CCEEEEE-----------------------E--CHH
Q ss_conf             9999999999838997899887--917-899999999998732-8704896-----------------------1--889
Q gi|254781054|r    6 MKRNAARRAIQYVVDGMTLGMG--TGS-TAKEFMILLADKIAN-GFRVQVI-----------------------P--SSR   56 (231)
Q Consensus         6 ~K~~~a~~A~~~v~~gmviGlG--tGS-Tv~~~i~~L~~~~~~-~~~i~~v-----------------------~--tS~   56 (231)
                      .|..-|.+|+.+|++|+.|++|  ||+ +-..++++|+++.++ .+.+...                       +  ++.
T Consensus        11 ~Kl~saeeAv~~Ik~G~~V~~gGf~~ag~P~~l~~aLa~r~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   90 (221)
T d2g39a1          11 DKVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDS   90 (221)
T ss_dssp             GGBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCH
T ss_pred             HHCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCH
T ss_conf             62788999997489969999878887778489999999987518844899853666753322121148546451066598


Q ss_pred             HHHHHHHHCCCCCCC---------CCC--CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCC
Q ss_conf             999998731578655---------100--880079863300047660588316577777879986102269996230351
Q gi|254781054|r   57 NTENFCKIHHIPLHS---------PED--VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRV  125 (231)
Q Consensus        57 ~t~~~a~~~gi~~~~---------l~~--~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v  125 (231)
                      ..+.+..+-.+...+         +.+  ...+|+++=-+=..|.++|+.=|-  +.-..+-.+.+|++.|+-+.+.--.
T Consensus        91 ~~Rk~i~~G~~~~~p~~ls~~~~~~r~g~~~~iDVaii~vs~~De~G~~~~g~--s~~~~~~~~~~A~~VIvEVN~~~P~  168 (221)
T d2g39a1          91 TLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTT--SVGNSASFAIFAKQVIVEINLAHST  168 (221)
T ss_dssp             HHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCS--BCBTHHHHHHHSSEEEEEEETTSCG
T ss_pred             HHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEC--CCCHHHHHHHHCCEEEEEECCCCCC
T ss_conf             99999877976899664777799998168889848999986378981497606--5162999998689899998899996


Q ss_pred             CCCC
Q ss_conf             3455
Q gi|254781054|r  126 DFLG  129 (231)
Q Consensus       126 ~~Lg  129 (231)
                      ..+|
T Consensus       169 ~~~g  172 (221)
T d2g39a1         169 NLEG  172 (221)
T ss_dssp             GGTT
T ss_pred             CCCC
T ss_conf             5578


No 20 
>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}
Probab=93.33  E-value=0.23  Score=26.43  Aligned_cols=110  Identities=20%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHHHHC------CCCCEEEECCCHHHHHHHHHHHHHHH-CCCEEEE----EECHHHHHHHHHHCCC---
Q ss_conf             87899999999999838------99789988791789999999999873-2870489----6188999999873157---
Q gi|254781054|r    2 DALQMKRNAARRAIQYV------VDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQV----IPSSRNTENFCKIHHI---   67 (231)
Q Consensus         2 ~~~~~K~~~a~~A~~~v------~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i~~----v~tS~~t~~~a~~~gi---   67 (231)
                      ......++.|+.++++|      +||.++=+|-|+.-.....+|.++.+ .+.+...    ++.+..   .+.+.|.   
T Consensus         6 t~~P~~~~Ia~~~A~~I~~~~~i~DG~tlQlGiG~ip~AV~~~L~~~~~dlgih~e~~~ggitd~~~---~L~~~G~i~~   82 (269)
T d1xr4a2           6 SSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITGTMV---DLHEKGLIKA   82 (269)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECHHHH---HHHHTTSBSC
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHH---HCCCCCCEEE
T ss_conf             8986999999999998764576889878996759899999998676454664588787056376301---0260555440


Q ss_pred             -------------------CCCC------------CCCCCEEEEEECCHHCCCCCCE----------EEECCCHHHHHHH
Q ss_conf             -------------------8655------------1008800798633000476605----------8831657777787
Q gi|254781054|r   68 -------------------PLHS------------PEDVSSVDLSIDGFDEIDSRLR----------LIKGYGGALLREK  106 (231)
Q Consensus        68 -------------------~~~~------------l~~~~~iDi~iDGaDevd~~l~----------lIKGgGgAl~rEK  106 (231)
                                         +-..            ...++++|++|-||=|||..+|          ++-|.||..-.  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~y~n~~~~i~~~~~ldvsInsAlEVDl~Gnvn~~~~~~g~~~sG~GG~~Df--  160 (269)
T d1xr4a2          83 LLDTQSFDGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDT--  160 (269)
T ss_dssp             EEEEEECSHHHHHHHHHCTTEEECCHHHHTCTTCSCCGGGGCSEEEECCSEECTTCCEECSBCTTSCBCSBCTTHHHH--
T ss_pred             CCCCEEECCHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHH--
T ss_conf             356346423658788739984798431004863666534872189851004125786578872598502797657787--


Q ss_pred             HHHHHHCCEEEE
Q ss_conf             998610226999
Q gi|254781054|r  107 IIAHAASRFIVI  118 (231)
Q Consensus       107 iva~~a~~~I~i  118 (231)
                        +..|+.-++.
T Consensus       161 --~rGA~~si~~  170 (269)
T d1xr4a2         161 --AAGADLTIIT  170 (269)
T ss_dssp             --HHHSSEEEEE
T ss_pred             --HCCCEEEEEE
T ss_conf             --4585268874


No 21 
>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=93.12  E-value=0.2  Score=26.77  Aligned_cols=111  Identities=21%  Similarity=0.221  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH--HCCCE-------EEEEECHHHHHHHHHHCC--C---CCCC
Q ss_conf             99999999998389978998879178999999999987--32870-------489618899999987315--7---8655
Q gi|254781054|r    6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKI--ANGFR-------VQVIPSSRNTENFCKIHH--I---PLHS   71 (231)
Q Consensus         6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~--~~~~~-------i~~v~tS~~t~~~a~~~g--i---~~~~   71 (231)
                      .++..|+.|+.+++||+++=+|.|--  ..+-.++++.  .....       +...|.+...--.+....  +   ...+
T Consensus         5 ~~~~Ia~raA~el~dG~~v~lGiGiP--~~v~~~a~~~~~~~~v~~~~E~G~~gg~~~~~~~~~~~~~~~~~~~~~~~f~   82 (247)
T d2ahua1           5 QRKLVARRALFEMRKGAVGNVGVGIA--DGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQFD   82 (247)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEECSSTT--TTHHHHHHHHTCGGGSEEBCTTSEESCBCC-----CCCBSCSEECCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCHH--HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCEEEECCCCEEE
T ss_conf             89999999998678999999766689--9999999763778751686637515881256653033304236734601034


Q ss_pred             CCCCCEEEEEECCHHCCCCCCEE--------EECCCHHHHHHHHHHHHHCCEEEEEEHH
Q ss_conf             10088007986330004766058--------8316577777879986102269996230
Q gi|254781054|r   72 PEDVSSVDLSIDGFDEIDSRLRL--------IKGYGGALLREKIIAHAASRFIVIGDES  122 (231)
Q Consensus        72 l~~~~~iDi~iDGaDevd~~l~l--------IKGgGgAl~rEKiva~~a~~~I~i~D~s  122 (231)
                      .-...++|++|=||=|||..+|+        +.|-||+.--    ++.|++.+++...+
T Consensus        83 ~~~~g~~dv~~lga~QVD~~GnvN~s~iG~~~~G~GG~~D~----~~gA~~~i~~~~~~  137 (247)
T d2ahua1          83 FYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDI----SATSKKIIFCGTLT  137 (247)
T ss_dssp             HHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHHHH----HTTCSEEEEECCSE
T ss_pred             EEECCCEEEEEECHHHCCCCCCCCHHCCCCCCCCCCCCCHH----HCCCCEEEECCCCC
T ss_conf             57349735999553443801154401028865685443304----30764389824632


No 22 
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]}
Probab=89.11  E-value=0.71  Score=23.41  Aligned_cols=105  Identities=19%  Similarity=0.078  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEE--C------HHHHHHHHHHCCCCCCCCCCC--------CEEEEEECCHHCCCCCCEE
Q ss_conf             89999999999873287048961--8------899999987315786551008--------8007986330004766058
Q gi|254781054|r   31 TAKEFMILLADKIANGFRVQVIP--S------SRNTENFCKIHHIPLHSPEDV--------SSVDLSIDGFDEIDSRLRL   94 (231)
Q Consensus        31 Tv~~~i~~L~~~~~~~~~i~~v~--t------S~~t~~~a~~~gi~~~~l~~~--------~~iDi~iDGaDevd~~l~l   94 (231)
                      |+...+....+   .|....++.  |      +.-|...+.+.|||+.-..+.        .++|..|=|||-|..|+.+
T Consensus       188 tal~~i~~a~~---~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~Dsa~~~~m~~~~v~~VivGad~v~~nG~v  264 (374)
T d2a0ua1         188 TALGVVRQLFY---DGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDT  264 (374)
T ss_dssp             SHHHHHHHHHH---TTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCE
T ss_pred             HHHHHHHHHHH---CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCEEEEEECCEEEEECCCE
T ss_conf             24677678997---698617998046433464689999998616771899545256662056425898523189846978


Q ss_pred             EECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEEE
Q ss_conf             83165777778799861022699962303513455-7887267872
Q gi|254781054|r   95 IKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEIDQ  139 (231)
Q Consensus        95 IKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~p  139 (231)
                      +--=|-..+= -.--....-|++.+..+|+..... ...+|+|--+
T Consensus       265 ~nkiGT~~~A-~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~  309 (374)
T d2a0ua1         265 ANKIGTYNLA-VSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEERE  309 (374)
T ss_dssp             EEETTHHHHH-HHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCC
T ss_pred             EECCCHHHHH-HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             8624649999-99997499889991156427677997756466789


No 23 
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate isomerase Ypr118W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=88.70  E-value=0.76  Score=23.23  Aligned_cols=118  Identities=20%  Similarity=0.130  Sum_probs=72.5

Q ss_pred             CCCCEEEEC--CCH-------HHHHHHHHHHHHH-----HCCCEEEEEEC-H-------HHHHHHHHHCCCCCCCCCCCC
Q ss_conf             997899887--917-------8999999999987-----32870489618-8-------999999873157865510088
Q gi|254781054|r   19 VDGMTLGMG--TGS-------TAKEFMILLADKI-----ANGFRVQVIPS-S-------RNTENFCKIHHIPLHSPEDVS   76 (231)
Q Consensus        19 ~~gmviGlG--tGS-------Tv~~~i~~L~~~~-----~~~~~i~~v~t-S-------~~t~~~a~~~gi~~~~l~~~~   76 (231)
                      ++|++|=--  ||+       |+.-.++.+.++.     +.+++.+++.+ |       ..|+..+.+.|||+.-..+..
T Consensus       172 ~dg~~ILThCnsg~Lat~~~GTAl~vi~~~~~~~l~~a~~~~k~f~V~v~EsRP~~qG~rl~a~~L~~~gI~~t~i~dsa  251 (402)
T g1w2w.1         172 KDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKCPRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSS  251 (402)
T ss_dssp             CSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHHHHCCCEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGG
T ss_pred             CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECHH
T ss_conf             87632576316543211121468899999987555456642844799995788744217888899986587708974056


Q ss_pred             ----------EEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCC-CCCCCEEEE
Q ss_conf             ----------007986330004766058831657777787998-61022699962303513455-788726787
Q gi|254781054|r   77 ----------SVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLG-RGMLPIEID  138 (231)
Q Consensus        77 ----------~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~  138 (231)
                                .+|..|=|||-|-.|+.++-==|-+.+=  ++| ....-|++.+..+|+....- ..-+|+|--
T Consensus       252 ~~~~m~~~~~~vd~V~vGAd~i~~nG~v~nkiGT~~~A--~~Ak~~~vPv~V~a~~~k~~~~~~~~~~i~iE~r  323 (402)
T g1w2w.1         252 IAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLA--VICKQFGIKFFVVAPKTTIDNVTETGDDIIVEER  323 (402)
T ss_dssp             HHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHH--HHHHHHTCEEEEECCGGGBCSSCCSGGGCCCCBC
T ss_pred             HHHHHHHCCCCCCEEEECCCEECCCCCEEEHHHHHHHH--HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             89998634756436997132330688776668788899--9999829966998146653767899561346147


No 24 
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=88.60  E-value=0.41  Score=24.90  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHH---------HHHHHH--HHCCC------C
Q ss_conf             999999999983899789988791789999999999873287048961889---------999998--73157------8
Q gi|254781054|r    6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSR---------NTENFC--KIHHI------P   68 (231)
Q Consensus         6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~---------~t~~~a--~~~gi------~   68 (231)
                      ..+..|+.|+++++||.++=+|.| --......|    ++..++.....+.         ......  ...+.      +
T Consensus         2 v~e~Ia~~aA~~i~DG~~v~~GiG-iP~~va~~l----~~~~~~~l~~E~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (221)
T d1ooya1           2 VRERIIKRAALEFEDGMYANLGIG-IPLLASNFI----SPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLP   76 (221)
T ss_dssp             HHHHHHHHHGGGCCTTEEEEECTT-HHHHHGGGS----CTTSCEEEEETTTEEEECCCCCGGGCCTTCBCTTSCBCCEEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCC-HHHHHHHHH----HHCCCCEEEECCCEEECCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf             899999999986789999997748-899999875----026760478537523214334446534553102232143364


Q ss_pred             ---CC------CCCCCCEEEEEECCHHCCCCCCEE---------EECCCHHHHHHHHHHHHHCCEEEEEEHH
Q ss_conf             ---65------510088007986330004766058---------8316577777879986102269996230
Q gi|254781054|r   69 ---LH------SPEDVSSVDLSIDGFDEIDSRLRL---------IKGYGGALLREKIIAHAASRFIVIGDES  122 (231)
Q Consensus        69 ---~~------~l~~~~~iDi~iDGaDevd~~l~l---------IKGgGgAl~rEKiva~~a~~~I~i~D~s  122 (231)
                         ..      ..-....+|++|-|+-|||..+|.         +-|.||+.-    ++..+++.+++.-++
T Consensus        77 ~~~~~~~~~~~~~~~~g~~dva~~ga~qvD~~G~in~~~~p~~~~~G~GG~~d----~~~~a~~~~~~~~~~  144 (221)
T d1ooya1          77 GASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMD----LVSSAKTKVVVTMEH  144 (221)
T ss_dssp             EEEECCHHHHHHHHHTTCSSEEEECCSEEETTCCEECSCCSSSCCCCCTTHHH----HTCCTTSEEEEECCS
T ss_pred             HHHHCCCCCCHHHHHCCCCCEEEECHHHHCCHHEEEEEECCCCCCCCCCCCHH----HHHCCCCEEEEEEEC
T ss_conf             34313444443465457764698354561511005545128720257344202----533268417997301


No 25 
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=86.68  E-value=0.48  Score=24.46  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHCCCCCEEEECCCH----HHHHHHHHHHHHHH-C-C-CEEEEEECH
Q ss_conf             99999999838997899887917----89999999999873-2-8-704896188
Q gi|254781054|r    8 RNAARRAIQYVVDGMTLGMGTGS----TAKEFMILLADKIA-N-G-FRVQVIPSS   55 (231)
Q Consensus         8 ~~~a~~A~~~v~~gmviGlGtGS----Tv~~~i~~L~~~~~-~-~-~~i~~v~tS   55 (231)
                      -+.+++|+++|+|||+|++|...    +...++.+|.++-+ + + .+++++..+
T Consensus        12 v~S~~eAv~~I~DG~ti~igGf~~~~~~P~~li~al~~r~~~~~~~kdLtli~~~   66 (273)
T d2ahua2          12 VLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPT   66 (273)
T ss_dssp             BCCHHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESS
T ss_pred             EEEHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             6359999831999899999362677769899999999988722898761899446


No 26 
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]}
Probab=86.27  E-value=0.14  Score=27.75  Aligned_cols=46  Identities=24%  Similarity=0.159  Sum_probs=29.1

Q ss_pred             EEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf             00798633000476605883165777778799861022699962303513
Q gi|254781054|r   77 SVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD  126 (231)
Q Consensus        77 ~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~  126 (231)
                      ++|++|==|...|..+|+.--| .. ..-...|.+|++.|+.|++  .|+
T Consensus       171 ~~DvAlIha~~AD~~GNv~~~g-~~-~~~~~~A~Aa~~vIV~vE~--IV~  216 (317)
T d1poia_         171 QVDVAIIHAQQASPDGTVRIWG-GK-FQDVDIAEAAKYTIVTCEE--IIS  216 (317)
T ss_dssp             CCSEEEEEEEEECTTCCEECCS-CC-TTHHHHHHHSSEEEEEEEE--ECC
T ss_pred             CCCEEEEEECCCCCCCCEEEEC-CC-CCCHHHHHCCCCEEEEEEE--EEE
T ss_conf             8879999802228997189976-67-7899998659951999999--985


No 27 
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}
Probab=81.80  E-value=1.2  Score=22.08  Aligned_cols=58  Identities=14%  Similarity=0.044  Sum_probs=37.1

Q ss_pred             HHHHHHHH--HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf             99999998--3899789988-791789999999999873287048961889999998731578
Q gi|254781054|r    9 NAARRAIQ--YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP   68 (231)
Q Consensus         9 ~~a~~A~~--~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~   68 (231)
                      ..|..|++  .+++|..|-+ |.++.+..+.-.+++.  .|.++.++.+|..-...++++|..
T Consensus        14 ~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~--~G~~vi~~~~~~~~~~~~~~lGa~   74 (171)
T d1iz0a2          14 LTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARA--MGLRVLAAASRPEKLALPLALGAE   74 (171)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSGGGSHHHHHTTCS
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999985999999899995664321332211112--333332233554111111234440


No 28 
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=80.57  E-value=0.9  Score=22.75  Aligned_cols=41  Identities=15%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             HHHHHHHCCCCCEEEECCCHH---HHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             999998389978998879178---9999999999873287048961
Q gi|254781054|r   11 ARRAIQYVVDGMTLGMGTGST---AKEFMILLADKIANGFRVQVIP   53 (231)
Q Consensus        11 a~~A~~~v~~gmviGlGtGST---v~~~i~~L~~~~~~~~~i~~v~   53 (231)
                      |..|+++|+||++|++|+-..   -..++.+|.++-..  +++.+.
T Consensus         7 a~EAv~~I~DG~~i~~gGf~~~~~P~ali~el~r~~~~--~Lt~i~   50 (242)
T d1ooya2           7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVK--ELTAVS   50 (242)
T ss_dssp             HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHHCCC--SEEEEE
T ss_pred             HHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCC--CCEEEE
T ss_conf             99998149994999987754737899999999974999--878996


No 29 
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=77.39  E-value=1.1  Score=22.18  Aligned_cols=10  Identities=20%  Similarity=0.302  Sum_probs=4.0

Q ss_pred             EEECCCHHHH
Q ss_conf             9887917899
Q gi|254781054|r   24 LGMGTGSTAK   33 (231)
Q Consensus        24 iGlGtGSTv~   33 (231)
                      -|..+|.|..
T Consensus        71 CGvA~~~~~~   80 (295)
T d1zcza2          71 CGAAIGEDKV   80 (295)
T ss_dssp             EEEEECSCHH
T ss_pred             CCCCCCCCCC
T ss_conf             6655355521


No 30 
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=73.05  E-value=2.2  Score=20.37  Aligned_cols=16  Identities=19%  Similarity=0.412  Sum_probs=7.5

Q ss_pred             ECCCHHHHHHHHHHHH
Q ss_conf             8791789999999999
Q gi|254781054|r   26 MGTGSTAKEFMILLAD   41 (231)
Q Consensus        26 lGtGSTv~~~i~~L~~   41 (231)
                      |.||+|+..+|+.|.+
T Consensus       135 lATG~s~~~ai~~L~~  150 (210)
T d1o5oa_         135 LATGVSSIKAIEILKE  150 (210)
T ss_dssp             ESSSHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHH
T ss_conf             5568628999999985


No 31 
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=72.46  E-value=3  Score=19.51  Aligned_cols=64  Identities=16%  Similarity=0.064  Sum_probs=48.2

Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHH-HHHHHCCCCEEECC
Q ss_conf             72678725758999999863221489850377225886362578888998207986898999-99962799686648
Q gi|254781054|r  133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQII-SGELCNIPGVIEHG  208 (231)
Q Consensus       133 lPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~l-e~~L~~IpGVVe~G  208 (231)
                      +=|++.|.....+.++|.++       |+++..     ..+|-..++++-+...+..+..++ ...|..+|||..+-
T Consensus         7 i~i~v~~~~~~~v~~~l~~~-------peV~~~-----~~vtG~~D~~~~v~~~d~~~l~~~l~~~i~~~~gV~~~~   71 (80)
T d1i1ga2           7 TGVDTKPEKLFEVAEKLKEY-------DFVKEL-----YLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVC   71 (80)
T ss_dssp             EEEEECGGGHHHHHHHHHHS-------TTEEEE-----CCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHCC-------CCEEEE-----EEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             99998717599999998769-------998689-----989799989999997999999999986641599977999


No 32 
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}
Probab=70.71  E-value=3.3  Score=19.27  Aligned_cols=59  Identities=15%  Similarity=0.058  Sum_probs=41.3

Q ss_pred             HHHHHHHHH---HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf             999999998---3899789988-791789999999999873287048961889999998731578
Q gi|254781054|r    8 RNAARRAIQ---YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP   68 (231)
Q Consensus         8 ~~~a~~A~~---~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~   68 (231)
                      -..|..|+.   .+++|+.|=+ |.++-+-.+.-.|++.  .|.++.++.+|..-...++++|-.
T Consensus        14 glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~--~Ga~vi~~~~~~~~~~~~~~~Ga~   76 (182)
T d1v3va2          14 GLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQIGFD   76 (182)
T ss_dssp             HHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             999999999986999998899996788436999999870--698799967877899999752001


No 33 
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]}
Probab=52.34  E-value=7.1  Score=17.20  Aligned_cols=43  Identities=16%  Similarity=0.194  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf             99789988791789999999999873287048961889999998
Q gi|254781054|r   19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC   62 (231)
Q Consensus        19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a   62 (231)
                      ++..+||+|+|++.... ...|.....|.....|||+.-+..-+
T Consensus       102 r~d~IiaiGGG~v~D~a-k~~A~~y~rgi~~i~vPTtlla~~Da  144 (389)
T d1sg6a_         102 RDTVVIALGGGVIGDLT-GFVASTYMRGVRYVQVPTTLLAMVDS  144 (389)
T ss_dssp             TTCEEEEEESHHHHHHH-HHHHHHGGGCCEEEEEECSHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHH-HHHHHHHHCCCCEEEECCCHHCCCCC
T ss_conf             77569996563477889-99999985587636731402125665


No 34 
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}
Probab=51.10  E-value=7.4  Score=17.08  Aligned_cols=88  Identities=13%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             CEEE-ECCCHHHHH-HHHHHHHHHHCCCEEEEEECH-H--HHHHHHHHCCCCCCCC------C--CCCEEEEEECCHHCC
Q ss_conf             8998-879178999-999999987328704896188-9--9999987315786551------0--088007986330004
Q gi|254781054|r   22 MTLG-MGTGSTAKE-FMILLADKIANGFRVQVIPSS-R--NTENFCKIHHIPLHSP------E--DVSSVDLSIDGFDEI   88 (231)
Q Consensus        22 mviG-lGtGSTv~~-~i~~L~~~~~~~~~i~~v~tS-~--~t~~~a~~~gi~~~~l------~--~~~~iDi~iDGaDev   88 (231)
                      +.+| +|||..... +++.|.  ......+..+.++ .  .....++++|++...-      +  +...+|+.|+-.   
T Consensus         5 irvaIIGaG~ig~~~~~~~l~--~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~AT---   79 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLR--NAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDAT---   79 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH--HCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECS---
T ss_pred             CEEEEECCCHHHHHHHHHHHH--HCCCCEEEEEEECCHHCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECC---
T ss_conf             679998685999999999996--198655999985533203103566539740005615665024555468899827---


Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHH
Q ss_conf             76605883165777778799861022699962303
Q gi|254781054|r   89 DSRLRLIKGYGGALLREKIIAHAASRFIVIGDESK  123 (231)
Q Consensus        89 d~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK  123 (231)
                       |        -|.|.........++.=+.+.|.|.
T Consensus        80 -p--------ag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          80 -S--------ASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             -C--------HHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             -C--------CHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf             -8--------4358881888999875988998146


No 35 
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=50.24  E-value=4.8  Score=18.23  Aligned_cols=46  Identities=11%  Similarity=0.019  Sum_probs=22.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHH---HHHHHHHHCCCCCCC
Q ss_conf             789988791789999999999873287048961889---999998731578655
Q gi|254781054|r   21 GMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSR---NTENFCKIHHIPLHS   71 (231)
Q Consensus        21 gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~---~t~~~a~~~gi~~~~   71 (231)
                      |-+|++-.-=+..     +++.+.+.+.=.++++++   .-+.+.++-++.++.
T Consensus       117 GGIIa~N~~vd~~-----~A~~i~~~F~EvIIAP~f~~eAleiL~~KKNlRll~  165 (393)
T d1g8ma2         117 GDFIALSDICDVP-----TAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCV  165 (393)
T ss_dssp             TEEEEESSCBCHH-----HHHHHHTSCEEEEEESCBCHHHHHHHHHGGGGTCEE
T ss_pred             CEEEEECCCCCCC-----HHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCCCHHH
T ss_conf             5078861553321-----024322202010011345567788874254521343


No 36 
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.13  E-value=7.9  Score=16.89  Aligned_cols=58  Identities=21%  Similarity=0.113  Sum_probs=38.2

Q ss_pred             HHHHHHHH--HCCCCCE-EEECCCHHHHHHHHHHHHHHHCCC-EEEEEECHHHHHHHHHHCCCCC
Q ss_conf             99999998--3899789-988791789999999999873287-0489618899999987315786
Q gi|254781054|r    9 NAARRAIQ--YVVDGMT-LGMGTGSTAKEFMILLADKIANGF-RVQVIPSSRNTENFCKIHHIPL   69 (231)
Q Consensus         9 ~~a~~A~~--~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~-~i~~v~tS~~t~~~a~~~gi~~   69 (231)
                      .+|.+|++  .+++|.. +=+|.|..--+.++.+..   .|. ++.++.++......|+++|...
T Consensus        13 a~a~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~---~G~~~Vi~~d~~~~rl~~a~~~Ga~~   74 (171)
T d1pl8a2          13 SVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKA---MGAAQVVVTDLSATRLSKAKEIGADL   74 (171)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHCCCC
T ss_conf             999999998698999989998888418999999987---39825874069989999999959750


No 37 
>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.51  E-value=8.4  Score=16.74  Aligned_cols=139  Identities=8%  Similarity=-0.130  Sum_probs=68.7

Q ss_pred             HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH----------CCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf             999983899789988791789999999999873----------2870489618899999987315786551008800798
Q gi|254781054|r   12 RRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA----------NGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLS   81 (231)
Q Consensus        12 ~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~----------~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~   81 (231)
                      ..++..+++-..+=+-|...|..|.+.|.+.-.          .-.++.+.+-...|+..++++|+...-......    
T Consensus        47 ~~~l~~~~~~d~iifTS~~aV~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~~~~~~~~s----  122 (260)
T d1jr2a_          47 SEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNA----  122 (260)
T ss_dssp             HHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCSCCSCSSH----
T ss_pred             HHHHHCHHHCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCCCH----
T ss_conf             9987283116689991734899999987762764122244443211584999857999999985997520565307----


Q ss_pred             ECCHHCC-----C-CCCEEEECCCH-HHHHHHHHHHHHCCEEEEEEHHHCCCCCCC-------CCCCEEEEECCHHHHHH
Q ss_conf             6330004-----7-66058831657-777787998610226999623035134557-------88726787257589999
Q gi|254781054|r   82 IDGFDEI-----D-SRLRLIKGYGG-ALLREKIIAHAASRFIVIGDESKRVDFLGR-------GMLPIEIDQFGVNKTLS  147 (231)
Q Consensus        82 iDGaDev-----d-~~l~lIKGgGg-Al~rEKiva~~a~~~I~i~D~sK~v~~Lg~-------~plPVEV~p~~~~~v~~  147 (231)
                      -+-++.+     . ...-.+.|.++ -.+.+.+......-.-+++=++...+.+..       -.-++.++.|......+
T Consensus       123 ~~l~~~~~~~~~~~~~il~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~i~f~S~s~v~  202 (260)
T d1jr2a_         123 EKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLT  202 (260)
T ss_dssp             HHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHH
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             88899876402567549996255530678888885498506998644544645368899998752476178626989999


Q ss_pred             HHHHHHH
Q ss_conf             9986322
Q gi|254781054|r  148 ALKEVAS  154 (231)
Q Consensus       148 ~l~~~~~  154 (231)
                      .+-+.+.
T Consensus       203 ~~~~~~~  209 (260)
T d1jr2a_         203 YSLKHIQ  209 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999998


No 38 
>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}
Probab=45.27  E-value=9.1  Score=16.52  Aligned_cols=62  Identities=19%  Similarity=0.119  Sum_probs=42.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             758999999863221489850377225886362578888998207986898999999627996866
Q gi|254781054|r  141 GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIE  206 (231)
Q Consensus       141 ~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe  206 (231)
                      ........+++++..+|.--.-|++-    |+...|=++|.=.-..+-.....|..+|.++|||=-
T Consensus        13 ~r~~~a~kVn~iL~~yg~~I~gRmGi----p~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~v   74 (80)
T d2nzca1          13 DREKAYRQVNELLHNFSEDILLRVGY----PVREENMAIIFLVLKTDNDTIGALSGKLGQISGVRV   74 (80)
T ss_dssp             SCHHHHHHHHHHHHHTGGGEEEEEEE----EEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEEE
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCC----CCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCEEE
T ss_conf             82776899999998778878985468----705469259999998888799998876369998899


No 39 
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=44.27  E-value=6.5  Score=17.42  Aligned_cols=50  Identities=24%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHCCCCC------EEEEEECCC----------CCEECCCCCEEEEECCCCCC
Q ss_conf             87267872575899999986322148985------037722588----------63625788889982079868
Q gi|254781054|r  132 MLPIEIDQFGVNKTLSALKEVASCFGLNE------ELRLRRNGS----------GLFVSDGGNYIVDAFFGFIP  189 (231)
Q Consensus       132 plPVEV~p~~~~~v~~~l~~~~~~~G~~~------~lR~~~~~~----------gp~iTDnGN~IlD~~~~~i~  189 (231)
                      .=|.||    ...+++++++    +|+.|      .+|.|....          .-|-+|.+||++|......+
T Consensus         9 s~P~dI----M~eVyrALk~----L~~eWk~~~~y~ir~R~~~~~~~~~~Km~lQLYqv~~~~YLLDfk~i~~~   74 (153)
T d2v8qa1           9 SRPNDI----MAEVCRAIKQ----LDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDDE   74 (153)
T ss_dssp             SCHHHH----HHHHHHHHHH----TTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSSSCEEEEEEEECCC
T ss_pred             CCHHHH----HHHHHHHHHH----CCCEEEECCCEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEEEECCCC
T ss_conf             997999----9999999998----69818756863899987789898535899988997489568886525862


No 40 
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]}
Probab=44.19  E-value=9.4  Score=16.42  Aligned_cols=44  Identities=25%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             CHHHHHHHHHHHHHHHCCC-----C--CEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf             8789999999999983899-----7--899887917899999999998732
Q gi|254781054|r    2 DALQMKRNAARRAIQYVVD-----G--MTLGMGTGSTAKEFMILLADKIAN   45 (231)
Q Consensus         2 ~~~~~K~~~a~~A~~~v~~-----g--mviGlGtGSTv~~~i~~L~~~~~~   45 (231)
                      |.+++=+.+|+.-++.|..     +  -+|+|-+|||...+.+.|++..+.
T Consensus         8 ~~~e~~~~aA~~i~~~I~~~~~~~~~~f~ialsGGsTP~~~y~~L~~~~~~   58 (266)
T d1fsfa_           8 TAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKA   58 (266)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf             999999999999999999733046997799978982499999999977751


No 41 
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=43.83  E-value=9.6  Score=16.38  Aligned_cols=59  Identities=12%  Similarity=0.104  Sum_probs=36.3

Q ss_pred             HHHHHHHHH---HCCCCCEEEE-CC-CHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC
Q ss_conf             999999998---3899789988-79-17899999999998732870489618899999987315786
Q gi|254781054|r    8 RNAARRAIQ---YVVDGMTLGM-GT-GSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPL   69 (231)
Q Consensus         8 ~~~a~~A~~---~v~~gmviGl-Gt-GSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~   69 (231)
                      -..|..|+.   .+++|..|=+ |. |.+-.++++ |++.  .|..+.++..+......+++.|-..
T Consensus        10 ~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iq-la~~--~g~~vi~~~~~~~~~~~l~~~Ga~~   73 (183)
T d1pqwa_          10 YLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVS-IAKM--IGARIYTTAGSDAKREMLSRLGVEY   73 (183)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHH-HHHH--HTCEEEEEESSHHHHHHHHTTCCSE
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCH-HHCC--CCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             99999999997599998999998898886422301-2011--2232201101442100012223321


No 42 
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=41.67  E-value=10  Score=16.17  Aligned_cols=42  Identities=19%  Similarity=0.142  Sum_probs=26.6

Q ss_pred             HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf             3899789---988791789999999999873287048961889999998
Q gi|254781054|r   17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC   62 (231)
Q Consensus        17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a   62 (231)
                      .+++||.   +|-|||+|+.++-+..+    ..-.+.+|-.|......+
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG----~~G~V~aVD~s~~~l~~a  114 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVG----WEGKIFGIEFSPRVLREL  114 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHC----TTSEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHC----CCCEEEEEECCHHHHHHH
T ss_conf             669998899915577899999999849----997899994759999999


No 43 
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.79  E-value=11  Score=15.99  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=35.7

Q ss_pred             HHHHHHHHH---HCCCCCEEE-EC-CCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf             999999998---389978998-87-91789999999999873287048961889999998731578
Q gi|254781054|r    8 RNAARRAIQ---YVVDGMTLG-MG-TGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP   68 (231)
Q Consensus         8 ~~~a~~A~~---~v~~gmviG-lG-tGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~   68 (231)
                      -..|..|+.   .+++|..|= .| +|..-...++ +++.  .|.++.+..+|......++++|..
T Consensus        13 ~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq-~a~~--~G~~vi~~~~~~~~~~~~~~~Ga~   75 (174)
T d1yb5a2          13 YFTAYRALIHSACVKAGESVLVHGASGGVGLAACQ-IARA--YGLKILGTAGTEEGQKIVLQNGAH   75 (174)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHH-HHHH--TTCEEEEEESSHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999997589999989998446554212321-1003--686100243221112220126863


No 44 
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}
Probab=38.95  E-value=11  Score=15.91  Aligned_cols=12  Identities=33%  Similarity=0.393  Sum_probs=3.9

Q ss_pred             HHHHHHHHHCCC
Q ss_conf             899999962799
Q gi|254781054|r  191 PQIISGELCNIP  202 (231)
Q Consensus       191 p~~le~~L~~Ip  202 (231)
                      |+.++.-.+..|
T Consensus       179 ~~Gi~~l~~~~P  190 (224)
T d1bd3a_         179 PQGIERVFKEYP  190 (224)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHHCC
T ss_conf             799999998796


No 45 
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}
Probab=38.78  E-value=11  Score=15.90  Aligned_cols=52  Identities=19%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             HHHHHHHCCCCCEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHH----HHHCCCCC
Q ss_conf             9999983899789988--79178999999999987328704896188999999----87315786
Q gi|254781054|r   11 ARRAIQYVVDGMTLGM--GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENF----CKIHHIPL   69 (231)
Q Consensus        11 a~~A~~~v~~gmviGl--GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~----a~~~gi~~   69 (231)
                      ...+++.+++|.++=+  |+|..+.+|.    +   .+.+++++-.|...-..    +.+.|++-
T Consensus        22 ~~~~~~~~~~grvLDiGcG~G~~~~~la----~---~g~~v~gvD~s~~~l~~a~~~~~~~~~~~   79 (198)
T d2i6ga1          22 VLAAAKVVAPGRTLDLGCGNGRNSLYLA----A---NGYDVTAWDKNPASMANLERIKAAEGLDN   79 (198)
T ss_dssp             HHHHHTTSCSCEEEEETCTTSHHHHHHH----H---TTCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHCCCCCCCCEEEECCCCCHHHHHHH----H---HHHHHCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             9997154799959998899978899989----8---76654035676788999999754223332


No 46 
>d2qlva1 d.129.6.2 (A:460-630) Carbon catabolite-derepressing protein kinase SNF1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=38.31  E-value=5.3  Score=17.96  Aligned_cols=56  Identities=29%  Similarity=0.449  Sum_probs=35.6

Q ss_pred             CCC-C-CCCCEEEEECCHHHHHHHHHHHHHHCCCCC---------EEEEEECC-------------------CCCEECCC
Q ss_conf             455-7-887267872575899999986322148985---------03772258-------------------86362578
Q gi|254781054|r  127 FLG-R-GMLPIEIDQFGVNKTLSALKEVASCFGLNE---------ELRLRRNG-------------------SGLFVSDG  176 (231)
Q Consensus       127 ~Lg-~-~plPVEV~p~~~~~v~~~l~~~~~~~G~~~---------~lR~~~~~-------------------~gp~iTDn  176 (231)
                      +|| + -.-|.||    ...+.++|+++    |+.|         .+|.|...                   -.-|-+|.
T Consensus        47 hfGIRSrs~P~ei----M~evykALk~L----g~eWk~~~~~~~~~ir~Rwk~~~~~~~~~~~~~~~~vk~~iQLYqv~~  118 (171)
T d2qlva1          47 HFGIRSRSYPLDV----MGEIYIALKNL----GAEWAKPSEEDLWTIKLRWKYDIGNKTNTNEKIPDLMKMVIQLFQIET  118 (171)
T ss_dssp             EESEEECSCHHHH----HHHHHHHHHHH----TCEECCCC---CCEEEEEEC--------------CEEEEEEEEEC---
T ss_pred             EEECCCCCCHHHH----HHHHHHHHHHC----CCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC
T ss_conf             6503168998999----99999999986----998932687776489997406877654567788844899999998737


Q ss_pred             CCEEEEECCCCCCC
Q ss_conf             88899820798689
Q gi|254781054|r  177 GNYIVDAFFGFIPD  190 (231)
Q Consensus       177 GN~IlD~~~~~i~d  190 (231)
                      +||++|..+...+.
T Consensus       119 ~~YLlDFK~~g~e~  132 (171)
T d2qlva1         119 NNYLVDFKFDGWES  132 (171)
T ss_dssp             CCEEEEEEEEEEEC
T ss_pred             CCEEEEEECCCCCC
T ss_conf             86699885278654


No 47 
>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]}
Probab=36.88  E-value=11  Score=16.10  Aligned_cols=129  Identities=12%  Similarity=0.001  Sum_probs=65.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHCC----CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCC--C
Q ss_conf             9978998879178999999999987328----704896188999999873157865510088007986330004766--0
Q gi|254781054|r   19 VDGMTLGMGTGSTAKEFMILLADKIANG----FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSR--L   92 (231)
Q Consensus        19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~----~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~--l   92 (231)
                      ++-.-+=+=|+..|.+|.+.|.+.-.+-    .+.++.+-...|+..++++|++..-..+...    =.-++++.+.  .
T Consensus        51 ~~~d~vvfTS~ngV~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~~~~~s----~~l~~~~~~~~~~  126 (254)
T d1wd7a_          51 QGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTS----KSLLPLLPQGRGV  126 (254)
T ss_dssp             TCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHTSEEEESSHHHHHHHHHTTCCCSEECSSSG----GGGGGGCCCCCEE
T ss_pred             CCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCHHH----HHHHHHHHCCCCE
T ss_conf             599999998989999999999874952767841885999978999999973999853772007----9999987347978


Q ss_pred             EEEECC--CHHHHHHHHHHHHHCCEEEEEEHHH--------CCCCCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf             588316--5777778799861022699962303--------513455788726787257589999998632
Q gi|254781054|r   93 RLIKGY--GGALLREKIIAHAASRFIVIGDESK--------RVDFLGRGMLPIEIDQFGVNKTLSALKEVA  153 (231)
Q Consensus        93 ~lIKGg--GgAl~rEKiva~~a~~~I~i~D~sK--------~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~  153 (231)
                      -++.++  +...+.|.+-...+.-.-+.+=++.        +.+.+..  =++.++.|....+.+.+-+++
T Consensus       127 ~l~~~~~~~~~~L~~~L~~~G~~v~~v~~Y~t~~~~~~~~~l~~~l~~--~~~d~V~ftS~s~v~~f~~~~  195 (254)
T d1wd7a_         127 AALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLR--GEVDALAFVAAIQVEFLFEGA  195 (254)
T ss_dssp             EEEECSSSCCHHHHHHHHHTTEEEEEECSEECCBCHHHHHHHHHHHHT--TCCSEEEESSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHH
T ss_conf             999515678379999997366764699986640333673889999842--895299847889999999987


No 48 
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.33  E-value=11  Score=16.01  Aligned_cols=42  Identities=14%  Similarity=0.083  Sum_probs=27.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC
Q ss_conf             99789988791789999999999873287048961889999998731
Q gi|254781054|r   19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH   65 (231)
Q Consensus        19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~   65 (231)
                      ++-.+||.|.|++++.+.+.-     ...++++|--....-..|+++
T Consensus        80 k~vLiiGgG~G~~~~~~l~~~-----~~~~v~~vEiD~~Vv~~a~~~  121 (285)
T d2o07a1          80 RKVLIIGGGDGGVLREVVKHP-----SVESVVQCEIDEDVIQVSKKF  121 (285)
T ss_dssp             CEEEEEECTTSHHHHHHTTCT-----TCCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHCC-----CCCEEEECCCCHHHHHHHHHH
T ss_conf             768986799649999999759-----953136506778999999763


No 49 
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=34.40  E-value=13  Score=15.46  Aligned_cols=16  Identities=13%  Similarity=0.289  Sum_probs=8.5

Q ss_pred             HHHHHHHHCCCCCCCC
Q ss_conf             9999987315786551
Q gi|254781054|r   57 NTENFCKIHHIPLHSP   72 (231)
Q Consensus        57 ~t~~~a~~~gi~~~~l   72 (231)
                      .|..+++++|+|--.+
T Consensus        68 ~T~~wL~~~gI~Yd~L   83 (124)
T d1xpja_          68 IITEWLDKHQVPYDEI   83 (124)
T ss_dssp             HHHHHHHHTTCCCSEE
T ss_pred             HHHHHHHHCCCCCEEE
T ss_conf             9999999829982388


No 50 
>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]}
Probab=34.11  E-value=14  Score=15.43  Aligned_cols=45  Identities=13%  Similarity=0.063  Sum_probs=31.4

Q ss_pred             HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf             3899789988791789999999999873287048961889999998
Q gi|254781054|r   17 YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC   62 (231)
Q Consensus        17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a   62 (231)
                      .=++..+|++|+|++.... ...|.--..|.....|||+.-...-+
T Consensus        82 ~~r~~~iiaiGGG~v~D~a-gf~A~~y~rgi~~i~vPTtlla~vDs  126 (347)
T d1ujna_          82 LPRNATLLVVGGGTLTDLG-GFVAATYLRGVAYLAFPTTTLAIVDA  126 (347)
T ss_dssp             CCTTCEEEEEESHHHHHHH-HHHHHHBTTCCEEEEEECSHHHHHTT
T ss_pred             CCCCCCEEEEECHHHHHHH-HHHHHHHCCCCCEEECCCHHHHCCCC
T ss_conf             0356533686033233578-88765431785034036514303444


No 51 
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.75  E-value=14  Score=15.40  Aligned_cols=44  Identities=27%  Similarity=0.200  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHHHHHHHC-----C-CC-CEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf             87899999999999838-----9-97-899887917899999999998732
Q gi|254781054|r    2 DALQMKRNAARRAIQYV-----V-DG-MTLGMGTGSTAKEFMILLADKIAN   45 (231)
Q Consensus         2 ~~~~~K~~~a~~A~~~v-----~-~g-mviGlGtGSTv~~~i~~L~~~~~~   45 (231)
                      |.+++=+.+|+.-++.|     . ++ -+|+|-+|||-..+.+.|++...+
T Consensus         8 d~~e~s~~aA~~i~~~I~~~~~~~~~~~~i~lsGGsTP~~~y~~L~~~~~~   58 (281)
T d1ne7a_           8 HYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKN   58 (281)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf             999999999999999999733056897799979986799999999998752


No 52 
>d2qrda1 d.129.6.2 (A:450-576) Snf1-like protein kinase ssp2 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=33.13  E-value=6.5  Score=17.41  Aligned_cols=49  Identities=18%  Similarity=0.106  Sum_probs=30.5

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHCCCCC---------------EEEEEECC---------------CCCEECCCCCEEE
Q ss_conf             87267872575899999986322148985---------------03772258---------------8636257888899
Q gi|254781054|r  132 MLPIEIDQFGVNKTLSALKEVASCFGLNE---------------ELRLRRNG---------------SGLFVSDGGNYIV  181 (231)
Q Consensus       132 plPVEV~p~~~~~v~~~l~~~~~~~G~~~---------------~lR~~~~~---------------~gp~iTDnGN~Il  181 (231)
                      .=|.||    ...+.+++++.    |+.+               .+|.|-..               -.-|-+|.+||++
T Consensus        11 s~P~ei----M~eVYrALk~L----g~eWk~~~~~~~~~~~d~y~Ir~R~~~~~~~~~~~~~~vkm~iQLYqve~~~YLl   82 (127)
T d2qrda1          11 GDAPEI----LLAVYRALQRA----GAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFML   82 (127)
T ss_dssp             SCHHHH----HHHHHHHHHHH----TCEECCCCCBTTBCCGGGGEEEEEEECHHHHHTTCCEEEEEEEEEEEEETTEEEE
T ss_pred             CCHHHH----HHHHHHHHHHC----CCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCEEE
T ss_conf             996999----99999999985----9979665731024667765899986068865568872499999989974896799


Q ss_pred             EECCCCC
Q ss_conf             8207986
Q gi|254781054|r  182 DAFFGFI  188 (231)
Q Consensus       182 D~~~~~i  188 (231)
                      |..+...
T Consensus        83 DFK~dg~   89 (127)
T d2qrda1          83 DVKSNGY   89 (127)
T ss_dssp             EEEEEEE
T ss_pred             EECCCCC
T ss_conf             9724774


No 53 
>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}
Probab=32.45  E-value=14  Score=15.27  Aligned_cols=64  Identities=14%  Similarity=0.024  Sum_probs=36.2

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCC-CCCCCEEEEEECCHHC
Q ss_conf             899789988791789999999999873287048961889999998731578655-1008800798633000
Q gi|254781054|r   18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHS-PEDVSSVDLSIDGFDE   87 (231)
Q Consensus        18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~-l~~~~~iDi~iDGaDe   87 (231)
                      .++-.+||.|.|++++.+.+..     ....+++|--...--..|+++- |... ..+.+++.+.++-|-+
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~-----~~~~i~~VEIDp~Vi~~a~~~~-~~~~~~~~d~rv~v~~~Da~~  154 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHD-----SVEKAILCEVDGLVIEAARKYL-KQTSCGFDDPRAEIVIANGAE  154 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTST-----TCSEEEEEESCHHHHHHHHHHC-HHHHGGGGCTTEEEEESCHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHHH-HHHCCCCCCCCCEEEHHHHHH
T ss_conf             7658995698469999998549-----9744998458889999999888-752122257773798354899


No 54 
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.72  E-value=15  Score=15.09  Aligned_cols=68  Identities=16%  Similarity=-0.049  Sum_probs=41.3

Q ss_pred             EEEECCHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEC
Q ss_conf             7872575899999986322148985-03772258863625788889982079868989999996279968664
Q gi|254781054|r  136 EIDQFGVNKTLSALKEVASCFGLNE-ELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEH  207 (231)
Q Consensus       136 EV~p~~~~~v~~~l~~~~~~~G~~~-~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~  207 (231)
                      +|.-.-.+-+++.+-..+...+.+- .+..+....|   +-++.+.+++..... +...+-.+|.++|||.+.
T Consensus         5 ~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g---~~~~~~~i~v~~~~~-~l~~ll~kL~~l~~V~~V   73 (77)
T d1y7pa2           5 RIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHG---EHEGKALIYFEIEGG-DFEKILERVKTFDYIIEI   73 (77)
T ss_dssp             EEEEECCTTHHHHHHHHCC----CEEEEEEEECCSS---TTTTEEEEEEEECSS-CHHHHHHHHHTCTTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---EEEEEEEEEEECCCC-CHHHHHHHHHCCCCEEEE
T ss_conf             999955777699999999876999688885316788---179999999975864-499999998769992688


No 55 
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=30.55  E-value=16  Score=15.07  Aligned_cols=16  Identities=19%  Similarity=0.262  Sum_probs=8.3

Q ss_pred             CCCHHHHHHHHHCCCC
Q ss_conf             6898999999627996
Q gi|254781054|r  188 IPDPQIISGELCNIPG  203 (231)
Q Consensus       188 i~dp~~le~~L~~IpG  203 (231)
                      +..|+.++.-.+..|.
T Consensus       160 iaa~~Gi~~i~~~~P~  175 (208)
T d1i5ea_         160 IAAPEGVKAVETAHPD  175 (208)
T ss_dssp             EECHHHHHHHHHHCTT
T ss_pred             EECHHHHHHHHHHCCC
T ss_conf             6157999999987959


No 56 
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=30.26  E-value=12  Score=15.85  Aligned_cols=66  Identities=17%  Similarity=0.129  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCH-------HHHHHHHHHHHHHHC-CCE-EEEEECH--HHHHHHHHHCCCCCCCC
Q ss_conf             99999999999838997899887917-------899999999998732-870-4896188--99999987315786551
Q gi|254781054|r    5 QMKRNAARRAIQYVVDGMTLGMGTGS-------TAKEFMILLADKIAN-GFR-VQVIPSS--RNTENFCKIHHIPLHSP   72 (231)
Q Consensus         5 ~~K~~~a~~A~~~v~~gmviGlGtGS-------Tv~~~i~~L~~~~~~-~~~-i~~v~tS--~~t~~~a~~~gi~~~~l   72 (231)
                      .+|...-..+  .+.++-++=.|+=.       -.....+.|+++.+. +.+ +.+++++  .-....|..+|+|....
T Consensus         3 ~l~~~i~~~~--~~~~~~~l~~~~~l~~~~dP~ll~~i~~~la~~~~~~~~d~Ivg~~~~Gi~lA~~iA~~L~~p~v~~   79 (191)
T d1y0ba1           3 ALKRKIEEEG--VVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFA   79 (191)
T ss_dssp             HHHHHHHHHC--EEETTTEEECTTTTSSEECHHHHHHHHHHHHHHTTTTTCCEEEEETTTTHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHCCC--EECCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             8999986179--6679994764576576569999999999999985067997999547505788999986325038999


No 57 
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=29.92  E-value=11  Score=16.08  Aligned_cols=80  Identities=25%  Similarity=0.236  Sum_probs=40.7

Q ss_pred             CEEEECC--CHHHHHHHHHHHHHHH-CCCEEEEEE--CHHHHHHHHHHCC----------CCCCCC-CCCCEEEEEECCH
Q ss_conf             8998879--1789999999999873-287048961--8899999987315----------786551-0088007986330
Q gi|254781054|r   22 MTLGMGT--GSTAKEFMILLADKIA-NGFRVQVIP--SSRNTENFCKIHH----------IPLHSP-EDVSSVDLSIDGF   85 (231)
Q Consensus        22 mviGlGt--GSTv~~~i~~L~~~~~-~~~~i~~v~--tS~~t~~~a~~~g----------i~~~~l-~~~~~iDi~iDGa   85 (231)
                      |.||+|.  |||+..-+.+....+. .-+.-..-|  -..-|+.-..++|          .|.-++ .-+.-=||.|+|-
T Consensus        58 mLVG~GGnngTT~~aGv~Anr~gL~w~tk~G~~~an~~GSltq~stirlG~~~~~~~~~~~P~kd~lPl~~p~DiVfGGW  137 (397)
T d1vkoa1          58 LLVGLGGNNGSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGW  137 (397)
T ss_dssp             EEETTTSHHHHHHHHHHHHHHTTCEEEETTEEEECCCTTCHHHHCEEEEEEETTTTEEEEEEGGGTSCCCCGGGEEEEEE
T ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECC
T ss_conf             98438840888999999998758975466774058863514430335751357898733563765178898211689444


Q ss_pred             HCCCCCCEEEECCCHHHHHHHH
Q ss_conf             0047660588316577777879
Q gi|254781054|r   86 DEIDSRLRLIKGYGGALLREKI  107 (231)
Q Consensus        86 Devd~~l~lIKGgGgAl~rEKi  107 (231)
                      |-.+.++      .-|+.|-++
T Consensus       138 DI~~~nL------~eAa~rA~V  153 (397)
T d1vkoa1         138 DISDSNL------YEAMGRAKV  153 (397)
T ss_dssp             CSSCCCT------THHHHHHTC
T ss_pred             CCCCCCH------HHHHHHCCC
T ss_conf             6999988------999987599


No 58 
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=29.59  E-value=16  Score=14.97  Aligned_cols=165  Identities=16%  Similarity=0.116  Sum_probs=70.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC--------CCCCCCCEEEEEECCHHCCCCCCE
Q ss_conf             899887917899999999998732870489618899999987315786--------551008800798633000476605
Q gi|254781054|r   22 MTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPL--------HSPEDVSSVDLSIDGFDEIDSRLR   93 (231)
Q Consensus        22 mviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~--------~~l~~~~~iDi~iDGaDevd~~l~   93 (231)
                      ++.|+ +||--.+++-.|.+.... ..+.++++......++..+..=+        .+.+.....+...+..+-.-...-
T Consensus        32 ~L~Gl-sgS~ka~~~A~l~~~~~r-p~LvVt~~~~~A~~l~~dL~~~l~~~~v~~fp~~~~~~~~~~~~~~~~~~~~~~~  109 (408)
T d1c4oa1          32 TLLGA-TGTGKTVTMAKVIEALGR-PALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDA  109 (408)
T ss_dssp             EEEEC-TTSCHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCC
T ss_pred             EEECC-CCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             98568-887899999999998599-9999918999999999999986476645567753422575456845554444421


Q ss_pred             EEECCCHHHHHHHHH-HHHHCCEEEEEEHHHCCCCCC------CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             883165777778799-861022699962303513455------7887267872575899999986322148985037722
Q gi|254781054|r   94 LIKGYGGALLREKII-AHAASRFIVIGDESKRVDFLG------RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRR  166 (231)
Q Consensus        94 lIKGgGgAl~rEKiv-a~~a~~~I~i~D~sK~v~~Lg------~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~  166 (231)
                      ...-.- ...+.... ....+..|+++-...+...+.      ...+-+++   +...-...+.+.+..+||...-....
T Consensus       110 ~~~~~~-~~~~~~~~~~~~~~~~viVv~~~a~l~~l~~~~~~~~~~~~l~~---G~~~~~~~l~~~L~~~gY~r~~~V~~  185 (408)
T d1c4oa1         110 SINPEI-ERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVER---GKPYPREVLLERLLELGYQRNDIDLS  185 (408)
T ss_dssp             SCCHHH-HHHHHHHHHHHHHCSCEEEEEEGGGCSCCCCHHHHHHCCBC--------------------------------
T ss_pred             HHHHHH-HHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHHHHCEEEEEC---CCEEEHHHHHHHHHHHHCEECCEEEC
T ss_conf             034677-76444655532046765999511232167881887611488517---98950899999999752221430533


Q ss_pred             CCCCCEECCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             588636257888899820798689899999
Q gi|254781054|r  167 NGSGLFVSDGGNYIVDAFFGFIPDPQIISG  196 (231)
Q Consensus       167 ~~~gp~iTDnGN~IlD~~~~~i~dp~~le~  196 (231)
                        -|-|-...|  |+|++...-..|..+|-
T Consensus       186 --~GefsvRG~--IlDIfp~~~~~P~RIef  211 (408)
T d1c4oa1         186 --PGRFRAKGE--VLEIFPAYETEPIRVEL  211 (408)
T ss_dssp             ------------------------------
T ss_pred             --CCEEEEECC--CEEECCCCCCCCEEEEE
T ss_conf             --660573067--12760024576378999


No 59 
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=29.25  E-value=16  Score=14.93  Aligned_cols=42  Identities=12%  Similarity=0.190  Sum_probs=26.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC
Q ss_conf             99789988791789999999999873287048961889999998731
Q gi|254781054|r   19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH   65 (231)
Q Consensus        19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~   65 (231)
                      ++-.+||.|+|++++.+++.-     ....+++|-=...--..|+++
T Consensus        77 ~~vLiiGgG~G~~~~~~l~~~-----~~~~i~~VEID~~Vi~~a~~~  118 (274)
T d1iy9a_          77 EHVLVVGGGDGGVIREILKHP-----SVKKATLVDIDGKVIEYSKKF  118 (274)
T ss_dssp             CEEEEESCTTCHHHHHHTTCT-----TCSEEEEEESCHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHH
T ss_conf             337752788719999998469-----941588854888999999875


No 60 
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.40  E-value=18  Score=14.74  Aligned_cols=58  Identities=16%  Similarity=0.138  Sum_probs=34.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCC-CCCCCCEEEEEE
Q ss_conf             9978998879178999999999987328704896188999999873157865-510088007986
Q gi|254781054|r   19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH-SPEDVSSVDLSI   82 (231)
Q Consensus        19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~-~l~~~~~iDi~i   82 (231)
                      ++-.+||.|.|++++.+.+.-     ....+++|--....-..|+++- |.. ...+.+++.+.+
T Consensus        82 k~VLiiGgG~G~~~r~~l~~~-----~~~~i~~VEiD~~Vi~~~~~~f-~~~~~~~~~~r~~i~~  140 (290)
T d1xj5a_          82 KKVLVIGGGDGGVLREVARHA-----SIEQIDMCEIDKMVVDVSKQFF-PDVAIGYEDPRVNLVI  140 (290)
T ss_dssp             CEEEEETCSSSHHHHHHTTCT-----TCCEEEEEESCHHHHHHHHHHC-HHHHGGGGSTTEEEEE
T ss_pred             CCEEEECCCCHHHHHHHHHCC-----CCEEEEEECCCHHHHHHHHHHC-HHHHCCCCCCCCEEEE
T ss_conf             534774698369999998566-----6304687258899999999855-3321134699747998


No 61 
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.12  E-value=18  Score=14.70  Aligned_cols=39  Identities=15%  Similarity=0.247  Sum_probs=24.6

Q ss_pred             HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH
Q ss_conf             3899789---9887917899999999998732870489618899999
Q gi|254781054|r   17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN   60 (231)
Q Consensus        17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~   60 (231)
                      .+++|+.   +|-|||+|+.++.+.    ..++ .+.+|--|...-.
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~----v~~g-~V~gvDis~~~i~   94 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADI----VDEG-IIYAVEYSAKPFE   94 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHH----TTTS-EEEEECCCHHHHH
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHH----CCCC-EEEEEECCHHHHH
T ss_conf             9999999999278579999999974----1677-6999908799999


No 62 
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.43  E-value=18  Score=14.62  Aligned_cols=43  Identities=14%  Similarity=0.006  Sum_probs=27.4

Q ss_pred             HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
Q ss_conf             3899789---98879178999999999987328704896188999999873
Q gi|254781054|r   17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI   64 (231)
Q Consensus        17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~   64 (231)
                      .+++|+.   +|-|||+|+.++.+.    . ....+.+|-.|...-..+.+
T Consensus        71 ~ikpG~~VLDlGcGsG~~~~~la~~----~-~~g~V~aVDiS~~~i~~a~~  116 (230)
T d1g8sa_          71 PIKRDSKILYLGASAGTTPSHVADI----A-DKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHH----T-TTSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECEECCHHHHHHHHH----C-CCCEEEEEECCHHHHHHHHH
T ss_conf             8899998999088748899999974----8-99889999492899999999


No 63 
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]}
Probab=25.78  E-value=19  Score=14.55  Aligned_cols=17  Identities=18%  Similarity=0.161  Sum_probs=10.0

Q ss_pred             CCCHHHHHHHHHCCCCE
Q ss_conf             68989999996279968
Q gi|254781054|r  188 IPDPQIISGELCNIPGV  204 (231)
Q Consensus       188 i~dp~~le~~L~~IpGV  204 (231)
                      +..|+.++.-.+..|+|
T Consensus       169 ias~~Gi~~l~~~~P~v  185 (215)
T d1xtta1         169 ISSEYGVNKILSKYPFI  185 (215)
T ss_dssp             EEEHHHHHHHHHHCTTS
T ss_pred             EECHHHHHHHHHHCCCC
T ss_conf             85489999999879498


No 64 
>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}
Probab=25.62  E-value=19  Score=14.53  Aligned_cols=30  Identities=27%  Similarity=0.394  Sum_probs=15.7

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHCCC
Q ss_conf             899789988791789999999999873287
Q gi|254781054|r   18 VVDGMTLGMGTGSTAKEFMILLADKIANGF   47 (231)
Q Consensus        18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~   47 (231)
                      +.+||--|=|+=.|+...++.|.+..+.+.
T Consensus        93 i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~  122 (254)
T d2nxca1          93 IEPGMAFGTGHHETTRLALKALARHLRPGD  122 (254)
T ss_dssp             CCCC-----CCSHHHHHHHHHHHHHCCTTC
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             746545675434225677777775167667


No 65 
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.45  E-value=20  Score=14.39  Aligned_cols=36  Identities=25%  Similarity=0.200  Sum_probs=28.2

Q ss_pred             HHHHHHHHHH----------HCCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf             9999999998----------38997899887917899999999998
Q gi|254781054|r    7 KRNAARRAIQ----------YVVDGMTLGMGTGSTAKEFMILLADK   42 (231)
Q Consensus         7 K~~~a~~A~~----------~v~~gmviGlGtGSTv~~~i~~L~~~   42 (231)
                      -+..|++.++          +|++|.++=+|-|+..+....+|.++
T Consensus        10 ~~~Ia~~v~~f~~~ei~~grLv~dG~tLQ~GIG~ip~AV~~~L~~~   55 (274)
T d2g39a2          10 TQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIES   55 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHC
T ss_conf             9999999999998776516768899831365688999999998538


No 66 
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}
Probab=24.37  E-value=20  Score=14.38  Aligned_cols=46  Identities=15%  Similarity=0.244  Sum_probs=31.7

Q ss_pred             CCCCCEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCC
Q ss_conf             899789988--7917899999999998732870489618899999987315
Q gi|254781054|r   18 VVDGMTLGM--GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHH   66 (231)
Q Consensus        18 v~~gmviGl--GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~g   66 (231)
                      .++++.+=+  |+|..-.+.|+.+ +  +.|.++.++++|.+...+++++|
T Consensus        29 ~~~~~~vlI~gasGgVG~~aiQla-k--~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          29 RPQDGEIVVTGASGGVGSTAVALL-H--KLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHH-H--HTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHH-H--HCCCEEEEEECCHHHHHHHHHCC
T ss_conf             158976898868996999999999-9--80995999989889999999778


No 67 
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=24.30  E-value=20  Score=14.37  Aligned_cols=85  Identities=14%  Similarity=0.178  Sum_probs=41.6

Q ss_pred             EEECCCHHHHHHHHHHHHHHH-CC-CEEEEEECHH--H------HHHHHHHCCCCCCCCCCCC---E---EEEEECCHHC
Q ss_conf             988791789999999999873-28-7048961889--9------9999873157865510088---0---0798633000
Q gi|254781054|r   24 LGMGTGSTAKEFMILLADKIA-NG-FRVQVIPSSR--N------TENFCKIHHIPLHSPEDVS---S---VDLSIDGFDE   87 (231)
Q Consensus        24 iGlGtGSTv~~~i~~L~~~~~-~~-~~i~~v~tS~--~------t~~~a~~~gi~~~~l~~~~---~---iDi~iDGaDe   87 (231)
                      +=.|-|+     ++.|++.++ .| .++.+|..+.  +      ....+++.|+.+.-++.+.   .   ++=..+=+-+
T Consensus        11 ~~fG~g~-----l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~   85 (385)
T d1rrma_          11 AWFGRGA-----VGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQN   85 (385)
T ss_dssp             EEESTTG-----GGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHH
T ss_pred             CEECCCH-----HHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             2798689-----99999999976999799998965565808999999998759859998682699798999988654303


Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHC
Q ss_conf             47660588316577777879986102
Q gi|254781054|r   88 IDSRLRLIKGYGGALLREKIIAHAAS  113 (231)
Q Consensus        88 vd~~l~lIKGgGgAl~rEKiva~~a~  113 (231)
                      .+.|.-.==|||-++=-=|.+|..+.
T Consensus        86 ~~~D~IiaiGGGS~iD~aK~ia~~~~  111 (385)
T d1rrma_          86 SGADYLIAIGGGSPQDTCKAIGIISN  111 (385)
T ss_dssp             HTCSEEEEEESHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf             58888986698842269999999963


No 68 
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.89  E-value=20  Score=14.32  Aligned_cols=38  Identities=21%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf             89978998879178999999999987328704896188999
Q gi|254781054|r   18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNT   58 (231)
Q Consensus        18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t   58 (231)
                      -+...+||+|.||+.... +.++.+  .+..+..|||+..|
T Consensus        84 ~~~D~IiavGGGs~iD~a-K~iA~~--~~~p~i~IPTT~gt  121 (366)
T d1jq5a_          84 AEAAIVIGVGGGKTLDTA-KAVADE--LDAYIVIVPTAAST  121 (366)
T ss_dssp             TTCSEEEEEESHHHHHHH-HHHHHH--HTCEEEEEESSCCS
T ss_pred             CCCCEEEEECCCCCCCCH-HEEEEC--CCCEEEEHHHHHHH
T ss_conf             388689981688644220-001204--66535402434434


No 69 
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=22.73  E-value=22  Score=14.18  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             HCCCCCEEEECCCHHHHHHHHHHHHHHHCCC-EEEEEECH-HHHHHHHHHCCCCCCCCCC
Q ss_conf             3899789988791789999999999873287-04896188-9999998731578655100
Q gi|254781054|r   17 YVVDGMTLGMGTGSTAKEFMILLADKIANGF-RVQVIPSS-RNTENFCKIHHIPLHSPED   74 (231)
Q Consensus        17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~-~i~~v~tS-~~t~~~a~~~gi~~~~l~~   74 (231)
                      -+++..++=+|+|.+....++.|..+   +. +++++.-+ .....++.++|....++++
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~---g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~   77 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDR---GVRAVLVANRTYERAVELARDLGGEAVRFDE   77 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHH---CCSEEEEECSSHHHHHHHHHHHTCEECCGGG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHCCCCCCHH
T ss_conf             70169699987988999999999966---9857999758688999988864114345145


No 70 
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
Probab=22.14  E-value=22  Score=14.11  Aligned_cols=59  Identities=20%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             CEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHH-HHHHHHCCCCCCC-CCCCCEEEEEE
Q ss_conf             89988-79178999999999987328704896188999-9998731578655-10088007986
Q gi|254781054|r   22 MTLGM-GTGSTAKEFMILLADKIANGFRVQVIPSSRNT-ENFCKIHHIPLHS-PEDVSSVDLSI   82 (231)
Q Consensus        22 mviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t-~~~a~~~gi~~~~-l~~~~~iDi~i   82 (231)
                      |-||+ |.|.-...+++.|.+.  .+.++.+...|... +.+++++|+...+ .+++.+-|+.|
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~--~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~   62 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLI   62 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
T ss_conf             9899996749999999999978--9975899948816777765421122343111113555089


No 71 
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}
Probab=20.60  E-value=24  Score=13.91  Aligned_cols=111  Identities=21%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             HHHHH--HCCCCCEEEEC-----CCHHHHHHHHHHHHHHHCC-CEEEEEECHHHHH------------------------
Q ss_conf             99998--38997899887-----9178999999999987328-7048961889999------------------------
Q gi|254781054|r   12 RRAIQ--YVVDGMTLGMG-----TGSTAKEFMILLADKIANG-FRVQVIPSSRNTE------------------------   59 (231)
Q Consensus        12 ~~A~~--~v~~gmviGlG-----tGSTv~~~i~~L~~~~~~~-~~i~~v~tS~~t~------------------------   59 (231)
                      ++|++  -++|||+|..-     .--.++..++.++++   | ++++..|||....                        
T Consensus        47 ~eai~~~GlkDGMTiSFHHh~R~GD~v~n~Vm~~ia~m---GiKdLtia~SSl~~~h~plve~I~~GvVt~I~tsg~rG~  123 (236)
T d1xr4a1          47 EEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEM---GFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGK  123 (236)
T ss_dssp             HHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHT---TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHH
T ss_pred             HHHHHHCCCCCCCEEEEEHHCCCCCHHHHHHHHHHHHC---CCCCCEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCH
T ss_conf             99999808867978885310037137899999999974---967617702336401189999986583667886676736


Q ss_pred             -HHHHHCCC---CCCC---------CCC-CCEEEEEECCHHCCCCCCEE--EECC--CHHHHHHHHHHHHHCCEEEEEEH
Q ss_conf             -99873157---8655---------100-88007986330004766058--8316--57777787998610226999623
Q gi|254781054|r   60 -NFCKIHHI---PLHS---------PED-VSSVDLSIDGFDEIDSRLRL--IKGY--GGALLREKIIAHAASRFIVIGDE  121 (231)
Q Consensus        60 -~~a~~~gi---~~~~---------l~~-~~~iDi~iDGaDevd~~l~l--IKGg--GgAl~rEKiva~~a~~~I~i~D~  121 (231)
                       -.+...|+   |++-         ++. --+||++|=||---|.-+|+  ..|.  =|.|=.-++=|+.|++.|.+.|.
T Consensus       124 lgeaiS~G~l~~PviirSHGGRaraIesGe~~IDVAFigaP~~D~~GN~nG~~G~saCGsLGYa~vDA~yA~~VV~vTD~  203 (236)
T d1xr4a1         124 LGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEE  203 (236)
T ss_dssp             HHHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHCCCCCCCEEEECCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECC
T ss_conf             89997367778886886578742331258730689997377642225867876875664564113638862918998446


Q ss_pred             HHCCCC
Q ss_conf             035134
Q gi|254781054|r  122 SKRVDF  127 (231)
Q Consensus       122 sK~v~~  127 (231)
                        +|+.
T Consensus       204 --lvpy  207 (236)
T d1xr4a1         204 --WVEF  207 (236)
T ss_dssp             --EECS
T ss_pred             --CCCC
T ss_conf             --7679


No 72 
>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}
Probab=20.35  E-value=24  Score=13.88  Aligned_cols=64  Identities=19%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCC--CCCCCCEEEEEECCHHC
Q ss_conf             89978998879178999999999987328704896188999999873157865--51008800798633000
Q gi|254781054|r   18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH--SPEDVSSVDLSIDGFDE   87 (231)
Q Consensus        18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~--~l~~~~~iDi~iDGaDe   87 (231)
                      .++-.+||.|+|+++..+.+.-     ...++++|--....-..|+++ +|..  ...+.+++.+.++-|-+
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~-----~~~~v~~VEiD~~Vi~~a~~~-f~~~~~~~~~d~rv~i~~~Da~~  143 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHP-----TVEKAVMVDIDGELVEVAKRH-MPEWHQGAFDDPRAVLVIDDARA  143 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTST-----TCCEEEEEESCHHHHHHHHHH-CHHHHTTGGGCTTEEEEESCHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHC-CCCCCCCCCCCCCEEEEECHHHH
T ss_conf             6658983799669999998559-----964599854887899999752-84013575678842999860999


Done!