RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A
[Candidatus Liberibacter asiaticus str. psy62]
(231 letters)
>gnl|CDD|179091 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional.
Length = 220
Score = 261 bits (670), Expect = 1e-70
Identities = 103/224 (45%), Positives = 135/224 (60%), Gaps = 8/224 (3%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
M ++K+ AA A +YV DGM +G+GTGSTA F+ L +++ G + +P+S +
Sbjct: 1 MTQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEGLIIGGVPTSEASTE 60
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
K IPL +V S+DL +DG DEID L LIKG G AL REKI+A AA RFI I D
Sbjct: 61 LAKELGIPLFDLNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIVD 120
Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
ESK VD LG+ LP+E+ F + L++ G ELR+ V+D GNYI
Sbjct: 121 ESKLVDVLGKFPLPVEVIPFARSAVARELEK----LGGQPELRMD----EPVVTDNGNYI 172
Query: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
+D FG IPDP+ + EL NIPGV+EHGLF N D ++GT DG
Sbjct: 173 LDVHFGRIPDPEALEKELNNIPGVVEHGLFANRADVVLVGTPDG 216
>gnl|CDD|161668 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model
describes ribose 5-phosphate isomerase, an enzyme of the
non-oxidative branch of the pentose phosphate pathway.
Length = 218
Score = 235 bits (602), Expect = 7e-63
Identities = 105/221 (47%), Positives = 139/221 (62%), Gaps = 7/221 (3%)
Query: 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVIPSSRNTENFCKI 64
+KR AA A +YV DGM +G+GTGST F+ L +++ G + +P+S+ T +
Sbjct: 1 LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGLDIVGVPTSKQTAELARE 60
Query: 65 HHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKR 124
IPL S ++V +DL+IDG DE+D L+LIKG GGALLREKI+A A+ RFIVI DESK
Sbjct: 61 LGIPLSSLDEVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKL 120
Query: 125 VDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAF 184
VD LG+ LP+E+ F A+ G LR + N G V+D GNYI+D
Sbjct: 121 VDKLGKFPLPVEVVPFAW----KAVARKLEKLGGEPTLR-QGNKGGPVVTDNGNYILDCH 175
Query: 185 FG-FIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
FG IPDP+ + EL +IPGV+E GLFI+M D I+GT DG
Sbjct: 176 FGKIIPDPEALEEELKSIPGVVETGLFIDMADTVIVGTKDG 216
>gnl|CDD|147924 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A
(phosphoriboisomerase A). This family consists of
several ribose 5-phosphate isomerase A or
phosphoriboisomerase A (EC:5.3.1.6) from bacteria,
eukaryotes and archaea.
Length = 172
Score = 209 bits (534), Expect = 6e-55
Identities = 88/173 (50%), Positives = 111/173 (64%), Gaps = 6/173 (3%)
Query: 52 IPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHA 111
+P+S TE K IPL ++V +DL+IDG DE+D L LIKG GGALLREKI+A A
Sbjct: 4 VPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIVASA 63
Query: 112 ASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGL 171
A +FIVI DESK VD LG+ LP+E+ F + L L+E G +LR+ G
Sbjct: 64 AKKFIVIVDESKLVDVLGKFPLPVEVVPFAWSYVLRRLEE----LGGEPKLRM--GEGGP 117
Query: 172 FVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
V+D GNYI+D FG I DP+ + EL NIPGV+EHGLF+ M D I+GT DG
Sbjct: 118 VVTDNGNYILDVHFGRIEDPEELEKELKNIPGVVEHGLFLGMADKVIVGTKDG 170
>gnl|CDD|178010 PLN02384, PLN02384, ribose-5-phosphate isomerase.
Length = 264
Score = 160 bits (406), Expect = 3e-40
Identities = 90/232 (38%), Positives = 132/232 (56%), Gaps = 8/232 (3%)
Query: 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQV--IPSSRNTENFC 62
++K+ AA +A+++V GM LG+GTGSTAK + + + + G + IP+S+ T
Sbjct: 34 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQA 93
Query: 63 KIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDES 122
IPL + VDL+IDG DE+D L L+KG GG+LLREK+I A +F+VI DES
Sbjct: 94 VSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDES 153
Query: 123 KRVDFLG--RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
K V +G +P+E+ F T L+ + G +LR + NG FV+D GNYI
Sbjct: 154 KLVKHIGGSGLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYI 213
Query: 181 VDAFFGF-IPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231
VD +F I D ++ S + + GV+EHG+F++M I+ GE V K
Sbjct: 214 VDLYFKRDIGDLKVASDAILRLAGVVEHGMFLDMATTVIVA---GELGVTIK 262
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional.
Length = 228
Score = 143 bits (362), Expect = 4e-35
Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 7/226 (3%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQVIPSSRNTE 59
D +K + + MTLG+GTGST + + +A I G+ + + +S
Sbjct: 2 KDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIA 61
Query: 60 NFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIG 119
K I + DV +DL+IDG DE+D L +IKG GGAL REK+I ASRF+V+
Sbjct: 62 FLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVV 121
Query: 120 DESKRVDFLGRGM-LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGN 178
DE+K V +LG LP+E+D+F L+++ S + E R+ + + F++D GN
Sbjct: 122 DETKIVQYLGETFKLPVEVDKF---NWYHILRKIESYADIKVERRVNEDVA--FITDNGN 176
Query: 179 YIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
YI+D DP L ++ GV E G F++M D I+GT +G
Sbjct: 177 YILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEG 222
>gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
Length = 505
Score = 29.6 bits (67), Expect = 0.74
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 9 NAARRAIQYVVDGMTLGMGTGS 30
A+ IQ VDG+ +GMG+GS
Sbjct: 301 YQAQNLIQAGVDGLRVGMGSGS 322
>gnl|CDD|162565 TIGR01862, N2-ase-Ialpha, nitrogenase component I, alpha chain.
This model represents the alpha chain of all three
varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of
nitrogenase.
Length = 443
Score = 29.3 bits (66), Expect = 0.88
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 135 IEIDQFGVNKTLSALKEVASCFGLNE 160
++ID FG T +L+ +A+ FG+ +
Sbjct: 266 MKIDFFGFTYTAESLRAIAAFFGIEK 291
>gnl|CDD|177945 PLN02311, PLN02311, chalcone isomerase.
Length = 271
Score = 28.8 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 54 SSRNTENFCKIHHIPLHSPEDVSSV 78
S RNT+N I+H P SP VS +
Sbjct: 4 SCRNTDNAESIYHFPGKSPNRVSVL 28
>gnl|CDD|185407 PTZ00035, PTZ00035, Rad51 protein; Provisional.
Length = 337
Score = 28.4 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 124 RVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGL 158
RVD+ GRG L Q + K L AL+++A F +
Sbjct: 227 RVDYSGRGELAER--QQHLGKFLRALQKLADEFNV 259
>gnl|CDD|117002 pfam08423, Rad51, Rad51. Rad51 is a DNA repair and recombination
protein and is a homologue of the bacterial ATPase RecA
protein.
Length = 261
Score = 28.4 bits (64), Expect = 1.6
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 124 RVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFG----LNEELRLRRNGSGLFVSD---- 175
R DF GRG L Q + K L +L+ +A FG + ++ + +G+ +F +D
Sbjct: 152 RTDFSGRGELAER--QQHLAKFLRSLQRLADEFGVAVVITNQVVAQVDGAAMFAADPKKP 209
Query: 176 -GGNYIVDA 183
GG+ + A
Sbjct: 210 IGGHIMAHA 218
>gnl|CDD|148423 pfam06807, Clp1, Pre-mRNA cleavage complex II protein Clp1. This
family consists of several pre-mRNA cleavage complex II
Clp1 (or HeaB) proteins. Six different protein factors
are required in vitro for 3' end formation of mammalian
pre-mRNAs by endonucleolytic cleavage and
polyadenylation. Clp1 is a subunit of cleavage complex
IIA, which is required for cleavage, but not for
polyadenylation of pre-mRNA.
Length = 187
Score = 28.4 bits (64), Expect = 1.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 95 IKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNK 144
+KG G LL I A + + +V+G E K L R + ++D + K
Sbjct: 3 VKGEGLELLLHAIRAFSPTHVVVLGQEEKLYPDLKRALKDKKVDVVELPK 52
>gnl|CDD|150454 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 508
Score = 27.9 bits (62), Expect = 2.1
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 86 DEIDSRLRLIKGYG----GALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFG 141
E+ L+L++ G L + + AH + + KR++FL G L +D
Sbjct: 214 GELQQLLKLLRAEGESEKQELQQYRQKAHRI-----LQSKEKRINFLKEGCLFEGLDSST 268
Query: 142 VNKTLSALKEVASCFGLNEELRL 164
L LK + + EE+
Sbjct: 269 AQIELEELKHESE--HVQEEITK 289
>gnl|CDD|150354 pfam09663, Amido_AtzD_TrzD, Amidohydrolase ring-opening protein
(Amido_AtzD_TrzD). Members of this family are
ring-opening amidohydrolases, including cyanuric acid
amidohydrolase (EC:3.5.2.15) (AtzD and TrzD) and
barbiturase. Note that barbiturase does not act as
defined for EC:3.5.2.1 (barbiturate + water = malonate
+ urea) but rather catalyses the ring opening of
barbiturase acid to ureidomalonic acid.
Length = 365
Score = 27.0 bits (60), Expect = 4.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 64 IHHIPLHSPEDVSSVDLSID 83
+ +P+HSP+DVS + ID
Sbjct: 3 VFRVPMHSPDDVSGLAALID 22
>gnl|CDD|179152 PRK00881, purH, bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional.
Length = 513
Score = 27.0 bits (61), Expect = 4.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 14 AIQYVVDGMTLGMGTG 29
AI Y DG T+G+G G
Sbjct: 415 AIVYAKDGQTVGIGAG 430
>gnl|CDD|129034 smart00798, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalysing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalysed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase (AICARFT), this enzyme catalyses the
formylation of AICAR with 10-formyl-tetrahydrofolate to
yield FAICAR and tetrahydrofolate. The last step is
catalysed by IMP (Inosine monophosphate) cyclohydrolase
(IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP.
Length = 311
Score = 26.7 bits (60), Expect = 5.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 14 AIQYVVDGMTLGMGTG 29
AI Y DG T+G+G G
Sbjct: 281 AIVYAKDGQTVGIGAG 296
>gnl|CDD|183313 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.
Length = 345
Score = 26.3 bits (59), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 102 LLREKIIAHAASRFIVIGDESKRVDFLGRGMLP 134
LL E ++ +R IV+ DES+R+ GR LP
Sbjct: 198 LLAEALLKLDPARPIVVEDESRRI---GRVHLP 227
>gnl|CDD|129071 smart00838, EFG_C, Elongation factor G C-terminus. This domain
includes the carboxyl terminal regions of Elongation
factor G, elongation factor 2 and some tetracycline
resistance proteins and adopt a ferredoxin-like fold.
Length = 85
Score = 26.3 bits (59), Expect = 7.5
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 117 VIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLF 172
VIGD + R RG + ++Q G + + A ++ FG +LR G +
Sbjct: 20 VIGDLNSR-----RGKI-EGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATW 69
>gnl|CDD|183984 PRK13340, PRK13340, alanine racemase; Reviewed.
Length = 406
Score = 26.1 bits (58), Expect = 8.6
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 70 HSP-EDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118
H P ED V + F E LI G L REKI H A+ + +
Sbjct: 202 HFPNEDEDEVRWKLAQFKE--QTAWLIGEAG--LKREKITLHVANSYATL 247
>gnl|CDD|180469 PRK06207, PRK06207, aspartate aminotransferase; Provisional.
Length = 405
Score = 25.9 bits (57), Expect = 8.9
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 123 KRVDFLGRGMLPIEIDQFGVNK 144
K V+F M+P+++D +K
Sbjct: 141 KLVEFFEGEMVPVQLDYLSADK 162
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.142 0.415
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,973,063
Number of extensions: 267107
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 27
Length of query: 231
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,049,753
Effective search space: 571015173
Effective search space used: 571015173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)