Query gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 231 No_of_seqs 127 out of 1329 Neff 5.5 Searched_HMMs 13730 Date Wed Jun 1 11:14:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781054.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1o8ba1 c.124.1.4 (A:23-126,A: 100.0 0 0 308.2 3.3 121 23-145 1-123 (124) 2 d1uj4a1 c.124.1.4 (A:3-131,A:2 100.0 3.5E-30 2.5E-34 205.6 12.2 142 3-145 3-149 (151) 3 d1lk5a1 c.124.1.4 (A:1-130,A:2 100.0 1.3E-29 9.8E-34 201.9 9.9 145 1-149 1-147 (149) 4 d1m0sa1 c.124.1.4 (A:1-126,A:1 100.0 3E-28 2.2E-32 193.5 14.4 140 1-142 1-143 (147) 5 d1lk5a2 d.58.40.1 (A:131-210) 99.9 4.3E-27 3.1E-31 186.3 7.7 79 129-211 2-80 (80) 6 d1uj4a2 d.58.40.1 (A:132-205) 99.9 6E-25 4.4E-29 173.0 8.2 74 129-208 1-74 (74) 7 d1o8ba2 d.58.40.1 (A:127-198) 99.9 5.5E-25 4E-29 173.2 7.3 72 129-210 1-72 (72) 8 d1m0sa2 d.58.40.1 (A:127-198) 99.9 7.6E-24 5.5E-28 166.2 7.2 70 130-209 3-72 (72) 9 d1vb5a_ c.124.1.5 (A:) Putativ 97.3 0.0044 3.2E-07 37.2 12.5 130 4-136 92-234 (274) 10 d1t5oa_ c.124.1.5 (A:) Putativ 96.9 0.0096 7E-07 35.0 11.3 130 5-139 130-284 (340) 11 d1k6da_ c.124.1.2 (A:) Acetate 96.7 0.00065 4.7E-08 42.3 3.6 118 7-127 4-195 (219) 12 d1poib_ c.124.1.3 (B:) Glutaco 96.4 0.0036 2.6E-07 37.7 6.0 117 6-129 7-161 (260) 13 d2gnpa1 c.124.1.8 (A:56-317) T 96.0 0.0052 3.8E-07 36.6 5.1 68 3-72 33-117 (262) 14 d3efba1 c.124.1.8 (A:11-265) S 96.0 0.0044 3.2E-07 37.1 4.6 69 3-72 28-114 (255) 15 d1t9ka_ c.124.1.5 (A:) Probabl 95.9 0.059 4.3E-06 30.1 10.7 131 5-139 129-285 (340) 16 d2okga1 c.124.1.8 (A:89-338) C 95.7 0.0083 6.1E-07 35.4 5.1 68 4-72 33-116 (250) 17 d2r5fa1 c.124.1.8 (A:59-316) T 95.4 0.0094 6.8E-07 35.1 4.5 170 3-206 31-224 (258) 18 d2o0ma1 c.124.1.8 (A:95-341) T 95.0 0.0094 6.8E-07 35.1 3.6 69 4-72 27-112 (247) 19 d2g39a1 c.124.1.2 (A:3-223) Ac 94.6 0.036 2.7E-06 31.4 5.6 122 6-129 11-172 (221) 20 d1xr4a2 c.124.1.2 (A:237-505) 93.3 0.23 1.7E-05 26.4 7.8 110 2-118 6-170 (269) 21 d2ahua1 c.124.1.3 (A:283-529) 93.1 0.2 1.5E-05 26.8 7.2 111 6-122 5-137 (247) 22 d2a0ua1 c.124.1.5 (A:10-383) I 89.1 0.71 5.2E-05 23.4 9.2 105 31-139 188-309 (374) 23 g1w2w.1 c.124.1.5 (A:,B:) Puta 88.7 0.76 5.5E-05 23.2 11.6 118 19-138 172-323 (402) 24 d1ooya1 c.124.1.3 (A:261-481) 88.6 0.41 3E-05 24.9 5.2 108 6-122 2-144 (221) 25 d2ahua2 c.124.1.2 (A:4-276) Pu 86.7 0.48 3.5E-05 24.5 4.6 48 8-55 12-66 (273) 26 d1poia_ c.124.1.2 (A:) Glutaco 86.3 0.14 1E-05 27.7 1.7 46 77-126 171-216 (317) 27 d1iz0a2 c.2.1.1 (A:99-269) Qui 81.8 1.2 8.4E-05 22.1 4.8 58 9-68 14-74 (171) 28 d1ooya2 c.124.1.2 (A:1-242) Su 80.6 0.9 6.6E-05 22.8 3.9 41 11-53 7-50 (242) 29 d1zcza2 c.97.1.4 (A:158-452) A 77.4 1.1 8.1E-05 22.2 3.6 10 24-33 71-80 (295) 30 d1o5oa_ c.61.1.1 (A:) Uracil P 73.0 2.2 0.00016 20.4 4.2 16 26-41 135-150 (210) 31 d1i1ga2 d.58.4.2 (A:62-141) Lp 72.5 3 0.00022 19.5 5.1 64 133-208 7-71 (80) 32 d1v3va2 c.2.1.1 (A:113-294) Le 70.7 3.3 0.00024 19.3 6.9 59 8-68 14-76 (182) 33 d1sg6a_ e.22.1.1 (A:) Dehydroq 52.3 7.1 0.00051 17.2 5.0 43 19-62 102-144 (389) 34 d1nvmb1 c.2.1.3 (B:1-131,B:287 51.1 7.4 0.00054 17.1 4.2 88 22-123 5-105 (157) 35 d1g8ma2 c.97.1.4 (A:201-593) A 50.2 4.8 0.00035 18.2 2.5 46 21-71 117-165 (393) 36 d1pl8a2 c.2.1.1 (A:146-316) Ke 49.1 7.9 0.00058 16.9 5.7 58 9-69 13-74 (171) 37 d1jr2a_ c.113.1.1 (A:) Uroporp 47.5 8.4 0.00061 16.7 6.5 139 12-154 47-209 (260) 38 d2nzca1 d.58.18.14 (A:2-81) Hy 45.3 9.1 0.00066 16.5 4.4 62 141-206 13-74 (80) 39 d2v8qa1 d.129.6.2 (A:396-548) 44.3 6.5 0.00047 17.4 2.4 50 132-189 9-74 (153) 40 d1fsfa_ c.124.1.1 (A:) Glucosa 44.2 9.4 0.00069 16.4 3.3 44 2-45 8-58 (266) 41 d1pqwa_ c.2.1.1 (A:) Putative 43.8 9.6 0.0007 16.4 6.9 59 8-69 10-73 (183) 42 d1g8aa_ c.66.1.3 (A:) Fibrilla 41.7 10 0.00075 16.2 3.6 42 17-62 70-114 (227) 43 d1yb5a2 c.2.1.1 (A:121-294) Qu 39.8 11 0.0008 16.0 6.1 58 8-68 13-75 (174) 44 d1bd3a_ c.61.1.1 (A:) Uracil P 38.9 11 0.00083 15.9 6.3 12 191-202 179-190 (224) 45 d2i6ga1 c.66.1.44 (A:1-198) Pu 38.8 11 0.00083 15.9 4.3 52 11-69 22-79 (198) 46 d2qlva1 d.129.6.2 (A:460-630) 38.3 5.3 0.00039 18.0 1.2 56 127-190 47-132 (171) 47 d1wd7a_ c.113.1.1 (A:) Probabl 36.9 11 0.00077 16.1 2.5 129 19-153 51-195 (254) 48 d2o07a1 c.66.1.17 (A:16-300) S 35.3 11 0.0008 16.0 2.4 42 19-65 80-121 (285) 49 d1xpja_ c.108.1.18 (A:) Hypoth 34.4 13 0.00098 15.5 5.6 16 57-72 68-83 (124) 50 d1ujna_ e.22.1.1 (A:) Dehydroq 34.1 14 0.00099 15.4 4.5 45 17-62 82-126 (347) 51 d1ne7a_ c.124.1.1 (A:) Glucosa 33.7 14 0.001 15.4 5.7 44 2-45 8-58 (281) 52 d2qrda1 d.129.6.2 (A:450-576) 33.1 6.5 0.00048 17.4 1.0 49 132-188 11-89 (127) 53 d1inla_ c.66.1.17 (A:) Spermid 32.4 14 0.0011 15.3 3.5 64 18-87 90-154 (295) 54 d1y7pa2 d.58.18.12 (A:2-78) Hy 30.7 15 0.0011 15.1 7.1 68 136-207 5-73 (77) 55 d1i5ea_ c.61.1.1 (A:) Uracil P 30.6 16 0.0011 15.1 4.6 16 188-203 160-175 (208) 56 d1y0ba1 c.61.1.1 (A:1-191) Xan 30.3 12 0.00085 15.8 1.9 66 5-72 3-79 (191) 57 d1vkoa1 c.2.1.3 (A:11-314,A:42 29.9 11 0.00078 16.1 1.6 80 22-107 58-153 (397) 58 d1c4oa1 c.37.1.19 (A:2-409) Nu 29.6 16 0.0012 15.0 6.9 165 22-196 32-211 (408) 59 d1iy9a_ c.66.1.17 (A:) Spermid 29.2 16 0.0012 14.9 2.6 42 19-65 77-118 (274) 60 d1xj5a_ c.66.1.17 (A:) Spermid 27.4 18 0.0013 14.7 2.4 58 19-82 82-140 (290) 61 d1nt2a_ c.66.1.3 (A:) Fibrilla 27.1 18 0.0013 14.7 4.4 39 17-60 53-94 (209) 62 d1g8sa_ c.66.1.3 (A:) Fibrilla 26.4 18 0.0013 14.6 4.4 43 17-64 71-116 (230) 63 d1xtta1 c.61.1.1 (A:2-216) Ura 25.8 19 0.0014 14.5 3.5 17 188-204 169-185 (215) 64 d2nxca1 c.66.1.39 (A:1-254) Pr 25.6 19 0.0014 14.5 4.0 30 18-47 93-122 (254) 65 d2g39a2 c.124.1.2 (A:224-497) 24.5 20 0.0015 14.4 2.5 36 7-42 10-55 (274) 66 d1o8ca2 c.2.1.1 (A:116-192) Hy 24.4 20 0.0015 14.4 3.4 46 18-66 29-76 (77) 67 d1rrma_ e.22.1.2 (A:) Lactalde 24.3 20 0.0015 14.4 5.0 85 24-113 11-111 (385) 68 d1jq5a_ e.22.1.2 (A:) Glycerol 23.9 20 0.0015 14.3 5.5 38 18-58 84-121 (366) 69 d1gpja2 c.2.1.7 (A:144-302) Gl 22.7 22 0.0016 14.2 9.0 55 17-74 21-77 (159) 70 d1yqga2 c.2.1.6 (A:1-152) Pyrr 22.1 22 0.0016 14.1 6.4 59 22-82 1-62 (152) 71 d1xr4a1 c.124.1.2 (A:1-236) Pu 20.6 24 0.0017 13.9 5.2 111 12-127 47-207 (236) 72 d1uira_ c.66.1.17 (A:) Spermid 20.3 24 0.0018 13.9 4.1 64 18-87 78-143 (312) No 1 >d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=308.19 Aligned_cols=121 Identities=37% Similarity=0.509 Sum_probs=111.8 Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHH Q ss_conf 99887917899999999998732870489618899999987315786551008800798633000476605883165777 Q gi|254781054|r 23 TLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGAL 102 (231) Q Consensus 23 viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl 102 (231) +||||||||+.+||++|+++. +....+||||.+|+.+|+++|||+.++++++++|+|||||||||+++|||||||||| T Consensus 1 VvGlGtGSTv~~~i~~L~~~~--~~~~~~V~tS~~t~~~~~~~gi~~~~l~~~~~iDi~iDGADevd~~l~lIKGGGgal 78 (124) T d1o8ba1 1 IVGVGTGSTAAHFIDALGTMK--GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAAL 78 (124) T ss_dssp CEEECCSCC-----------------CCEEESCCC------------CCGGGCSCEEEEEECCSEECTTSCEECCCCC-H T ss_pred CEEECCHHHHHHHHHHHHHHH--CCCCEEECCHHHHHHHHHHCCCCCCCHHHCCCEEEEECCHHHCCCCCEEHHHCCCCC T ss_conf 988645699999999998503--776458747579999999808876671017831698415232277740523277412 Q ss_pred HHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEE--EECCHHHH Q ss_conf 77879986102269996230351345578872678--72575899 Q gi|254781054|r 103 LREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEI--DQFGVNKT 145 (231) Q Consensus 103 ~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV--~p~~~~~v 145 (231) +|||++|++|++||||+|+||+|++||.||+|||| +|+||+++ T Consensus 79 ~rEKivA~~A~~~i~I~DesK~V~~Lg~~~~PVevev~p~a~~~V 123 (124) T d1o8ba1 79 TREKIIASVAEKFICIADASKQVDILANRGADVALIGTPDGVKTI 123 (124) T ss_dssp HHHHHHHHHEEEEEEEEEGGGBCSSBCSSCCSEEEEEETTEEEEE T ss_pred HHHHHHHHHCCCEEEEEECCCEECCCCCCCCCEEEEECCCCHHHC T ss_conf 278899985683799983872615368878767999764613311 No 2 >d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Probab=99.97 E-value=3.5e-30 Score=205.56 Aligned_cols=142 Identities=46% Similarity=0.650 Sum_probs=127.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE Q ss_conf 78999999999998389978998879178999999999987328--7048961889999998731578655100880079 Q gi|254781054|r 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231) Q Consensus 3 ~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~--~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231) .+..|+.+|++|++||+|||+|+||+|||+.+++++|+++.... .++..++++......+...++....+.+ -++|+ T Consensus 3 ~~~~K~~IA~~A~~~I~dg~~I~LdsGTT~~~la~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~l~~-~~~D~ 81 (151) T d1uj4a1 3 LESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDL 81 (151) T ss_dssp THHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCT-TCEEE T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCCCCCC-CEECE T ss_conf 79999999999997689999999896189999999998877540442134214326589998627742212234-30058 Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC---CCCCCEEEEECCHHHH Q ss_conf 8633000476605883165777778799861022699962303513455---7887267872575899 Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG---RGMLPIEIDQFGVNKT 145 (231) Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg---~~plPVEV~p~~~~~v 145 (231) +|+|||.+|+++++.+++++.+..||.++.+|+++|+++|+||+|++|+ .+|+||||+|+|++.+ T Consensus 82 aF~g~~gvd~~~g~~~~~~~e~~~kk~~~~~A~~~ilLaD~SKlv~~L~~~~~~p~piev~p~~~~~v 149 (151) T d1uj4a1 82 AIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLLFVGMATRALVAGPFGVEEL 149 (151) T ss_dssp EEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSEECSCCSEEEEEETTEEEEE T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCEECCCCCCCCCCEEEEECCCHHHHC T ss_conf 99716612577671038889998877898736849999978840220244899977699835657413 No 3 >d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=99.96 E-value=1.3e-29 Score=201.90 Aligned_cols=145 Identities=39% Similarity=0.630 Sum_probs=133.9 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEE Q ss_conf 9878999999999998389978998879178999999999987328--70489618899999987315786551008800 Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSV 78 (231) Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~--~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~i 78 (231) ||++|+|+.+|++|+++|+|||+|+||+|||+.+++++|.++.... .++..++++......+...|....++.+..++ T Consensus 1 mn~~E~K~~IA~~Aa~lI~dg~~I~ldsGTT~~~la~~L~~~~~~~v~t~~~~i~~~~~~~~~~~~~G~~~~~~~~~~~~ 80 (149) T d1lk5a1 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAI 80 (149) T ss_dssp CCHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCCCCCCHHHCCCC T ss_conf 98799999999999976899999998886089999999977533553234143202036678888628522302104642 Q ss_pred EEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHH Q ss_conf 79863300047660588316577777879986102269996230351345578872678725758999999 Q gi|254781054|r 79 DLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSAL 149 (231) Q Consensus 79 Di~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l 149 (231) |++|||||.+|+++.+.+++++.+..+|.++++|+++|+++|+||+|.+|+ ||||+|.+|..+.+.| T Consensus 81 d~~f~g~~~id~~~g~~~~~~~~~~~kk~m~~~A~~~illaDsSK~v~~L~----~iev~~~~~~~~~~~i 147 (149) T d1lk5a1 81 DVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLD----IADIVIVGTREGVKKL 147 (149) T ss_dssp EEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTS----CCCEEEEEETTEEEEE T ss_pred CEEEEECCEECCCCCEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC----CCCCCEEEHHHHHHHH T ss_conf 389975777768673247979999998999986095999996871306679----9578810159999972 No 4 >d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Probab=99.96 E-value=3e-28 Score=193.55 Aligned_cols=140 Identities=37% Similarity=0.490 Sum_probs=126.6 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE Q ss_conf 98789999999999983899789988791789999999999873287048961889999998731578655100880079 Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231) Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231) |||.|.|+.+|++|++||+||++|+||+|||+.+++++|.++ ....+...+++..+.......|.......+.-++|+ T Consensus 1 m~~~e~K~~IA~~A~~lI~dg~~I~LdsGTT~~~la~~L~~~--~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~D~ 78 (147) T d1m0sa1 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVAASKESEELLRKQGIEVFNANDVSSLDI 78 (147) T ss_dssp CCHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTT--GGGSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEE T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH--CCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCE T ss_conf 986999999999999768999999988863699999998751--564366123047769999864873000133455557 Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCC-CCCE--EEEECCH Q ss_conf 863300047660588316577777879986102269996230351345578-8726--7872575 Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRG-MLPI--EIDQFGV 142 (231) Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~-plPV--EV~p~~~ 142 (231) +|+|||.||++..+.+++++++..+|+++++|+++|+++|+||+|+.|+.| |+|| |+.|.+. T Consensus 79 aF~g~~gi~~~~glt~~~~~~~~~~k~~~~~a~~~ivlaDsSKlv~~l~~~~~i~v~i~~~~~~~ 143 (147) T d1m0sa1 79 YVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLFALRGADVVIVGTPEGA 143 (147) T ss_dssp EEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTECTTCCSEEEEEETTEE T ss_pred EEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEEHHHH T ss_conf 98347655688616638899999988999847809999628814141489997007899806767 No 5 >d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=99.93 E-value=4.3e-27 Score=186.35 Aligned_cols=79 Identities=38% Similarity=0.579 Sum_probs=75.0 Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECC Q ss_conf 57887267872575899999986322148985037722588636257888899820798689899999962799686648 Q gi|254781054|r 129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHG 208 (231) Q Consensus 129 g~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~G 208 (231) -+|||||||+||+|.++.+.|++ +|+++++|++.+++|||+|||||||+|++|+++.||.+++.+|++|||||||| T Consensus 2 ~KfPlPVEV~p~~~~~v~~~l~~----~g~~~~lR~~~~~~gp~iTDnGN~I~D~~~~~i~~p~~l~~~L~~ipGVVe~G 77 (80) T d1lk5a2 2 QKMPVPIEVIPQAWKAIIEELSI----FNAKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENG 77 (80) T ss_dssp SSCCEEEEECGGGHHHHHHHGGG----GTCEEEECBCSSSSSBCCCTTSCEEEEEECSCCSCHHHHHHHHHTSTTEEEES T ss_pred CCCCCCEEECHHHHHHHHHHHHH----CCCCCEEECCCCCCCCEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEC T ss_conf 85875789857289999999998----09983172046788876825999798788898899999999997899989517 Q ss_pred EEC Q ss_conf 024 Q gi|254781054|r 209 LFI 211 (231) Q Consensus 209 lF~ 211 (231) ||. T Consensus 78 LFa 80 (80) T d1lk5a2 78 IFA 80 (80) T ss_dssp EEC T ss_pred CCC T ss_conf 469 No 6 >d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Probab=99.91 E-value=6e-25 Score=173.00 Aligned_cols=74 Identities=45% Similarity=0.807 Sum_probs=69.0 Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECC Q ss_conf 57887267872575899999986322148985037722588636257888899820798689899999962799686648 Q gi|254781054|r 129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHG 208 (231) Q Consensus 129 g~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~G 208 (231) |+|||||||+||+|.++.+.|++ +|+++++|+ ++++||+|||||||+||+|+.+.||.+|+.+|++|||||||| T Consensus 1 G~FPlPVEV~pf~~~~v~~~l~~----lg~~~~lR~--~~~~p~iTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~G 74 (74) T d1uj4a2 1 GRGPVPVEIVPFGYRATLKAIAD----LGGEPELRM--DGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETG 74 (74) T ss_dssp CSSCEEEEECSTTHHHHHHHHHH----TTCCEEECE--ETTEECCCTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEES T ss_pred CCCCCCEEECHHHHHHHHHHHHH----HCCCCEEEE--CCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEECCC T ss_conf 99871689827289999999998----499746965--599507951997899887899599999999997699876349 No 7 >d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Probab=99.91 E-value=5.5e-25 Score=173.25 Aligned_cols=72 Identities=33% Similarity=0.466 Sum_probs=67.6 Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECC Q ss_conf 57887267872575899999986322148985037722588636257888899820798689899999962799686648 Q gi|254781054|r 129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHG 208 (231) Q Consensus 129 g~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~G 208 (231) |+|||||||+||+|.++.+.|++ +|+++++|+ ||+|||||||+||+|.++.||.+|+.+|++|||||||| T Consensus 1 G~FPlPvEV~p~~~~~v~~~l~~----~g~~~~~R~------~~iTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~G 70 (72) T d1o8ba2 1 GKFPLPVEVIPMARSAVARQLVK----LGGRPEYRQ------GVVTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVG 70 (72) T ss_dssp TSSCEEEEECGGGHHHHHHHHHH----TTCEEEECT------TCCCTTSCEEEEEESCCBSCHHHHHHHHHTSTTEEEES T ss_pred CCCCCCEEEEHHHHHHHHHHHHH----CCCCCCCCC------CEEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECC T ss_conf 99875889826589999999999----389720176------36946998799887899799999999986799987058 Q ss_pred EE Q ss_conf 02 Q gi|254781054|r 209 LF 210 (231) Q Consensus 209 lF 210 (231) || T Consensus 71 LF 72 (72) T d1o8ba2 71 LF 72 (72) T ss_dssp EE T ss_pred CC T ss_conf 79 No 8 >d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Probab=99.89 E-value=7.6e-24 Score=166.17 Aligned_cols=70 Identities=31% Similarity=0.393 Sum_probs=65.6 Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCE Q ss_conf 78872678725758999999863221489850377225886362578888998207986898999999627996866480 Q gi|254781054|r 130 RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGL 209 (231) Q Consensus 130 ~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~Gl 209 (231) +|||||||+||+|.++.++|++ +|+++++|+ ||+|||||||+||+|..+.||.+|+.+|++||||||||| T Consensus 3 kFPlPVEV~pf~~~~v~~~l~~----lg~~~~lR~------~~iTDnGN~IlD~~~~~i~dp~~l~~~L~~IpGVVE~GL 72 (72) T d1m0sa2 3 TFPLPVEVIPMARSQVGRKLAA----LGGSPEYRE------GVVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTNGI 72 (72) T ss_dssp SSCEEEEECGGGHHHHHHHHHH----TTCEEEECT------TCCCTTSCEEEEEESCCCSCHHHHHHHHHTSTTEEEESE T ss_pred CCCEEEEECHHHHHHHHHHHHH----HCCCCCCCC------CCEECCCCEEEECCCCCCCCHHHHHHHHHCCCCEECCCC T ss_conf 8878089817289999999999----389862259------838209988997888986999999999987998872488 No 9 >d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Probab=97.31 E-value=0.0044 Score=37.15 Aligned_cols=130 Identities=21% Similarity=0.194 Sum_probs=88.2 Q ss_pred HHHHHHHHHHHHHHCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-----HHHHHHHHHHCCCCCCCCCCC-- Q ss_conf 89999999999983899789-9887917899999999998732870489618-----899999987315786551008-- Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIPS-----SRNTENFCKIHHIPLHSPEDV-- 75 (231) Q Consensus 4 ~~~K~~~a~~A~~~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-----S~~t~~~a~~~gi~~~~l~~~-- 75 (231) ++..+..++.+.++|++|++ +=.|--+||..++....++. ..+++.+.-| +.+....+.+.|||+.-..+. T Consensus 92 ~~a~~~i~~~~~~~i~~g~~ILT~~~S~tv~~~l~~a~~~g-k~~~V~v~EsrP~~eG~~la~~L~~~GI~vtlI~Dsa~ 170 (274) T d1vb5a_ 92 EEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERK-KRFKVILTESSPDYEGLHLARELEFSGIEFEVITDAQM 170 (274) T ss_dssp HHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTT-CCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHH T ss_conf 99999999986776599988998184389999999999869-97289996787655509999999874995178440489 Q ss_pred ----CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCCCCCCCEE Q ss_conf ----8007986330004766058831657777787998-610226999623035134557887267 Q gi|254781054|r 76 ----SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLGRGMLPIE 136 (231) Q Consensus 76 ----~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg~~plPVE 136 (231) .+.|+.+=|||-|..|+..+---|-..+- ++| ....-|+++++.+|+.+.+-...+|+| T Consensus 171 ~~~m~~~d~VivGAd~v~~nG~v~nkiGT~~~A--~~Ak~~~vP~~V~a~~~k~~~~~~~~~~~~~ 234 (274) T d1vb5a_ 171 GLFCREASIAIVGADMITKDGYVVNKAGTYLLA--LACHENAIPFYVAAETYKFHPTLKSGDVMLM 234 (274) T ss_dssp HHHHTTCSEEEECCSEECTTSCEEEETTHHHHH--HHHHHTTCCEEEECCGGGBCSSCCGGGCCCC T ss_pred HHHHHCCCEEEEEEEEEECCCCEEECCCHHHHH--HHHHHCCCCCEEECCCCCCCCCCCCCCCCEE T ss_conf 999640887999545995389877545055899--9999749985473144566777789980403 No 10 >d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=96.94 E-value=0.0096 Score=35.01 Aligned_cols=130 Identities=19% Similarity=0.040 Sum_probs=84.8 Q ss_pred HHHHHHHHHHHHHCCCCCEEEECC--CH-------HHHHHHHHHHHHHHCCCEEEE--EEC------HHHHHHHHHHCCC Q ss_conf 999999999998389978998879--17-------899999999998732870489--618------8999999873157 Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMGT--GS-------TAKEFMILLADKIANGFRVQV--IPS------SRNTENFCKIHHI 67 (231) Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlGt--GS-------Tv~~~i~~L~~~~~~~~~i~~--v~t------S~~t~~~a~~~gi 67 (231) +..+..++.+.++|++|++|--=. |+ |+...+....+ .|.+.++ .-| +..|...+.+.|| T Consensus 130 ~a~~~I~~~g~~~I~dg~~ILThcnsg~lat~~~gta~~~i~~a~~---~gk~~~V~v~EsrP~~qG~rl~a~~L~~~gi 206 (340) T d1t5oa_ 130 ERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVE---QGKEIRVIACETRPLNQGSRLTCWELMEDGI 206 (340) T ss_dssp HHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHH---TTCCCEEEEECCTTTTHHHHTHHHHHHHTTC T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH---CCCCCEEEEEECCCCCCCHHHHHHHHHHCCC T ss_conf 9999999998875179988999258852112236567877778630---7964058997426766750789999986578 Q ss_pred CCCCCCCC--------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEE Q ss_conf 86551008--------8007986330004766058831657777787998610226999623035134557887267872 Q gi|254781054|r 68 PLHSPEDV--------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQ 139 (231) Q Consensus 68 ~~~~l~~~--------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p 139 (231) |+.-..+. ..+|..|=|||-|..|+-+-|=|-..+. -.--....-|++.+..+|+........+|+|--| T Consensus 207 ~~t~i~dsa~~~~m~~~~vd~VivGad~v~~nG~~nkiGT~~~A--~~Ak~~~vP~~V~~~~~k~~~~~~~~~i~ie~~~ 284 (340) T d1t5oa_ 207 DVTLITDSMVGIVMQKGMVDKVIVGADRIVRDAVFNKIGTYTVS--VVAKHHNIPFYVAAPKATFDWERTAKDVVIEERP 284 (340) T ss_dssp CEEEECGGGHHHHHHTTCCSEEEECCSEEETTEEEEETTHHHHH--HHHHHTTCCEEEECCGGGBCTTCCGGGCCCCBCC T ss_pred CCEEEECHHHHHHHHCCCCCEEEECHHEEEHHCCCCCCCHHHHH--HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC T ss_conf 85797122578886416654576322105311251110588999--9999818857999514554656774550323588 No 11 >d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Probab=96.68 E-value=0.00065 Score=42.29 Aligned_cols=118 Identities=20% Similarity=0.149 Sum_probs=68.0 Q ss_pred HHHHHHHHHHHCCCCCEEEECC---CHHHHHHHHHHHHHHHCCCEE----------------------EE----EECHHH Q ss_conf 9999999998389978998879---178999999999987328704----------------------89----618899 Q gi|254781054|r 7 KRNAARRAIQYVVDGMTLGMGT---GSTAKEFMILLADKIANGFRV----------------------QV----IPSSRN 57 (231) Q Consensus 7 K~~~a~~A~~~v~~gmviGlGt---GSTv~~~i~~L~~~~~~~~~i----------------------~~----v~tS~~ 57 (231) |..-+++|+++|+|||+|++|. ..+-..++.+|.++....+.+ .. ...+.. T Consensus 4 K~~s~~eAv~~IkdGd~V~~gGf~~~g~P~al~~aL~~~~~k~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (219) T d1k6da_ 4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPE 83 (219) T ss_dssp SEECHHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHHTCCSEEEECSBCCCTTSTTHHHHHTTCEEEEEESBCTTCHH T ss_pred CCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHCCCCCCEECCCCCCCHH T ss_conf 40639999965999899998682675879999999998476776025457874731013455404344225365456756 Q ss_pred HHHHHHHCCCCCCCCC---------------------------------------------CCCEEEEEECCHHCCCCCC Q ss_conf 9999873157865510---------------------------------------------0880079863300047660 Q gi|254781054|r 58 TENFCKIHHIPLHSPE---------------------------------------------DVSSVDLSIDGFDEIDSRL 92 (231) Q Consensus 58 t~~~a~~~gi~~~~l~---------------------------------------------~~~~iDi~iDGaDevd~~l 92 (231) .+...++-.+...... ...++|++|=-|-..|.++ T Consensus 84 ~~~~~~~g~ie~~~~~~g~~~~~~ra~a~g~p~~~~~~~~Gt~~~~~~~~~~~~g~~~~~~~a~~~DVAiI~a~~aD~~G 163 (219) T d1k6da_ 84 TGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLG 163 (219) T ss_dssp HHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEEECCCCEEEEEEEEEEEETTC T ss_pred HHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCEECCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCC T ss_conf 78876269846998233478999998647998505403436512268732334787325640346888999850578998 Q ss_pred EEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCC Q ss_conf 58831657777787998610226999623035134 Q gi|254781054|r 93 RLIKGYGGALLREKIIAHAASRFIVIGDESKRVDF 127 (231) Q Consensus 93 ~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~ 127 (231) |+.=.+.+..+.+ ..|.+|++.|+-|++ .|+. T Consensus 164 N~~~~~~~~~~~~-~~a~Aa~~VIv~ve~--iv~~ 195 (219) T d1k6da_ 164 NLTYQLSARNFNP-LIALAADITLVEPDE--LVET 195 (219) T ss_dssp CEECCHHHHTTHH-HHHHHEEEEEEEEEE--EECT T ss_pred CEEECCCCCCCHH-HHHHHCCCEEEEEEE--EECC T ss_conf 6566155444179-999859979999967--8737 No 12 >d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]} Probab=96.40 E-value=0.0036 Score=37.66 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=70.0 Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCEE-------EEEE----CHHHHHHHHHHCC-C----- Q ss_conf 999999999983899789988791789999999999873-28704-------8961----8899999987315-7----- Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRV-------QVIP----SSRNTENFCKIHH-I----- 67 (231) Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i-------~~v~----tS~~t~~~a~~~g-i----- 67 (231) .+++.|..|++.+++|+++-+|.|.-. ..-.|+++.. ....+ -..| .|......+.... + T Consensus 7 ~~E~ma~~aArel~dg~~v~~GiGiP~--~a~~lA~~~~~pd~~l~~e~G~~g~~p~~~~~s~~d~~~~~~~~~~~~~~~ 84 (260) T d1poib_ 7 NKEMQAVTIAKQIKNGQVVTVGTGLPL--IGASVAKRVYAPDCHIIVESGLMDCSPVEVPRSVGDLRFMAHCGCIWPNVR 84 (260) T ss_dssp HHHHHHHHHHTTCCTTCEEECCSSHHH--HHHHHHHHTTCTTCEEEETTTEEEECCSSCCSSTTCHHHHTSEEEECCHHH T ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC T ss_conf 999999999985679999998673789--999998861399759997775327778777755565244235531267411 Q ss_pred ----CCCCCCCCCEEEEEECCHHCCCCCCEE--------------EECCCHHHHHHHHHHHHHCCEEEEEEHH--HCCCC Q ss_conf ----865510088007986330004766058--------------8316577777879986102269996230--35134 Q gi|254781054|r 68 ----PLHSPEDVSSVDLSIDGFDEIDSRLRL--------------IKGYGGALLREKIIAHAASRFIVIGDES--KRVDF 127 (231) Q Consensus 68 ----~~~~l~~~~~iDi~iDGaDevd~~l~l--------------IKGgGgAl~rEKiva~~a~~~I~i~D~s--K~v~~ 127 (231) .+.++-.-.++|++|=|+=|||..+|+ +-|.|||.- +++.|+++|++ .++ |+|+. T Consensus 85 ~~~~~~F~~~~~G~~d~~fLG~~QVD~~GNvN~s~iG~~~~p~~rl~G~GGa~d----i~~~a~~ii~~-~h~~r~fV~~ 159 (260) T d1poib_ 85 FVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG----IATYSNTIIMM-QHEKRRFMNK 159 (260) T ss_dssp HHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH----HHHHSCEEEEC-CCCTTTBCSS T ss_pred CCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCH----HHHCCCEEEEE-CCCCCCCCCC T ss_conf 244888899856886469734200583223332022566677756668876113----55157457984-4676435642 Q ss_pred CC Q ss_conf 55 Q gi|254781054|r 128 LG 129 (231) Q Consensus 128 Lg 129 (231) +. T Consensus 160 vd 161 (260) T d1poib_ 160 ID 161 (260) T ss_dssp CS T ss_pred CC T ss_conf 33 No 13 >d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Probab=95.99 E-value=0.0052 Score=36.65 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=43.7 Q ss_pred HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC---------H----HHHHHHHHHC Q ss_conf 78999999999998----38997899887917899999999998732870489618---------8----9999998731 Q gi|254781054|r 3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS---------S----RNTENFCKIH 65 (231) Q Consensus 3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t---------S----~~t~~~a~~~ 65 (231) .+++++.+|+.|++ .++++++||+++|+|...++++|... ...++++|+- + .-...+++.+ T Consensus 33 ~~~~~~~l~~~aA~~l~~~l~~~~~iGvswG~Tl~~~~~~l~~~--~~~~~~vv~l~Gg~~~~~~~~~~~~i~~~lA~~~ 110 (262) T d2gnpa1 33 PTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK--SVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKF 110 (262) T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC--CCSSCEEEESBCCCTTSCGGGSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 67899999999999999847789889992788899999970765--6677459940577677766568999999999994 Q ss_pred CCCCCCC Q ss_conf 5786551 Q gi|254781054|r 66 HIPLHSP 72 (231) Q Consensus 66 gi~~~~l 72 (231) |-+...+ T Consensus 111 ~~~~~~l 117 (262) T d2gnpa1 111 HGECTFM 117 (262) T ss_dssp TCEECCC T ss_pred CCCCCCC T ss_conf 9970044 No 14 >d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Probab=95.96 E-value=0.0044 Score=37.11 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=43.9 Q ss_pred HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------------H-HHHHHHHHH Q ss_conf 78999999999998----38997899887917899999999998732870489618-------------8-999999873 Q gi|254781054|r 3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------------S-RNTENFCKI 64 (231) Q Consensus 3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------------S-~~t~~~a~~ 64 (231) .++.++.+++.|++ +++++++||+++|+|+..+++.|.+.... .++.+|+. + ..+...+.+ T Consensus 28 ~~~~~~~lg~aAA~~l~~~l~~~~~igvswG~T~~~~~~~l~~~~~~-~~~~~v~l~G~~~~~~~~~~~~~~~~~~~a~~ 106 (255) T d3efba1 28 EETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQS-RQLICVPIIGGPSGKLESRYHVNTLTYSAAAK 106 (255) T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCCSSC-CCCEEEESBCBCTTSSCGGGCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCC-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 06899999999999999867899889993868899999982200346-78169981467677757877878999999999 Q ss_pred CCCCCCCC Q ss_conf 15786551 Q gi|254781054|r 65 HHIPLHSP 72 (231) Q Consensus 65 ~gi~~~~l 72 (231) ++-+...+ T Consensus 107 ~~~~~~~l 114 (255) T d3efba1 107 LKGESHLA 114 (255) T ss_dssp TTCEECCC T ss_pred HCCCCCCC T ss_conf 28964477 No 15 >d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Probab=95.87 E-value=0.059 Score=30.11 Aligned_cols=131 Identities=20% Similarity=0.180 Sum_probs=86.9 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEC--CCH-------HHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCC Q ss_conf 99999999999838997899887--917-------899999999998732870489618--------8999999873157 Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMG--TGS-------TAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHI 67 (231) Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlG--tGS-------Tv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi 67 (231) +..+..++.+.+++++|.+|=-= ||+ |+...+....+ .|.+..++.+ +.-|+..+.+.|| T Consensus 129 ~~~~~Ig~~g~~lI~~g~~ILThcnsg~lAt~~~gta~~~~~~a~~---~g~~~~v~v~EsrP~~qG~~lta~~L~~~gi 205 (340) T d1t9ka_ 129 EVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVE---SGKRIRVFADETRPYLQGARLTAWELMKDGI 205 (340) T ss_dssp HHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHH---TTCCEEEEEECCTTTTHHHHTHHHHHHTTTC T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCHHHHHHHHHHCCC T ss_conf 9999889998887348987998238751000220225667788763---5944799980489877427887778875598 Q ss_pred CCCCCCC--------CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEE Q ss_conf 8655100--------8800798633000476605883165777778799861022699962303513455-788726787 Q gi|254781054|r 68 PLHSPED--------VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEID 138 (231) Q Consensus 68 ~~~~l~~--------~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~ 138 (231) |+.-..+ ...+|..+=|||-|..|+..+--=|-..+- -+-.....-|++++..+|+.+..- ...+|+|-- T Consensus 206 ~~t~I~Dsa~~~~m~~~~vd~VivGad~v~~nG~v~nkiGT~~~A-~~A~~~~vP~~V~a~~~k~~~~~~~~~~~~ie~r 284 (340) T d1t9ka_ 206 EVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEER 284 (340) T ss_dssp EEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBC T ss_pred CEEEEECCHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCHHHHH-HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 469972430666653055446875000103689887752589998-9998648747999522576877887470565356 Q ss_pred E Q ss_conf 2 Q gi|254781054|r 139 Q 139 (231) Q Consensus 139 p 139 (231) + T Consensus 285 ~ 285 (340) T d1t9ka_ 285 R 285 (340) T ss_dssp C T ss_pred C T ss_conf 8 No 16 >d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Probab=95.70 E-value=0.0083 Score=35.40 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=45.4 Q ss_pred HHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEE------------CHHHHHHHHHHCCC Q ss_conf 8999999999998----3899789988791789999999999873287048961------------88999999873157 Q gi|254781054|r 4 LQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIP------------SSRNTENFCKIHHI 67 (231) Q Consensus 4 ~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~------------tS~~t~~~a~~~gi 67 (231) ++.++.+|+.|++ +++++++||+++|+|+..+++.|.... ...++.+|+ ++.-....+.++|- T Consensus 33 ~~~~~~l~~aaA~~L~~~l~~~~~igvswG~T~~~~~~~l~~~~-~~~~~~~V~l~G~~~~~~~~~~~~i~~~la~~~~~ 111 (250) T d2okga1 33 PWVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDS-KNRELLFVPARGGLGEDVKNQANTICAHMAEKASG 111 (250) T ss_dssp THHHHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCT-TCCEEEEEESEEECC---CCHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCC-CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 69999999999999998667998899958789999999841105-68872899821788877675999999999987299 Q ss_pred CCCCC Q ss_conf 86551 Q gi|254781054|r 68 PLHSP 72 (231) Q Consensus 68 ~~~~l 72 (231) +...+ T Consensus 112 ~~~~l 116 (250) T d2okga1 112 TYRLL 116 (250) T ss_dssp EECCC T ss_pred CEEEE T ss_conf 65644 No 17 >d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]} Probab=95.39 E-value=0.0094 Score=35.08 Aligned_cols=170 Identities=12% Similarity=0.106 Sum_probs=83.1 Q ss_pred HHHHHHHHHHHHHH----HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEEC------------HHHHHHHHHHC Q ss_conf 78999999999998----3899789988-7917899999999998732870489618------------89999998731 Q gi|254781054|r 3 ALQMKRNAARRAIQ----YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPS------------SRNTENFCKIH 65 (231) Q Consensus 3 ~~~~K~~~a~~A~~----~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~t------------S~~t~~~a~~~ 65 (231) .++..+.+++.|++ +++++++||+ |.|+|+..+++++........++++||. ...+..+|+++ T Consensus 31 ~~~~~~~v~~~aA~~L~~~l~~~~~igv~~wG~Tl~~~~~~l~~~~~~~~~~~vV~l~G~~~~~~~~~~~~i~~~lA~~~ 110 (258) T d2r5fa1 31 EESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLL 110 (258) T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHC T ss_conf 57999999999999999862659879998368089999987163556678805995678878777758999999999873 Q ss_pred CCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHH----HHHHCCEEEEEEHHHCCCCCCCCCCCEEE-EEC Q ss_conf 5786551008800798633000476605883165777778799----86102269996230351345578872678-725 Q gi|254781054|r 66 HIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKII----AHAASRFIVIGDESKRVDFLGRGMLPIEI-DQF 140 (231) Q Consensus 66 gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiv----a~~a~~~I~i~D~sK~v~~Lg~~plPVEV-~p~ 140 (231) |-+...+ ...+++|...+-+ .+..|+.+ ..+.+--+.++ -+|.. -+.-. .+. T Consensus 111 ~~~~~~l----~aP~~~~s~~~~~-----------~l~~~~~i~~vl~~~~~~dial~-------GIG~~-~~~~~~~~~ 167 (258) T d2r5fa1 111 NCPAFLL----PSQSIEQSVESKQ-----------RIVEMEEVKEVLHRFDSITLAIV-------GIGEL-EPSQLLRNS 167 (258) T ss_dssp TSCEECC----CCC---------------------CCHHHHHHHHHHHHTTTCCEEEE-------CCEEC-C-------- T ss_pred CCCEEEC----CCCCCCCCHHHHH-----------HHHHCHHHHHHHHHHHCCCEEEE-------ECCCC-CCCCEEECC T ss_conf 9936703----6722368999999-----------99858469999999825999999-------23788-765411115 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCC-C-CCCHHHHHHHHHCCCCEEE Q ss_conf 7589999998632214898503772258863625788889982079-8-6898999999627996866 Q gi|254781054|r 141 GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFG-F-IPDPQIISGELCNIPGVIE 206 (231) Q Consensus 141 ~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~-~-i~dp~~le~~L~~IpGVVe 206 (231) +.......++.+ ...|.-.++ .+.|+..+|+.+- ..+. . +.- .++ +|+++|-||. T Consensus 168 ~~~~~~~~~~~l-~~~gAvGdi------~~~f~d~~G~~v~-~~~~~r~i~i--~l~-~l~~i~~~I~ 224 (258) T d2r5fa1 168 GNYYTEDMLRVL-AERGAVGDI------CLRYFDAQGKPVL-EEDEEFVVSM--GLG-KLRSINRVLG 224 (258) T ss_dssp -----------C-TTTTCCEEE------TTEEECTTSCBC--------CEEC--CHH-HHHTSSEEEE T ss_pred CCCCCHHHHHHH-HHCCEEEHH------HHHHCCCCCCCCC-CCCCCCEEEC--CHH-HHCCCCCEEE T ss_conf 788999999999-988902527------6434167899976-6654314316--878-9656885899 No 18 >d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Probab=95.04 E-value=0.0094 Score=35.09 Aligned_cols=69 Identities=7% Similarity=0.011 Sum_probs=45.0 Q ss_pred HHHHHHHHHHHHH----HCCCCC-EEEECCCHHHHHHHHHHHHHHHCCCEEEEEE------------CHHHHHHHHHHCC Q ss_conf 8999999999998----389978-9988791789999999999873287048961------------8899999987315 Q gi|254781054|r 4 LQMKRNAARRAIQ----YVVDGM-TLGMGTGSTAKEFMILLADKIANGFRVQVIP------------SSRNTENFCKIHH 66 (231) Q Consensus 4 ~~~K~~~a~~A~~----~v~~gm-viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~------------tS~~t~~~a~~~g 66 (231) ++..+.+|+.|.+ .+++|+ +||+++|||...+++.|........++++|+ +......++...+ T Consensus 27 ~~~~~~l~~~aa~~L~~~l~~~~~~ig~s~G~T~~~~~~~l~~~~~~~~~~~~v~l~G~~~~~~~~~~~~~~~~la~~~~ 106 (247) T d2o0ma1 27 KKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTG 106 (247) T ss_dssp THHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 99999999999999998701498699996777999999971402577674389944657888877689999999997619 Q ss_pred CCCCCC Q ss_conf 786551 Q gi|254781054|r 67 IPLHSP 72 (231) Q Consensus 67 i~~~~l 72 (231) .+...+ T Consensus 107 ~~~~~l 112 (247) T d2o0ma1 107 GNYRAL 112 (247) T ss_dssp CEECCC T ss_pred CCHHEE T ss_conf 970004 No 19 >d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Probab=94.57 E-value=0.036 Score=31.42 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=74.7 Q ss_pred HHHHHHHHHHHHCCCCCEEEEC--CCH-HHHHHHHHHHHHHHC-CCEEEEE-----------------------E--CHH Q ss_conf 9999999999838997899887--917-899999999998732-8704896-----------------------1--889 Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMG--TGS-TAKEFMILLADKIAN-GFRVQVI-----------------------P--SSR 56 (231) Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlG--tGS-Tv~~~i~~L~~~~~~-~~~i~~v-----------------------~--tS~ 56 (231) .|..-|.+|+.+|++|+.|++| ||+ +-..++++|+++.++ .+.+... + ++. T Consensus 11 ~Kl~saeeAv~~Ik~G~~V~~gGf~~ag~P~~l~~aLa~r~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 90 (221) T d2g39a1 11 DKVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDS 90 (221) T ss_dssp GGBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCH T ss_pred HHCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCH T ss_conf 62788999997489969999878887778489999999987518844899853666753322121148546451066598 Q ss_pred HHHHHHHHCCCCCCC---------CCC--CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCC Q ss_conf 999998731578655---------100--880079863300047660588316577777879986102269996230351 Q gi|254781054|r 57 NTENFCKIHHIPLHS---------PED--VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRV 125 (231) Q Consensus 57 ~t~~~a~~~gi~~~~---------l~~--~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v 125 (231) ..+.+..+-.+...+ +.+ ...+|+++=-+=..|.++|+.=|- +.-..+-.+.+|++.|+-+.+.--. T Consensus 91 ~~Rk~i~~G~~~~~p~~ls~~~~~~r~g~~~~iDVaii~vs~~De~G~~~~g~--s~~~~~~~~~~A~~VIvEVN~~~P~ 168 (221) T d2g39a1 91 TLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTT--SVGNSASFAIFAKQVIVEINLAHST 168 (221) T ss_dssp HHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCS--BCBTHHHHHHHSSEEEEEEETTSCG T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEC--CCCHHHHHHHHCCEEEEEECCCCCC T ss_conf 99999877976899664777799998168889848999986378981497606--5162999998689899998899996 Q ss_pred CCCC Q ss_conf 3455 Q gi|254781054|r 126 DFLG 129 (231) Q Consensus 126 ~~Lg 129 (231) ..+| T Consensus 169 ~~~g 172 (221) T d2g39a1 169 NLEG 172 (221) T ss_dssp GGTT T ss_pred CCCC T ss_conf 5578 No 20 >d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Probab=93.33 E-value=0.23 Score=26.43 Aligned_cols=110 Identities=20% Similarity=0.201 Sum_probs=65.7 Q ss_pred CHHHHHHHHHHHHHHHC------CCCCEEEECCCHHHHHHHHHHHHHHH-CCCEEEE----EECHHHHHHHHHHCCC--- Q ss_conf 87899999999999838------99789988791789999999999873-2870489----6188999999873157--- Q gi|254781054|r 2 DALQMKRNAARRAIQYV------VDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQV----IPSSRNTENFCKIHHI--- 67 (231) Q Consensus 2 ~~~~~K~~~a~~A~~~v------~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i~~----v~tS~~t~~~a~~~gi--- 67 (231) ......++.|+.++++| +||.++=+|-|+.-.....+|.++.+ .+.+... ++.+.. .+.+.|. T Consensus 6 t~~P~~~~Ia~~~A~~I~~~~~i~DG~tlQlGiG~ip~AV~~~L~~~~~dlgih~e~~~ggitd~~~---~L~~~G~i~~ 82 (269) T d1xr4a2 6 SSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITGTMV---DLHEKGLIKA 82 (269) T ss_dssp CCCHHHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECHHHH---HHHHTTSBSC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHH---HCCCCCCEEE T ss_conf 8986999999999998764576889878996759899999998676454664588787056376301---0260555440 Q ss_pred -------------------CCCC------------CCCCCEEEEEECCHHCCCCCCE----------EEECCCHHHHHHH Q ss_conf -------------------8655------------1008800798633000476605----------8831657777787 Q gi|254781054|r 68 -------------------PLHS------------PEDVSSVDLSIDGFDEIDSRLR----------LIKGYGGALLREK 106 (231) Q Consensus 68 -------------------~~~~------------l~~~~~iDi~iDGaDevd~~l~----------lIKGgGgAl~rEK 106 (231) +-.. ...++++|++|-||=|||..+| ++-|.||..-. T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~y~n~~~~i~~~~~ldvsInsAlEVDl~Gnvn~~~~~~g~~~sG~GG~~Df-- 160 (269) T d1xr4a2 83 LLDTQSFDGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDT-- 160 (269) T ss_dssp EEEEEECSHHHHHHHHHCTTEEECCHHHHTCTTCSCCGGGGCSEEEECCSEECTTCCEECSBCTTSCBCSBCTTHHHH-- T ss_pred CCCCEEECCHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHH-- T ss_conf 356346423658788739984798431004863666534872189851004125786578872598502797657787-- Q ss_pred HHHHHHCCEEEE Q ss_conf 998610226999 Q gi|254781054|r 107 IIAHAASRFIVI 118 (231) Q Consensus 107 iva~~a~~~I~i 118 (231) +..|+.-++. T Consensus 161 --~rGA~~si~~ 170 (269) T d1xr4a2 161 --AAGADLTIIT 170 (269) T ss_dssp --HHHSSEEEEE T ss_pred --HCCCEEEEEE T ss_conf --4585268874 No 21 >d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]} Probab=93.12 E-value=0.2 Score=26.77 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=64.1 Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH--HCCCE-------EEEEECHHHHHHHHHHCC--C---CCCC Q ss_conf 99999999998389978998879178999999999987--32870-------489618899999987315--7---8655 Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKI--ANGFR-------VQVIPSSRNTENFCKIHH--I---PLHS 71 (231) Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~--~~~~~-------i~~v~tS~~t~~~a~~~g--i---~~~~ 71 (231) .++..|+.|+.+++||+++=+|.|-- ..+-.++++. ..... +...|.+...--.+.... + ...+ T Consensus 5 ~~~~Ia~raA~el~dG~~v~lGiGiP--~~v~~~a~~~~~~~~v~~~~E~G~~gg~~~~~~~~~~~~~~~~~~~~~~~f~ 82 (247) T d2ahua1 5 QRKLVARRALFEMRKGAVGNVGVGIA--DGIGLVAREEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQFD 82 (247) T ss_dssp HHHHHHHHHHTTCCTTCEEEECSSTT--TTHHHHHHHHTCGGGSEEBCTTSEESCBCC-----CCCBSCSEECCHHHHHH T ss_pred HHHHHHHHHHHHCCCCCEEEECCCHH--HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCEEEECCCCEEE T ss_conf 89999999998678999999766689--9999999763778751686637515881256653033304236734601034 Q ss_pred CCCCCEEEEEECCHHCCCCCCEE--------EECCCHHHHHHHHHHHHHCCEEEEEEHH Q ss_conf 10088007986330004766058--------8316577777879986102269996230 Q gi|254781054|r 72 PEDVSSVDLSIDGFDEIDSRLRL--------IKGYGGALLREKIIAHAASRFIVIGDES 122 (231) Q Consensus 72 l~~~~~iDi~iDGaDevd~~l~l--------IKGgGgAl~rEKiva~~a~~~I~i~D~s 122 (231) .-...++|++|=||=|||..+|+ +.|-||+.-- ++.|++.+++...+ T Consensus 83 ~~~~g~~dv~~lga~QVD~~GnvN~s~iG~~~~G~GG~~D~----~~gA~~~i~~~~~~ 137 (247) T d2ahua1 83 FYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDI----SATSKKIIFCGTLT 137 (247) T ss_dssp HHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHHHH----HTTCSEEEEECCSE T ss_pred EEECCCEEEEEECHHHCCCCCCCCHHCCCCCCCCCCCCCHH----HCCCCEEEECCCCC T ss_conf 57349735999553443801154401028865685443304----30764389824632 No 22 >d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Probab=89.11 E-value=0.71 Score=23.41 Aligned_cols=105 Identities=19% Similarity=0.078 Sum_probs=68.0 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEE--C------HHHHHHHHHHCCCCCCCCCCC--------CEEEEEECCHHCCCCCCEE Q ss_conf 89999999999873287048961--8------899999987315786551008--------8007986330004766058 Q gi|254781054|r 31 TAKEFMILLADKIANGFRVQVIP--S------SRNTENFCKIHHIPLHSPEDV--------SSVDLSIDGFDEIDSRLRL 94 (231) Q Consensus 31 Tv~~~i~~L~~~~~~~~~i~~v~--t------S~~t~~~a~~~gi~~~~l~~~--------~~iDi~iDGaDevd~~l~l 94 (231) |+...+....+ .|....++. | +.-|...+.+.|||+.-..+. .++|..|=|||-|..|+.+ T Consensus 188 tal~~i~~a~~---~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~Dsa~~~~m~~~~v~~VivGad~v~~nG~v 264 (374) T d2a0ua1 188 TALGVVRQLFY---DGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDT 264 (374) T ss_dssp SHHHHHHHHHH---TTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCE T ss_pred HHHHHHHHHHH---CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCEEEEEECCEEEEECCCE T ss_conf 24677678997---698617998046433464689999998616771899545256662056425898523189846978 Q ss_pred EECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEEE Q ss_conf 83165777778799861022699962303513455-7887267872 Q gi|254781054|r 95 IKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEIDQ 139 (231) Q Consensus 95 IKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~p 139 (231) +--=|-..+= -.--....-|++.+..+|+..... ...+|+|--+ T Consensus 265 ~nkiGT~~~A-~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~ 309 (374) T d2a0ua1 265 ANKIGTYNLA-VSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEERE 309 (374) T ss_dssp EEETTHHHHH-HHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCC T ss_pred EECCCHHHHH-HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC T ss_conf 8624649999-99997499889991156427677997756466789 No 23 >g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate isomerase Ypr118W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=88.70 E-value=0.76 Score=23.23 Aligned_cols=118 Identities=20% Similarity=0.130 Sum_probs=72.5 Q ss_pred CCCCEEEEC--CCH-------HHHHHHHHHHHHH-----HCCCEEEEEEC-H-------HHHHHHHHHCCCCCCCCCCCC Q ss_conf 997899887--917-------8999999999987-----32870489618-8-------999999873157865510088 Q gi|254781054|r 19 VDGMTLGMG--TGS-------TAKEFMILLADKI-----ANGFRVQVIPS-S-------RNTENFCKIHHIPLHSPEDVS 76 (231) Q Consensus 19 ~~gmviGlG--tGS-------Tv~~~i~~L~~~~-----~~~~~i~~v~t-S-------~~t~~~a~~~gi~~~~l~~~~ 76 (231) ++|++|=-- ||+ |+.-.++.+.++. +.+++.+++.+ | ..|+..+.+.|||+.-..+.. T Consensus 172 ~dg~~ILThCnsg~Lat~~~GTAl~vi~~~~~~~l~~a~~~~k~f~V~v~EsRP~~qG~rl~a~~L~~~gI~~t~i~dsa 251 (402) T g1w2w.1 172 KDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKCPRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSS 251 (402) T ss_dssp CSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHHHHCCCEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGG T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECHH T ss_conf 87632576316543211121468899999987555456642844799995788744217888899986587708974056 Q ss_pred ----------EEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCC-CCCCCEEEE Q ss_conf ----------007986330004766058831657777787998-61022699962303513455-788726787 Q gi|254781054|r 77 ----------SVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLG-RGMLPIEID 138 (231) Q Consensus 77 ----------~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~ 138 (231) .+|..|=|||-|-.|+.++-==|-+.+= ++| ....-|++.+..+|+....- ..-+|+|-- T Consensus 252 ~~~~m~~~~~~vd~V~vGAd~i~~nG~v~nkiGT~~~A--~~Ak~~~vPv~V~a~~~k~~~~~~~~~~i~iE~r 323 (402) T g1w2w.1 252 IAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLA--VICKQFGIKFFVVAPKTTIDNVTETGDDIIVEER 323 (402) T ss_dssp HHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHH--HHHHHHTCEEEEECCGGGBCSSCCSGGGCCCCBC T ss_pred HHHHHHHCCCCCCEEEECCCEECCCCCEEEHHHHHHHH--HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC T ss_conf 89998634756436997132330688776668788899--9999829966998146653767899561346147 No 24 >d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Probab=88.60 E-value=0.41 Score=24.90 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=59.6 Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHH---------HHHHHH--HHCCC------C Q ss_conf 999999999983899789988791789999999999873287048961889---------999998--73157------8 Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSR---------NTENFC--KIHHI------P 68 (231) Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~---------~t~~~a--~~~gi------~ 68 (231) ..+..|+.|+++++||.++=+|.| --......| ++..++.....+. ...... ...+. + T Consensus 2 v~e~Ia~~aA~~i~DG~~v~~GiG-iP~~va~~l----~~~~~~~l~~E~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (221) T d1ooya1 2 VRERIIKRAALEFEDGMYANLGIG-IPLLASNFI----SPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLP 76 (221) T ss_dssp HHHHHHHHHGGGCCTTEEEEECTT-HHHHHGGGS----CTTSCEEEEETTTEEEECCCCCGGGCCTTCBCTTSCBCCEEE T ss_pred HHHHHHHHHHHHCCCCCEEEECCC-HHHHHHHHH----HHCCCCEEEECCCEEECCCCCCCCCCCCCCCCHHHHHCCCCC T ss_conf 899999999986789999997748-899999875----026760478537523214334446534553102232143364 Q ss_pred ---CC------CCCCCCEEEEEECCHHCCCCCCEE---------EECCCHHHHHHHHHHHHHCCEEEEEEHH Q ss_conf ---65------510088007986330004766058---------8316577777879986102269996230 Q gi|254781054|r 69 ---LH------SPEDVSSVDLSIDGFDEIDSRLRL---------IKGYGGALLREKIIAHAASRFIVIGDES 122 (231) Q Consensus 69 ---~~------~l~~~~~iDi~iDGaDevd~~l~l---------IKGgGgAl~rEKiva~~a~~~I~i~D~s 122 (231) .. ..-....+|++|-|+-|||..+|. +-|.||+.- ++..+++.+++.-++ T Consensus 77 ~~~~~~~~~~~~~~~~g~~dva~~ga~qvD~~G~in~~~~p~~~~~G~GG~~d----~~~~a~~~~~~~~~~ 144 (221) T d1ooya1 77 GASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMD----LVSSAKTKVVVTMEH 144 (221) T ss_dssp EEEECCHHHHHHHHHTTCSSEEEECCSEEETTCCEECSCCSSSCCCCCTTHHH----HTCCTTSEEEEECCS T ss_pred HHHHCCCCCCHHHHHCCCCCEEEECHHHHCCHHEEEEEECCCCCCCCCCCCHH----HHHCCCCEEEEEEEC T ss_conf 34313444443465457764698354561511005545128720257344202----533268417997301 No 25 >d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]} Probab=86.68 E-value=0.48 Score=24.46 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=33.4 Q ss_pred HHHHHHHHHHCCCCCEEEECCCH----HHHHHHHHHHHHHH-C-C-CEEEEEECH Q ss_conf 99999999838997899887917----89999999999873-2-8-704896188 Q gi|254781054|r 8 RNAARRAIQYVVDGMTLGMGTGS----TAKEFMILLADKIA-N-G-FRVQVIPSS 55 (231) Q Consensus 8 ~~~a~~A~~~v~~gmviGlGtGS----Tv~~~i~~L~~~~~-~-~-~~i~~v~tS 55 (231) -+.+++|+++|+|||+|++|... +...++.+|.++-+ + + .+++++..+ T Consensus 12 v~S~~eAv~~I~DG~ti~igGf~~~~~~P~~li~al~~r~~~~~~~kdLtli~~~ 66 (273) T d2ahua2 12 VLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPT 66 (273) T ss_dssp BCCHHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESS T ss_pred EEEHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC T ss_conf 6359999831999899999362677769899999999988722898761899446 No 26 >d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Probab=86.27 E-value=0.14 Score=27.75 Aligned_cols=46 Identities=24% Similarity=0.159 Sum_probs=29.1 Q ss_pred EEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC Q ss_conf 00798633000476605883165777778799861022699962303513 Q gi|254781054|r 77 SVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231) Q Consensus 77 ~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231) ++|++|==|...|..+|+.--| .. ..-...|.+|++.|+.|++ .|+ T Consensus 171 ~~DvAlIha~~AD~~GNv~~~g-~~-~~~~~~A~Aa~~vIV~vE~--IV~ 216 (317) T d1poia_ 171 QVDVAIIHAQQASPDGTVRIWG-GK-FQDVDIAEAAKYTIVTCEE--IIS 216 (317) T ss_dssp CCSEEEEEEEEECTTCCEECCS-CC-TTHHHHHHHSSEEEEEEEE--ECC T ss_pred CCCEEEEEECCCCCCCCEEEEC-CC-CCCHHHHHCCCCEEEEEEE--EEE T ss_conf 8879999802228997189976-67-7899998659951999999--985 No 27 >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Probab=81.80 E-value=1.2 Score=22.08 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=37.1 Q ss_pred HHHHHHHH--HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC Q ss_conf 99999998--3899789988-791789999999999873287048961889999998731578 Q gi|254781054|r 9 NAARRAIQ--YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231) Q Consensus 9 ~~a~~A~~--~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231) ..|..|++ .+++|..|-+ |.++.+..+.-.+++. .|.++.++.+|..-...++++|.. T Consensus 14 ~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~--~G~~vi~~~~~~~~~~~~~~lGa~ 74 (171) T d1iz0a2 14 LTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARA--MGLRVLAAASRPEKLALPLALGAE 74 (171) T ss_dssp HHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSGGGSHHHHHTTCS T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9999999985999999899995664321332211112--333332233554111111234440 No 28 >d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Probab=80.57 E-value=0.9 Score=22.75 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=28.2 Q ss_pred HHHHHHHCCCCCEEEECCCHH---HHHHHHHHHHHHHCCCEEEEEE Q ss_conf 999998389978998879178---9999999999873287048961 Q gi|254781054|r 11 ARRAIQYVVDGMTLGMGTGST---AKEFMILLADKIANGFRVQVIP 53 (231) Q Consensus 11 a~~A~~~v~~gmviGlGtGST---v~~~i~~L~~~~~~~~~i~~v~ 53 (231) |..|+++|+||++|++|+-.. -..++.+|.++-.. +++.+. T Consensus 7 a~EAv~~I~DG~~i~~gGf~~~~~P~ali~el~r~~~~--~Lt~i~ 50 (242) T d1ooya2 7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVK--ELTAVS 50 (242) T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHHCCC--SEEEEE T ss_pred HHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCC--CCEEEE T ss_conf 99998149994999987754737899999999974999--878996 No 29 >d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]} Probab=77.39 E-value=1.1 Score=22.18 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=4.0 Q ss_pred EEECCCHHHH Q ss_conf 9887917899 Q gi|254781054|r 24 LGMGTGSTAK 33 (231) Q Consensus 24 iGlGtGSTv~ 33 (231) -|..+|.|.. T Consensus 71 CGvA~~~~~~ 80 (295) T d1zcza2 71 CGAAIGEDKV 80 (295) T ss_dssp EEEEECSCHH T ss_pred CCCCCCCCCC T ss_conf 6655355521 No 30 >d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]} Probab=73.05 E-value=2.2 Score=20.37 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=7.5 Q ss_pred ECCCHHHHHHHHHHHH Q ss_conf 8791789999999999 Q gi|254781054|r 26 MGTGSTAKEFMILLAD 41 (231) Q Consensus 26 lGtGSTv~~~i~~L~~ 41 (231) |.||+|+..+|+.|.+ T Consensus 135 lATG~s~~~ai~~L~~ 150 (210) T d1o5oa_ 135 LATGVSSIKAIEILKE 150 (210) T ss_dssp ESSSHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHH T ss_conf 5568628999999985 No 31 >d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=72.46 E-value=3 Score=19.51 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=48.2 Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHH-HHHHHCCCCEEECC Q ss_conf 72678725758999999863221489850377225886362578888998207986898999-99962799686648 Q gi|254781054|r 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQII-SGELCNIPGVIEHG 208 (231) Q Consensus 133 lPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~l-e~~L~~IpGVVe~G 208 (231) +=|++.|.....+.++|.++ |+++.. ..+|-..++++-+...+..+..++ ...|..+|||..+- T Consensus 7 i~i~v~~~~~~~v~~~l~~~-------peV~~~-----~~vtG~~D~~~~v~~~d~~~l~~~l~~~i~~~~gV~~~~ 71 (80) T d1i1ga2 7 TGVDTKPEKLFEVAEKLKEY-------DFVKEL-----YLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKVC 71 (80) T ss_dssp EEEEECGGGHHHHHHHHHHS-------TTEEEE-----CCCSSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEE T ss_pred EEEEECCCCHHHHHHHHHCC-------CCEEEE-----EEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 99998717599999998769-------998689-----989799989999997999999999986641599977999 No 32 >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Probab=70.71 E-value=3.3 Score=19.27 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=41.3 Q ss_pred HHHHHHHHH---HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC Q ss_conf 999999998---3899789988-791789999999999873287048961889999998731578 Q gi|254781054|r 8 RNAARRAIQ---YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231) Q Consensus 8 ~~~a~~A~~---~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231) -..|..|+. .+++|+.|=+ |.++-+-.+.-.|++. .|.++.++.+|..-...++++|-. T Consensus 14 glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~--~Ga~vi~~~~~~~~~~~~~~~Ga~ 76 (182) T d1v3va2 14 GLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQIGFD 76 (182) T ss_dssp HHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHHH T ss_conf 999999999986999998899996788436999999870--698799967877899999752001 No 33 >d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} Probab=52.34 E-value=7.1 Score=17.20 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=30.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH Q ss_conf 99789988791789999999999873287048961889999998 Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC 62 (231) Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a 62 (231) ++..+||+|+|++.... ...|.....|.....|||+.-+..-+ T Consensus 102 r~d~IiaiGGG~v~D~a-k~~A~~y~rgi~~i~vPTtlla~~Da 144 (389) T d1sg6a_ 102 RDTVVIALGGGVIGDLT-GFVASTYMRGVRYVQVPTTLLAMVDS 144 (389) T ss_dssp TTCEEEEEESHHHHHHH-HHHHHHGGGCCEEEEEECSHHHHHTT T ss_pred CCCEEEEECCCHHHHHH-HHHHHHHHCCCCEEEECCCHHCCCCC T ss_conf 77569996563477889-99999985587636731402125665 No 34 >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Probab=51.10 E-value=7.4 Score=17.08 Aligned_cols=88 Identities=13% Similarity=0.196 Sum_probs=48.6 Q ss_pred CEEE-ECCCHHHHH-HHHHHHHHHHCCCEEEEEECH-H--HHHHHHHHCCCCCCCC------C--CCCEEEEEECCHHCC Q ss_conf 8998-879178999-999999987328704896188-9--9999987315786551------0--088007986330004 Q gi|254781054|r 22 MTLG-MGTGSTAKE-FMILLADKIANGFRVQVIPSS-R--NTENFCKIHHIPLHSP------E--DVSSVDLSIDGFDEI 88 (231) Q Consensus 22 mviG-lGtGSTv~~-~i~~L~~~~~~~~~i~~v~tS-~--~t~~~a~~~gi~~~~l------~--~~~~iDi~iDGaDev 88 (231) +.+| +|||..... +++.|. ......+..+.++ . .....++++|++...- + +...+|+.|+-. T Consensus 5 irvaIIGaG~ig~~~~~~~l~--~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~AT--- 79 (157) T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLR--NAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDAT--- 79 (157) T ss_dssp EEEEEECCSHHHHHHHHHHHH--HCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECS--- T ss_pred CEEEEECCCHHHHHHHHHHHH--HCCCCEEEEEEECCHHCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECC--- T ss_conf 679998685999999999996--198655999985533203103566539740005615665024555468899827--- Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHH Q ss_conf 76605883165777778799861022699962303 Q gi|254781054|r 89 DSRLRLIKGYGGALLREKIIAHAASRFIVIGDESK 123 (231) Q Consensus 89 d~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK 123 (231) | -|.|.........++.=+.+.|.|. T Consensus 80 -p--------ag~h~~~~~~~~aa~~G~~VID~s~ 105 (157) T d1nvmb1 80 -S--------ASAHVQNEALLRQAKPGIRLIDLTP 105 (157) T ss_dssp -C--------HHHHHHHHHHHHHHCTTCEEEECST T ss_pred -C--------CHHHHHHHHHHHHHHCCCEEEECCC T ss_conf -8--------4358881888999875988998146 No 35 >d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} Probab=50.24 E-value=4.8 Score=18.23 Aligned_cols=46 Identities=11% Similarity=0.019 Sum_probs=22.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHH---HHHHHHHHCCCCCCC Q ss_conf 789988791789999999999873287048961889---999998731578655 Q gi|254781054|r 21 GMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSR---NTENFCKIHHIPLHS 71 (231) Q Consensus 21 gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~---~t~~~a~~~gi~~~~ 71 (231) |-+|++-.-=+.. +++.+.+.+.=.++++++ .-+.+.++-++.++. T Consensus 117 GGIIa~N~~vd~~-----~A~~i~~~F~EvIIAP~f~~eAleiL~~KKNlRll~ 165 (393) T d1g8ma2 117 GDFIALSDICDVP-----TAKIISREVSDGVVAPGYEEEALKILSKKKNGGYCV 165 (393) T ss_dssp TEEEEESSCBCHH-----HHHHHHTSCEEEEEESCBCHHHHHHHHHGGGGTCEE T ss_pred CEEEEECCCCCCC-----HHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCCCHHH T ss_conf 5078861553321-----024322202010011345567788874254521343 No 36 >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Probab=49.13 E-value=7.9 Score=16.89 Aligned_cols=58 Identities=21% Similarity=0.113 Sum_probs=38.2 Q ss_pred HHHHHHHH--HCCCCCE-EEECCCHHHHHHHHHHHHHHHCCC-EEEEEECHHHHHHHHHHCCCCC Q ss_conf 99999998--3899789-988791789999999999873287-0489618899999987315786 Q gi|254781054|r 9 NAARRAIQ--YVVDGMT-LGMGTGSTAKEFMILLADKIANGF-RVQVIPSSRNTENFCKIHHIPL 69 (231) Q Consensus 9 ~~a~~A~~--~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~-~i~~v~tS~~t~~~a~~~gi~~ 69 (231) .+|.+|++ .+++|.. +=+|.|..--+.++.+.. .|. ++.++.++......|+++|... T Consensus 13 a~a~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~---~G~~~Vi~~d~~~~rl~~a~~~Ga~~ 74 (171) T d1pl8a2 13 SVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKA---MGAAQVVVTDLSATRLSKAKEIGADL 74 (171) T ss_dssp HHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHTTCSE T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHCCCC T ss_conf 999999998698999989998888418999999987---39825874069989999999959750 No 37 >d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]} Probab=47.51 E-value=8.4 Score=16.74 Aligned_cols=139 Identities=8% Similarity=-0.130 Sum_probs=68.7 Q ss_pred HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH----------CCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEE Q ss_conf 999983899789988791789999999999873----------2870489618899999987315786551008800798 Q gi|254781054|r 12 RRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA----------NGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLS 81 (231) Q Consensus 12 ~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~----------~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~ 81 (231) ..++..+++-..+=+-|...|..|.+.|.+.-. .-.++.+.+-...|+..++++|+...-...... T Consensus 47 ~~~l~~~~~~d~iifTS~~aV~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~~~~~~~~s---- 122 (260) T d1jr2a_ 47 SEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCGNA---- 122 (260) T ss_dssp HHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCSCCSCSSH---- T ss_pred HHHHHCHHHCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCCCH---- T ss_conf 9987283116689991734899999987762764122244443211584999857999999985997520565307---- Q ss_pred ECCHHCC-----C-CCCEEEECCCH-HHHHHHHHHHHHCCEEEEEEHHHCCCCCCC-------CCCCEEEEECCHHHHHH Q ss_conf 6330004-----7-66058831657-777787998610226999623035134557-------88726787257589999 Q gi|254781054|r 82 IDGFDEI-----D-SRLRLIKGYGG-ALLREKIIAHAASRFIVIGDESKRVDFLGR-------GMLPIEIDQFGVNKTLS 147 (231) Q Consensus 82 iDGaDev-----d-~~l~lIKGgGg-Al~rEKiva~~a~~~I~i~D~sK~v~~Lg~-------~plPVEV~p~~~~~v~~ 147 (231) -+-++.+ . ...-.+.|.++ -.+.+.+......-.-+++=++...+.+.. -.-++.++.|......+ T Consensus 123 ~~l~~~~~~~~~~~~~il~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~i~f~S~s~v~ 202 (260) T d1jr2a_ 123 EKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLT 202 (260) T ss_dssp HHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHH T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHH T ss_conf 88899876402567549996255530678888885498506998644544645368899998752476178626989999 Q ss_pred HHHHHHH Q ss_conf 9986322 Q gi|254781054|r 148 ALKEVAS 154 (231) Q Consensus 148 ~l~~~~~ 154 (231) .+-+.+. T Consensus 203 ~~~~~~~ 209 (260) T d1jr2a_ 203 YSLKHIQ 209 (260) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999998 No 38 >d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]} Probab=45.27 E-value=9.1 Score=16.52 Aligned_cols=62 Identities=19% Similarity=0.119 Sum_probs=42.3 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE Q ss_conf 758999999863221489850377225886362578888998207986898999999627996866 Q gi|254781054|r 141 GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIE 206 (231) Q Consensus 141 ~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe 206 (231) ........+++++..+|.--.-|++- |+...|=++|.=.-..+-.....|..+|.++|||=- T Consensus 13 ~r~~~a~kVn~iL~~yg~~I~gRmGi----p~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~v 74 (80) T d2nzca1 13 DREKAYRQVNELLHNFSEDILLRVGY----PVREENMAIIFLVLKTDNDTIGALSGKLGQISGVRV 74 (80) T ss_dssp SCHHHHHHHHHHHHHTGGGEEEEEEE----EEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEEE T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCC----CCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCEEE T ss_conf 82776899999998778878985468----705469259999998888799998876369998899 No 39 >d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=44.27 E-value=6.5 Score=17.42 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=32.0 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCC------EEEEEECCC----------CCEECCCCCEEEEECCCCCC Q ss_conf 87267872575899999986322148985------037722588----------63625788889982079868 Q gi|254781054|r 132 MLPIEIDQFGVNKTLSALKEVASCFGLNE------ELRLRRNGS----------GLFVSDGGNYIVDAFFGFIP 189 (231) Q Consensus 132 plPVEV~p~~~~~v~~~l~~~~~~~G~~~------~lR~~~~~~----------gp~iTDnGN~IlD~~~~~i~ 189 (231) .=|.|| ...+++++++ +|+.| .+|.|.... .-|-+|.+||++|......+ T Consensus 9 s~P~dI----M~eVyrALk~----L~~eWk~~~~y~ir~R~~~~~~~~~~Km~lQLYqv~~~~YLLDfk~i~~~ 74 (153) T d2v8qa1 9 SRPNDI----MAEVCRAIKQ----LDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDDE 74 (153) T ss_dssp SCHHHH----HHHHHHHHHH----TTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSSSCEEEEEEEECCC T ss_pred CCHHHH----HHHHHHHHHH----CCCEEEECCCEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEEEECCCC T ss_conf 997999----9999999998----69818756863899987789898535899988997489568886525862 No 40 >d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]} Probab=44.19 E-value=9.4 Score=16.42 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=33.2 Q ss_pred CHHHHHHHHHHHHHHHCCC-----C--CEEEECCCHHHHHHHHHHHHHHHC Q ss_conf 8789999999999983899-----7--899887917899999999998732 Q gi|254781054|r 2 DALQMKRNAARRAIQYVVD-----G--MTLGMGTGSTAKEFMILLADKIAN 45 (231) Q Consensus 2 ~~~~~K~~~a~~A~~~v~~-----g--mviGlGtGSTv~~~i~~L~~~~~~ 45 (231) |.+++=+.+|+.-++.|.. + -+|+|-+|||...+.+.|++..+. T Consensus 8 ~~~e~~~~aA~~i~~~I~~~~~~~~~~f~ialsGGsTP~~~y~~L~~~~~~ 58 (266) T d1fsfa_ 8 TAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKA 58 (266) T ss_dssp SHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 999999999999999999733046997799978982499999999977751 No 41 >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=43.83 E-value=9.6 Score=16.38 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=36.3 Q ss_pred HHHHHHHHH---HCCCCCEEEE-CC-CHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC Q ss_conf 999999998---3899789988-79-17899999999998732870489618899999987315786 Q gi|254781054|r 8 RNAARRAIQ---YVVDGMTLGM-GT-GSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPL 69 (231) Q Consensus 8 ~~~a~~A~~---~v~~gmviGl-Gt-GSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~ 69 (231) -..|..|+. .+++|..|=+ |. |.+-.++++ |++. .|..+.++..+......+++.|-.. T Consensus 10 ~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iq-la~~--~g~~vi~~~~~~~~~~~l~~~Ga~~ 73 (183) T d1pqwa_ 10 YLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVS-IAKM--IGARIYTTAGSDAKREMLSRLGVEY 73 (183) T ss_dssp HHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHH-HHHH--HTCEEEEEESSHHHHHHHHTTCCSE T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCH-HHCC--CCCCCEEEECCCCCCCCCCCCCCCC T ss_conf 99999999997599998999998898886422301-2011--2232201101442100012223321 No 42 >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=41.67 E-value=10 Score=16.17 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=26.6 Q ss_pred HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH Q ss_conf 3899789---988791789999999999873287048961889999998 Q gi|254781054|r 17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC 62 (231) Q Consensus 17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a 62 (231) .+++||. +|-|||+|+.++-+..+ ..-.+.+|-.|......+ T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG----~~G~V~aVD~s~~~l~~a 114 (227) T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVG----WEGKIFGIEFSPRVLREL 114 (227) T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHC----TTSEEEEEESCHHHHHHH T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHC----CCCEEEEEECCHHHHHHH T ss_conf 669998899915577899999999849----997899994759999999 No 43 >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Probab=39.79 E-value=11 Score=15.99 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=35.7 Q ss_pred HHHHHHHHH---HCCCCCEEE-EC-CCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC Q ss_conf 999999998---389978998-87-91789999999999873287048961889999998731578 Q gi|254781054|r 8 RNAARRAIQ---YVVDGMTLG-MG-TGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231) Q Consensus 8 ~~~a~~A~~---~v~~gmviG-lG-tGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231) -..|..|+. .+++|..|= .| +|..-...++ +++. .|.++.+..+|......++++|.. T Consensus 13 ~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq-~a~~--~G~~vi~~~~~~~~~~~~~~~Ga~ 75 (174) T d1yb5a2 13 YFTAYRALIHSACVKAGESVLVHGASGGVGLAACQ-IARA--YGLKILGTAGTEEGQKIVLQNGAH 75 (174) T ss_dssp HHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHH-HHHH--TTCEEEEEESSHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999999997589999989998446554212321-1003--686100243221112220126863 No 44 >d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]} Probab=38.95 E-value=11 Score=15.91 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=3.9 Q ss_pred HHHHHHHHHCCC Q ss_conf 899999962799 Q gi|254781054|r 191 PQIISGELCNIP 202 (231) Q Consensus 191 p~~le~~L~~Ip 202 (231) |+.++.-.+..| T Consensus 179 ~~Gi~~l~~~~P 190 (224) T d1bd3a_ 179 PQGIERVFKEYP 190 (224) T ss_dssp HHHHHHHHHHCT T ss_pred HHHHHHHHHHCC T ss_conf 799999998796 No 45 >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Probab=38.78 E-value=11 Score=15.90 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=30.4 Q ss_pred HHHHHHHCCCCCEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHH----HHHCCCCC Q ss_conf 9999983899789988--79178999999999987328704896188999999----87315786 Q gi|254781054|r 11 ARRAIQYVVDGMTLGM--GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENF----CKIHHIPL 69 (231) Q Consensus 11 a~~A~~~v~~gmviGl--GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~----a~~~gi~~ 69 (231) ...+++.+++|.++=+ |+|..+.+|. + .+.+++++-.|...-.. +.+.|++- T Consensus 22 ~~~~~~~~~~grvLDiGcG~G~~~~~la----~---~g~~v~gvD~s~~~l~~a~~~~~~~~~~~ 79 (198) T d2i6ga1 22 VLAAAKVVAPGRTLDLGCGNGRNSLYLA----A---NGYDVTAWDKNPASMANLERIKAAEGLDN 79 (198) T ss_dssp HHHHHTTSCSCEEEEETCTTSHHHHHHH----H---TTCEEEEEESCHHHHHHHHHHHHHTTCTT T ss_pred HHHHCCCCCCCCEEEECCCCCHHHHHHH----H---HHHHHCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 9997154799959998899978899989----8---76654035676788999999754223332 No 46 >d2qlva1 d.129.6.2 (A:460-630) Carbon catabolite-derepressing protein kinase SNF1 {Saccharomyces cerevisiae [TaxId: 4932]} Probab=38.31 E-value=5.3 Score=17.96 Aligned_cols=56 Identities=29% Similarity=0.449 Sum_probs=35.6 Q ss_pred CCC-C-CCCCEEEEECCHHHHHHHHHHHHHHCCCCC---------EEEEEECC-------------------CCCEECCC Q ss_conf 455-7-887267872575899999986322148985---------03772258-------------------86362578 Q gi|254781054|r 127 FLG-R-GMLPIEIDQFGVNKTLSALKEVASCFGLNE---------ELRLRRNG-------------------SGLFVSDG 176 (231) Q Consensus 127 ~Lg-~-~plPVEV~p~~~~~v~~~l~~~~~~~G~~~---------~lR~~~~~-------------------~gp~iTDn 176 (231) +|| + -.-|.|| ...+.++|+++ |+.| .+|.|... -.-|-+|. T Consensus 47 hfGIRSrs~P~ei----M~evykALk~L----g~eWk~~~~~~~~~ir~Rwk~~~~~~~~~~~~~~~~vk~~iQLYqv~~ 118 (171) T d2qlva1 47 HFGIRSRSYPLDV----MGEIYIALKNL----GAEWAKPSEEDLWTIKLRWKYDIGNKTNTNEKIPDLMKMVIQLFQIET 118 (171) T ss_dssp EESEEECSCHHHH----HHHHHHHHHHH----TCEECCCC---CCEEEEEEC--------------CEEEEEEEEEC--- T ss_pred EEECCCCCCHHHH----HHHHHHHHHHC----CCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC T ss_conf 6503168998999----99999999986----998932687776489997406877654567788844899999998737 Q ss_pred CCEEEEECCCCCCC Q ss_conf 88899820798689 Q gi|254781054|r 177 GNYIVDAFFGFIPD 190 (231) Q Consensus 177 GN~IlD~~~~~i~d 190 (231) +||++|..+...+. T Consensus 119 ~~YLlDFK~~g~e~ 132 (171) T d2qlva1 119 NNYLVDFKFDGWES 132 (171) T ss_dssp CCEEEEEEEEEEEC T ss_pred CCEEEEEECCCCCC T ss_conf 86699885278654 No 47 >d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]} Probab=36.88 E-value=11 Score=16.10 Aligned_cols=129 Identities=12% Similarity=0.001 Sum_probs=65.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCC----CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCC--C Q ss_conf 9978998879178999999999987328----704896188999999873157865510088007986330004766--0 Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANG----FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSR--L 92 (231) Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~----~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~--l 92 (231) ++-.-+=+=|+..|.+|.+.|.+.-.+- .+.++.+-...|+..++++|++..-..+... =.-++++.+. . T Consensus 51 ~~~d~vvfTS~ngV~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~~~~~s----~~l~~~~~~~~~~ 126 (254) T d1wd7a_ 51 QGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTS----KSLLPLLPQGRGV 126 (254) T ss_dssp TCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHTSEEEESSHHHHHHHHHTTCCCSEECSSSG----GGGGGGCCCCCEE T ss_pred CCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCHHH----HHHHHHHHCCCCE T ss_conf 599999998989999999999874952767841885999978999999973999853772007----9999987347978 Q ss_pred EEEECC--CHHHHHHHHHHHHHCCEEEEEEHHH--------CCCCCCCCCCCEEEEECCHHHHHHHHHHHH Q ss_conf 588316--5777778799861022699962303--------513455788726787257589999998632 Q gi|254781054|r 93 RLIKGY--GGALLREKIIAHAASRFIVIGDESK--------RVDFLGRGMLPIEIDQFGVNKTLSALKEVA 153 (231) Q Consensus 93 ~lIKGg--GgAl~rEKiva~~a~~~I~i~D~sK--------~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~ 153 (231) -++.++ +...+.|.+-...+.-.-+.+=++. +.+.+.. =++.++.|....+.+.+-+++ T Consensus 127 ~l~~~~~~~~~~L~~~L~~~G~~v~~v~~Y~t~~~~~~~~~l~~~l~~--~~~d~V~ftS~s~v~~f~~~~ 195 (254) T d1wd7a_ 127 AALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLR--GEVDALAFVAAIQVEFLFEGA 195 (254) T ss_dssp EEEECSSSCCHHHHHHHHHTTEEEEEECSEECCBCHHHHHHHHHHHHT--TCCSEEEESSHHHHHHHHHHC T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHH T ss_conf 999515678379999997366764699986640333673889999842--895299847889999999987 No 48 >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Probab=35.33 E-value=11 Score=16.01 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=27.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC Q ss_conf 99789988791789999999999873287048961889999998731 Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH 65 (231) Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~ 65 (231) ++-.+||.|.|++++.+.+.- ...++++|--....-..|+++ T Consensus 80 k~vLiiGgG~G~~~~~~l~~~-----~~~~v~~vEiD~~Vv~~a~~~ 121 (285) T d2o07a1 80 RKVLIIGGGDGGVLREVVKHP-----SVESVVQCEIDEDVIQVSKKF 121 (285) T ss_dssp CEEEEEECTTSHHHHHHTTCT-----TCCEEEEEESCHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHCC-----CCCEEEECCCCHHHHHHHHHH T ss_conf 768986799649999999759-----953136506778999999763 No 49 >d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]} Probab=34.40 E-value=13 Score=15.46 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=8.5 Q ss_pred HHHHHHHHCCCCCCCC Q ss_conf 9999987315786551 Q gi|254781054|r 57 NTENFCKIHHIPLHSP 72 (231) Q Consensus 57 ~t~~~a~~~gi~~~~l 72 (231) .|..+++++|+|--.+ T Consensus 68 ~T~~wL~~~gI~Yd~L 83 (124) T d1xpja_ 68 IITEWLDKHQVPYDEI 83 (124) T ss_dssp HHHHHHHHTTCCCSEE T ss_pred HHHHHHHHCCCCCEEE T ss_conf 9999999829982388 No 50 >d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]} Probab=34.11 E-value=14 Score=15.43 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=31.4 Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH Q ss_conf 3899789988791789999999999873287048961889999998 Q gi|254781054|r 17 YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC 62 (231) Q Consensus 17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a 62 (231) .=++..+|++|+|++.... ...|.--..|.....|||+.-...-+ T Consensus 82 ~~r~~~iiaiGGG~v~D~a-gf~A~~y~rgi~~i~vPTtlla~vDs 126 (347) T d1ujna_ 82 LPRNATLLVVGGGTLTDLG-GFVAATYLRGVAYLAFPTTTLAIVDA 126 (347) T ss_dssp CCTTCEEEEEESHHHHHHH-HHHHHHBTTCCEEEEEECSHHHHHTT T ss_pred CCCCCCEEEEECHHHHHHH-HHHHHHHCCCCCEEECCCHHHHCCCC T ss_conf 0356533686033233578-88765431785034036514303444 No 51 >d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]} Probab=33.75 E-value=14 Score=15.40 Aligned_cols=44 Identities=27% Similarity=0.200 Sum_probs=31.8 Q ss_pred CHHHHHHHHHHHHHHHC-----C-CC-CEEEECCCHHHHHHHHHHHHHHHC Q ss_conf 87899999999999838-----9-97-899887917899999999998732 Q gi|254781054|r 2 DALQMKRNAARRAIQYV-----V-DG-MTLGMGTGSTAKEFMILLADKIAN 45 (231) Q Consensus 2 ~~~~~K~~~a~~A~~~v-----~-~g-mviGlGtGSTv~~~i~~L~~~~~~ 45 (231) |.+++=+.+|+.-++.| . ++ -+|+|-+|||-..+.+.|++...+ T Consensus 8 d~~e~s~~aA~~i~~~I~~~~~~~~~~~~i~lsGGsTP~~~y~~L~~~~~~ 58 (281) T d1ne7a_ 8 HYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKN 58 (281) T ss_dssp SHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 999999999999999999733056897799979986799999999998752 No 52 >d2qrda1 d.129.6.2 (A:450-576) Snf1-like protein kinase ssp2 {Schizosaccharomyces pombe [TaxId: 4896]} Probab=33.13 E-value=6.5 Score=17.41 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=30.5 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCC---------------EEEEEECC---------------CCCEECCCCCEEE Q ss_conf 87267872575899999986322148985---------------03772258---------------8636257888899 Q gi|254781054|r 132 MLPIEIDQFGVNKTLSALKEVASCFGLNE---------------ELRLRRNG---------------SGLFVSDGGNYIV 181 (231) Q Consensus 132 plPVEV~p~~~~~v~~~l~~~~~~~G~~~---------------~lR~~~~~---------------~gp~iTDnGN~Il 181 (231) .=|.|| ...+.+++++. |+.+ .+|.|-.. -.-|-+|.+||++ T Consensus 11 s~P~ei----M~eVYrALk~L----g~eWk~~~~~~~~~~~d~y~Ir~R~~~~~~~~~~~~~~vkm~iQLYqve~~~YLl 82 (127) T d2qrda1 11 GDAPEI----LLAVYRALQRA----GAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFML 82 (127) T ss_dssp SCHHHH----HHHHHHHHHHH----TCEECCCCCBTTBCCGGGGEEEEEEECHHHHHTTCCEEEEEEEEEEEEETTEEEE T ss_pred CCHHHH----HHHHHHHHHHC----CCEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCEEE T ss_conf 996999----99999999985----9979665731024667765899986068865568872499999989974896799 Q ss_pred EECCCCC Q ss_conf 8207986 Q gi|254781054|r 182 DAFFGFI 188 (231) Q Consensus 182 D~~~~~i 188 (231) |..+... T Consensus 83 DFK~dg~ 89 (127) T d2qrda1 83 DVKSNGY 89 (127) T ss_dssp EEEEEEE T ss_pred EECCCCC T ss_conf 9724774 No 53 >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Probab=32.45 E-value=14 Score=15.27 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=36.2 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCC-CCCCCEEEEEECCHHC Q ss_conf 899789988791789999999999873287048961889999998731578655-1008800798633000 Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHS-PEDVSSVDLSIDGFDE 87 (231) Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~-l~~~~~iDi~iDGaDe 87 (231) .++-.+||.|.|++++.+.+.. ....+++|--...--..|+++- |... ..+.+++.+.++-|-+ T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~-----~~~~i~~VEIDp~Vi~~a~~~~-~~~~~~~~d~rv~v~~~Da~~ 154 (295) T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHD-----SVEKAILCEVDGLVIEAARKYL-KQTSCGFDDPRAEIVIANGAE 154 (295) T ss_dssp CCEEEEEECTTCHHHHHHTTST-----TCSEEEEEESCHHHHHHHHHHC-HHHHGGGGCTTEEEEESCHHH T ss_pred CCEEEEECCCCHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHHH-HHHCCCCCCCCCEEEHHHHHH T ss_conf 7658995698469999998549-----9744998458889999999888-752122257773798354899 No 54 >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=30.72 E-value=15 Score=15.09 Aligned_cols=68 Identities=16% Similarity=-0.049 Sum_probs=41.3 Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEC Q ss_conf 7872575899999986322148985-03772258863625788889982079868989999996279968664 Q gi|254781054|r 136 EIDQFGVNKTLSALKEVASCFGLNE-ELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEH 207 (231) Q Consensus 136 EV~p~~~~~v~~~l~~~~~~~G~~~-~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~ 207 (231) +|.-.-.+-+++.+-..+...+.+- .+..+....| +-++.+.+++..... +...+-.+|.++|||.+. T Consensus 5 ~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g---~~~~~~~i~v~~~~~-~l~~ll~kL~~l~~V~~V 73 (77) T d1y7pa2 5 RIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHG---EHEGKALIYFEIEGG-DFEKILERVKTFDYIIEI 73 (77) T ss_dssp EEEEECCTTHHHHHHHHCC----CEEEEEEEECCSS---TTTTEEEEEEEECSS-CHHHHHHHHHTCTTEEEE T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---EEEEEEEEEEECCCC-CHHHHHHHHHCCCCEEEE T ss_conf 999955777699999999876999688885316788---179999999975864-499999998769992688 No 55 >d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]} Probab=30.55 E-value=16 Score=15.07 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.3 Q ss_pred CCCHHHHHHHHHCCCC Q ss_conf 6898999999627996 Q gi|254781054|r 188 IPDPQIISGELCNIPG 203 (231) Q Consensus 188 i~dp~~le~~L~~IpG 203 (231) +..|+.++.-.+..|. T Consensus 160 iaa~~Gi~~i~~~~P~ 175 (208) T d1i5ea_ 160 IAAPEGVKAVETAHPD 175 (208) T ss_dssp EECHHHHHHHHHHCTT T ss_pred EECHHHHHHHHHHCCC T ss_conf 6157999999987959 No 56 >d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase {Bacillus subtilis [TaxId: 1423]} Probab=30.26 E-value=12 Score=15.85 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=35.2 Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCH-------HHHHHHHHHHHHHHC-CCE-EEEEECH--HHHHHHHHHCCCCCCCC Q ss_conf 99999999999838997899887917-------899999999998732-870-4896188--99999987315786551 Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMGTGS-------TAKEFMILLADKIAN-GFR-VQVIPSS--RNTENFCKIHHIPLHSP 72 (231) Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlGtGS-------Tv~~~i~~L~~~~~~-~~~-i~~v~tS--~~t~~~a~~~gi~~~~l 72 (231) .+|...-..+ .+.++-++=.|+=. -.....+.|+++.+. +.+ +.+++++ .-....|..+|+|.... T Consensus 3 ~l~~~i~~~~--~~~~~~~l~~~~~l~~~~dP~ll~~i~~~la~~~~~~~~d~Ivg~~~~Gi~lA~~iA~~L~~p~v~~ 79 (191) T d1y0ba1 3 ALKRKIEEEG--VVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFA 79 (191) T ss_dssp HHHHHHHHHC--EEETTTEEECTTTTSSEECHHHHHHHHHHHHHHTTTTTCCEEEEETTTTHHHHHHHHHHHTCCEEEE T ss_pred HHHHHHHCCC--EECCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEE T ss_conf 8999986179--6679994764576576569999999999999985067997999547505788999986325038999 No 57 >d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} Probab=29.92 E-value=11 Score=16.08 Aligned_cols=80 Identities=25% Similarity=0.236 Sum_probs=40.7 Q ss_pred CEEEECC--CHHHHHHHHHHHHHHH-CCCEEEEEE--CHHHHHHHHHHCC----------CCCCCC-CCCCEEEEEECCH Q ss_conf 8998879--1789999999999873-287048961--8899999987315----------786551-0088007986330 Q gi|254781054|r 22 MTLGMGT--GSTAKEFMILLADKIA-NGFRVQVIP--SSRNTENFCKIHH----------IPLHSP-EDVSSVDLSIDGF 85 (231) Q Consensus 22 mviGlGt--GSTv~~~i~~L~~~~~-~~~~i~~v~--tS~~t~~~a~~~g----------i~~~~l-~~~~~iDi~iDGa 85 (231) |.||+|. |||+..-+.+....+. .-+.-..-| -..-|+.-..++| .|.-++ .-+.-=||.|+|- T Consensus 58 mLVG~GGnngTT~~aGv~Anr~gL~w~tk~G~~~an~~GSltq~stirlG~~~~~~~~~~~P~kd~lPl~~p~DiVfGGW 137 (397) T d1vkoa1 58 LLVGLGGNNGSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGW 137 (397) T ss_dssp EEETTTSHHHHHHHHHHHHHHTTCEEEETTEEEECCCTTCHHHHCEEEEEEETTTTEEEEEEGGGTSCCCCGGGEEEEEE T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECC T ss_conf 98438840888999999998758975466774058863514430335751357898733563765178898211689444 Q ss_pred HCCCCCCEEEECCCHHHHHHHH Q ss_conf 0047660588316577777879 Q gi|254781054|r 86 DEIDSRLRLIKGYGGALLREKI 107 (231) Q Consensus 86 Devd~~l~lIKGgGgAl~rEKi 107 (231) |-.+.++ .-|+.|-++ T Consensus 138 DI~~~nL------~eAa~rA~V 153 (397) T d1vkoa1 138 DISDSNL------YEAMGRAKV 153 (397) T ss_dssp CSSCCCT------THHHHHHTC T ss_pred CCCCCCH------HHHHHHCCC T ss_conf 6999988------999987599 No 58 >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Probab=29.59 E-value=16 Score=14.97 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=70.2 Q ss_pred CEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCC--------CCCCCCCEEEEEECCHHCCCCCCE Q ss_conf 899887917899999999998732870489618899999987315786--------551008800798633000476605 Q gi|254781054|r 22 MTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPL--------HSPEDVSSVDLSIDGFDEIDSRLR 93 (231) Q Consensus 22 mviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~--------~~l~~~~~iDi~iDGaDevd~~l~ 93 (231) ++.|+ +||--.+++-.|.+.... ..+.++++......++..+..=+ .+.+.....+...+..+-.-...- T Consensus 32 ~L~Gl-sgS~ka~~~A~l~~~~~r-p~LvVt~~~~~A~~l~~dL~~~l~~~~v~~fp~~~~~~~~~~~~~~~~~~~~~~~ 109 (408) T d1c4oa1 32 TLLGA-TGTGKTVTMAKVIEALGR-PALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDA 109 (408) T ss_dssp EEEEC-TTSCHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCC T ss_pred EEECC-CCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCCCCHHHHHHHHHH T ss_conf 98568-887899999999998599-9999918999999999999986476645567753422575456845554444421 Q ss_pred EEECCCHHHHHHHHH-HHHHCCEEEEEEHHHCCCCCC------CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 883165777778799-861022699962303513455------7887267872575899999986322148985037722 Q gi|254781054|r 94 LIKGYGGALLREKII-AHAASRFIVIGDESKRVDFLG------RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRR 166 (231) Q Consensus 94 lIKGgGgAl~rEKiv-a~~a~~~I~i~D~sK~v~~Lg------~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~ 166 (231) ...-.- ...+.... ....+..|+++-...+...+. ...+-+++ +...-...+.+.+..+||...-.... T Consensus 110 ~~~~~~-~~~~~~~~~~~~~~~~viVv~~~a~l~~l~~~~~~~~~~~~l~~---G~~~~~~~l~~~L~~~gY~r~~~V~~ 185 (408) T d1c4oa1 110 SINPEI-ERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVER---GKPYPREVLLERLLELGYQRNDIDLS 185 (408) T ss_dssp SCCHHH-HHHHHHHHHHHHHCSCEEEEEEGGGCSCCCCHHHHHHCCBC-------------------------------- T ss_pred HHHHHH-HHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHHHHCEEEEEC---CCEEEHHHHHHHHHHHHCEECCEEEC T ss_conf 034677-76444655532046765999511232167881887611488517---98950899999999752221430533 Q ss_pred CCCCCEECCCCCEEEEECCCCCCCHHHHHH Q ss_conf 588636257888899820798689899999 Q gi|254781054|r 167 NGSGLFVSDGGNYIVDAFFGFIPDPQIISG 196 (231) Q Consensus 167 ~~~gp~iTDnGN~IlD~~~~~i~dp~~le~ 196 (231) -|-|-...| |+|++...-..|..+|- T Consensus 186 --~GefsvRG~--IlDIfp~~~~~P~RIef 211 (408) T d1c4oa1 186 --PGRFRAKGE--VLEIFPAYETEPIRVEL 211 (408) T ss_dssp ------------------------------ T ss_pred --CCEEEEECC--CEEECCCCCCCCEEEEE T ss_conf --660573067--12760024576378999 No 59 >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Probab=29.25 E-value=16 Score=14.93 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=26.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC Q ss_conf 99789988791789999999999873287048961889999998731 Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH 65 (231) Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~ 65 (231) ++-.+||.|+|++++.+++.- ....+++|-=...--..|+++ T Consensus 77 ~~vLiiGgG~G~~~~~~l~~~-----~~~~i~~VEID~~Vi~~a~~~ 118 (274) T d1iy9a_ 77 EHVLVVGGGDGGVIREILKHP-----SVKKATLVDIDGKVIEYSKKF 118 (274) T ss_dssp CEEEEESCTTCHHHHHHTTCT-----TCSEEEEEESCHHHHHHHHHH T ss_pred CEEEECCCCCCHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHH T ss_conf 337752788719999998469-----941588854888999999875 No 60 >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=27.40 E-value=18 Score=14.74 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=34.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCC-CCCCCCEEEEEE Q ss_conf 9978998879178999999999987328704896188999999873157865-510088007986 Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH-SPEDVSSVDLSI 82 (231) Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~-~l~~~~~iDi~i 82 (231) ++-.+||.|.|++++.+.+.- ....+++|--....-..|+++- |.. ...+.+++.+.+ T Consensus 82 k~VLiiGgG~G~~~r~~l~~~-----~~~~i~~VEiD~~Vi~~~~~~f-~~~~~~~~~~r~~i~~ 140 (290) T d1xj5a_ 82 KKVLVIGGGDGGVLREVARHA-----SIEQIDMCEIDKMVVDVSKQFF-PDVAIGYEDPRVNLVI 140 (290) T ss_dssp CEEEEETCSSSHHHHHHTTCT-----TCCEEEEEESCHHHHHHHHHHC-HHHHGGGGSTTEEEEE T ss_pred CCEEEECCCCHHHHHHHHHCC-----CCEEEEEECCCHHHHHHHHHHC-HHHHCCCCCCCCEEEE T ss_conf 534774698369999998566-----6304687258899999999855-3321134699747998 No 61 >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=27.12 E-value=18 Score=14.70 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=24.6 Q ss_pred HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH Q ss_conf 3899789---9887917899999999998732870489618899999 Q gi|254781054|r 17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60 (231) Q Consensus 17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~ 60 (231) .+++|+. +|-|||+|+.++.+. ..++ .+.+|--|...-. T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~----v~~g-~V~gvDis~~~i~ 94 (209) T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADI----VDEG-IIYAVEYSAKPFE 94 (209) T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHH----TTTS-EEEEECCCHHHHH T ss_pred CCCCCCEEEEECCCCCHHHHHHHHH----CCCC-EEEEEECCHHHHH T ss_conf 9999999999278579999999974----1677-6999908799999 No 62 >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=26.43 E-value=18 Score=14.62 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=27.4 Q ss_pred HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH Q ss_conf 3899789---98879178999999999987328704896188999999873 Q gi|254781054|r 17 YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI 64 (231) Q Consensus 17 ~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~ 64 (231) .+++|+. +|-|||+|+.++.+. . ....+.+|-.|...-..+.+ T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~----~-~~g~V~aVDiS~~~i~~a~~ 116 (230) T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADI----A-DKGIVYAIEYAPRIMRELLD 116 (230) T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHH----T-TTSEEEEEESCHHHHHHHHH T ss_pred CCCCCCEEEEECEECCHHHHHHHHH----C-CCCEEEEEECCHHHHHHHHH T ss_conf 8899998999088748899999974----8-99889999492899999999 No 63 >d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]} Probab=25.78 E-value=19 Score=14.55 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=10.0 Q ss_pred CCCHHHHHHHHHCCCCE Q ss_conf 68989999996279968 Q gi|254781054|r 188 IPDPQIISGELCNIPGV 204 (231) Q Consensus 188 i~dp~~le~~L~~IpGV 204 (231) +..|+.++.-.+..|+| T Consensus 169 ias~~Gi~~l~~~~P~v 185 (215) T d1xtta1 169 ISSEYGVNKILSKYPFI 185 (215) T ss_dssp EEEHHHHHHHHHHCTTS T ss_pred EECHHHHHHHHHHCCCC T ss_conf 85489999999879498 No 64 >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Probab=25.62 E-value=19 Score=14.53 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=15.7 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCC Q ss_conf 899789988791789999999999873287 Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGF 47 (231) Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~ 47 (231) +.+||--|=|+=.|+...++.|.+..+.+. T Consensus 93 i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~ 122 (254) T d2nxca1 93 IEPGMAFGTGHHETTRLALKALARHLRPGD 122 (254) T ss_dssp CCCC-----CCSHHHHHHHHHHHHHCCTTC T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 746545675434225677777775167667 No 65 >d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Probab=24.45 E-value=20 Score=14.39 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=28.2 Q ss_pred HHHHHHHHHH----------HCCCCCEEEECCCHHHHHHHHHHHHH Q ss_conf 9999999998----------38997899887917899999999998 Q gi|254781054|r 7 KRNAARRAIQ----------YVVDGMTLGMGTGSTAKEFMILLADK 42 (231) Q Consensus 7 K~~~a~~A~~----------~v~~gmviGlGtGSTv~~~i~~L~~~ 42 (231) -+..|++.++ +|++|.++=+|-|+..+....+|.++ T Consensus 10 ~~~Ia~~v~~f~~~ei~~grLv~dG~tLQ~GIG~ip~AV~~~L~~~ 55 (274) T d2g39a2 10 TQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIES 55 (274) T ss_dssp HHHHHHHHHHHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSS T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHC T ss_conf 9999999999998776516768899831365688999999998538 No 66 >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Probab=24.37 E-value=20 Score=14.38 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=31.7 Q ss_pred CCCCCEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCC Q ss_conf 899789988--7917899999999998732870489618899999987315 Q gi|254781054|r 18 VVDGMTLGM--GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHH 66 (231) Q Consensus 18 v~~gmviGl--GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~g 66 (231) .++++.+=+ |+|..-.+.|+.+ + +.|.++.++++|.+...+++++| T Consensus 29 ~~~~~~vlI~gasGgVG~~aiQla-k--~~G~~Vi~~t~s~~k~~~~~~lG 76 (77) T d1o8ca2 29 RPQDGEIVVTGASGGVGSTAVALL-H--KLGYQVVAVSGRESTHEYLKSLG 76 (77) T ss_dssp CGGGCEEEESSTTSHHHHHHHHHH-H--HTTCCEEEEESCGGGHHHHHHHT T ss_pred CCCCCCEEEEECCCCHHHHHHHHH-H--HCCCEEEEEECCHHHHHHHHHCC T ss_conf 158976898868996999999999-9--80995999989889999999778 No 67 >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Probab=24.30 E-value=20 Score=14.37 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=41.6 Q ss_pred EEECCCHHHHHHHHHHHHHHH-CC-CEEEEEECHH--H------HHHHHHHCCCCCCCCCCCC---E---EEEEECCHHC Q ss_conf 988791789999999999873-28-7048961889--9------9999873157865510088---0---0798633000 Q gi|254781054|r 24 LGMGTGSTAKEFMILLADKIA-NG-FRVQVIPSSR--N------TENFCKIHHIPLHSPEDVS---S---VDLSIDGFDE 87 (231) Q Consensus 24 iGlGtGSTv~~~i~~L~~~~~-~~-~~i~~v~tS~--~------t~~~a~~~gi~~~~l~~~~---~---iDi~iDGaDe 87 (231) +=.|-|+ ++.|++.++ .| .++.+|..+. + ....+++.|+.+.-++.+. . ++=..+=+-+ T Consensus 11 ~~fG~g~-----l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~ 85 (385) T d1rrma_ 11 AWFGRGA-----VGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQN 85 (385) T ss_dssp EEESTTG-----GGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHH T ss_pred CEECCCH-----HHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHC T ss_conf 2798689-----99999999976999799998965565808999999998759859998682699798999988654303 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHC Q ss_conf 47660588316577777879986102 Q gi|254781054|r 88 IDSRLRLIKGYGGALLREKIIAHAAS 113 (231) Q Consensus 88 vd~~l~lIKGgGgAl~rEKiva~~a~ 113 (231) .+.|.-.==|||-++=-=|.+|..+. T Consensus 86 ~~~D~IiaiGGGS~iD~aK~ia~~~~ 111 (385) T d1rrma_ 86 SGADYLIAIGGGSPQDTCKAIGIISN 111 (385) T ss_dssp HTCSEEEEEESHHHHHHHHHHHHHHH T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHC T ss_conf 58888986698842269999999963 No 68 >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Probab=23.89 E-value=20 Score=14.32 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=23.6 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHH Q ss_conf 89978998879178999999999987328704896188999 Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNT 58 (231) Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t 58 (231) -+...+||+|.||+.... +.++.+ .+..+..|||+..| T Consensus 84 ~~~D~IiavGGGs~iD~a-K~iA~~--~~~p~i~IPTT~gt 121 (366) T d1jq5a_ 84 AEAAIVIGVGGGKTLDTA-KAVADE--LDAYIVIVPTAAST 121 (366) T ss_dssp TTCSEEEEEESHHHHHHH-HHHHHH--HTCEEEEEESSCCS T ss_pred CCCCEEEEECCCCCCCCH-HEEEEC--CCCEEEEHHHHHHH T ss_conf 388689981688644220-001204--66535402434434 No 69 >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Probab=22.73 E-value=22 Score=14.18 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=39.4 Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHCCC-EEEEEECH-HHHHHHHHHCCCCCCCCCC Q ss_conf 3899789988791789999999999873287-04896188-9999998731578655100 Q gi|254781054|r 17 YVVDGMTLGMGTGSTAKEFMILLADKIANGF-RVQVIPSS-RNTENFCKIHHIPLHSPED 74 (231) Q Consensus 17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~-~i~~v~tS-~~t~~~a~~~gi~~~~l~~ 74 (231) -+++..++=+|+|.+....++.|..+ +. +++++.-+ .....++.++|....++++ T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~---g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~ 77 (159) T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDR---GVRAVLVANRTYERAVELARDLGGEAVRFDE 77 (159) T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHH---CCSEEEEECSSHHHHHHHHHHHTCEECCGGG T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHCCCCCCHH T ss_conf 70169699987988999999999966---9857999758688999988864114345145 No 70 >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Probab=22.14 E-value=22 Score=14.11 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=34.7 Q ss_pred CEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHH-HHHHHHCCCCCCC-CCCCCEEEEEE Q ss_conf 89988-79178999999999987328704896188999-9998731578655-10088007986 Q gi|254781054|r 22 MTLGM-GTGSTAKEFMILLADKIANGFRVQVIPSSRNT-ENFCKIHHIPLHS-PEDVSSVDLSI 82 (231) Q Consensus 22 mviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t-~~~a~~~gi~~~~-l~~~~~iDi~i 82 (231) |-||+ |.|.-...+++.|.+. .+.++.+...|... +.+++++|+...+ .+++.+-|+.| T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~--~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~ 62 (152) T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLI 62 (152) T ss_dssp CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEE T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEE T ss_conf 9899996749999999999978--9975899948816777765421122343111113555089 No 71 >d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Probab=20.60 E-value=24 Score=13.91 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=65.3 Q ss_pred HHHHH--HCCCCCEEEEC-----CCHHHHHHHHHHHHHHHCC-CEEEEEECHHHHH------------------------ Q ss_conf 99998--38997899887-----9178999999999987328-7048961889999------------------------ Q gi|254781054|r 12 RRAIQ--YVVDGMTLGMG-----TGSTAKEFMILLADKIANG-FRVQVIPSSRNTE------------------------ 59 (231) Q Consensus 12 ~~A~~--~v~~gmviGlG-----tGSTv~~~i~~L~~~~~~~-~~i~~v~tS~~t~------------------------ 59 (231) ++|++ -++|||+|..- .--.++..++.++++ | ++++..|||.... T Consensus 47 ~eai~~~GlkDGMTiSFHHh~R~GD~v~n~Vm~~ia~m---GiKdLtia~SSl~~~h~plve~I~~GvVt~I~tsg~rG~ 123 (236) T d1xr4a1 47 EEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEM---GFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGK 123 (236) T ss_dssp HHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHT---TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHH T ss_pred HHHHHHCCCCCCCEEEEEHHCCCCCHHHHHHHHHHHHC---CCCCCEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCH T ss_conf 99999808867978885310037137899999999974---967617702336401189999986583667886676736 Q ss_pred -HHHHHCCC---CCCC---------CCC-CCEEEEEECCHHCCCCCCEE--EECC--CHHHHHHHHHHHHHCCEEEEEEH Q ss_conf -99873157---8655---------100-88007986330004766058--8316--57777787998610226999623 Q gi|254781054|r 60 -NFCKIHHI---PLHS---------PED-VSSVDLSIDGFDEIDSRLRL--IKGY--GGALLREKIIAHAASRFIVIGDE 121 (231) Q Consensus 60 -~~a~~~gi---~~~~---------l~~-~~~iDi~iDGaDevd~~l~l--IKGg--GgAl~rEKiva~~a~~~I~i~D~ 121 (231) -.+...|+ |++- ++. --+||++|=||---|.-+|+ ..|. =|.|=.-++=|+.|++.|.+.|. T Consensus 124 lgeaiS~G~l~~PviirSHGGRaraIesGe~~IDVAFigaP~~D~~GN~nG~~G~saCGsLGYa~vDA~yA~~VV~vTD~ 203 (236) T d1xr4a1 124 LGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEE 203 (236) T ss_dssp HHHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHHCSEEEEEESC T ss_pred HHHHHHCCCCCCCEEEECCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEECC T ss_conf 89997367778886886578742331258730689997377642225867876875664564113638862918998446 Q ss_pred HHCCCC Q ss_conf 035134 Q gi|254781054|r 122 SKRVDF 127 (231) Q Consensus 122 sK~v~~ 127 (231) +|+. T Consensus 204 --lvpy 207 (236) T d1xr4a1 204 --WVEF 207 (236) T ss_dssp --EECS T ss_pred --CCCC T ss_conf --7679 No 72 >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Probab=20.35 E-value=24 Score=13.88 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=38.5 Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCC--CCCCCCEEEEEECCHHC Q ss_conf 89978998879178999999999987328704896188999999873157865--51008800798633000 Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH--SPEDVSSVDLSIDGFDE 87 (231) Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~--~l~~~~~iDi~iDGaDe 87 (231) .++-.+||.|+|+++..+.+.- ...++++|--....-..|+++ +|.. ...+.+++.+.++-|-+ T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~-----~~~~v~~VEiD~~Vi~~a~~~-f~~~~~~~~~d~rv~i~~~Da~~ 143 (312) T d1uira_ 78 PKRVLIVGGGEGATLREVLKHP-----TVEKAVMVDIDGELVEVAKRH-MPEWHQGAFDDPRAVLVIDDARA 143 (312) T ss_dssp CCEEEEEECTTSHHHHHHTTST-----TCCEEEEEESCHHHHHHHHHH-CHHHHTTGGGCTTEEEEESCHHH T ss_pred CCEEEEECCCCHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHC-CCCCCCCCCCCCCEEEEECHHHH T ss_conf 6658983799669999998559-----964599854887899999752-84013575678842999860999 Done!