RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus str. psy62] (231 letters) >gnl|CDD|179091 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional. Length = 220 Score = 261 bits (670), Expect = 1e-70 Identities = 103/224 (45%), Positives = 135/224 (60%), Gaps = 8/224 (3%) Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60 M ++K+ AA A +YV DGM +G+GTGSTA F+ L +++ G + +P+S + Sbjct: 1 MTQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEGLIIGGVPTSEASTE 60 Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120 K IPL +V S+DL +DG DEID L LIKG G AL REKI+A AA RFI I D Sbjct: 61 LAKELGIPLFDLNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIVD 120 Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180 ESK VD LG+ LP+E+ F + L++ G ELR+ V+D GNYI Sbjct: 121 ESKLVDVLGKFPLPVEVIPFARSAVARELEK----LGGQPELRMD----EPVVTDNGNYI 172 Query: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224 +D FG IPDP+ + EL NIPGV+EHGLF N D ++GT DG Sbjct: 173 LDVHFGRIPDPEALEKELNNIPGVVEHGLFANRADVVLVGTPDG 216 >gnl|CDD|161668 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway. Length = 218 Score = 235 bits (602), Expect = 7e-63 Identities = 105/221 (47%), Positives = 139/221 (62%), Gaps = 7/221 (3%) Query: 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVIPSSRNTENFCKI 64 +KR AA A +YV DGM +G+GTGST F+ L +++ G + +P+S+ T + Sbjct: 1 LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGLDIVGVPTSKQTAELARE 60 Query: 65 HHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKR 124 IPL S ++V +DL+IDG DE+D L+LIKG GGALLREKI+A A+ RFIVI DESK Sbjct: 61 LGIPLSSLDEVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKL 120 Query: 125 VDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAF 184 VD LG+ LP+E+ F A+ G LR + N G V+D GNYI+D Sbjct: 121 VDKLGKFPLPVEVVPFAW----KAVARKLEKLGGEPTLR-QGNKGGPVVTDNGNYILDCH 175 Query: 185 FG-FIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224 FG IPDP+ + EL +IPGV+E GLFI+M D I+GT DG Sbjct: 176 FGKIIPDPEALEEELKSIPGVVETGLFIDMADTVIVGTKDG 216 >gnl|CDD|147924 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A (phosphoriboisomerase A). This family consists of several ribose 5-phosphate isomerase A or phosphoriboisomerase A (EC:5.3.1.6) from bacteria, eukaryotes and archaea. Length = 172 Score = 209 bits (534), Expect = 6e-55 Identities = 88/173 (50%), Positives = 111/173 (64%), Gaps = 6/173 (3%) Query: 52 IPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHA 111 +P+S TE K IPL ++V +DL+IDG DE+D L LIKG GGALLREKI+A A Sbjct: 4 VPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIVASA 63 Query: 112 ASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGL 171 A +FIVI DESK VD LG+ LP+E+ F + L L+E G +LR+ G Sbjct: 64 AKKFIVIVDESKLVDVLGKFPLPVEVVPFAWSYVLRRLEE----LGGEPKLRM--GEGGP 117 Query: 172 FVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224 V+D GNYI+D FG I DP+ + EL NIPGV+EHGLF+ M D I+GT DG Sbjct: 118 VVTDNGNYILDVHFGRIEDPEELEKELKNIPGVVEHGLFLGMADKVIVGTKDG 170 >gnl|CDD|178010 PLN02384, PLN02384, ribose-5-phosphate isomerase. Length = 264 Score = 160 bits (406), Expect = 3e-40 Identities = 90/232 (38%), Positives = 132/232 (56%), Gaps = 8/232 (3%) Query: 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQV--IPSSRNTENFC 62 ++K+ AA +A+++V GM LG+GTGSTAK + + + + G + IP+S+ T Sbjct: 34 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQA 93 Query: 63 KIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDES 122 IPL + VDL+IDG DE+D L L+KG GG+LLREK+I A +F+VI DES Sbjct: 94 VSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDES 153 Query: 123 KRVDFLG--RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180 K V +G +P+E+ F T L+ + G +LR + NG FV+D GNYI Sbjct: 154 KLVKHIGGSGLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYI 213 Query: 181 VDAFFGF-IPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231 VD +F I D ++ S + + GV+EHG+F++M I+ GE V K Sbjct: 214 VDLYFKRDIGDLKVASDAILRLAGVVEHGMFLDMATTVIVA---GELGVTIK 262 >gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional. Length = 228 Score = 143 bits (362), Expect = 4e-35 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQVIPSSRNTE 59 D +K + + MTLG+GTGST + + +A I G+ + + +S Sbjct: 2 KDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIA 61 Query: 60 NFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIG 119 K I + DV +DL+IDG DE+D L +IKG GGAL REK+I ASRF+V+ Sbjct: 62 FLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVV 121 Query: 120 DESKRVDFLGRGM-LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGN 178 DE+K V +LG LP+E+D+F L+++ S + E R+ + + F++D GN Sbjct: 122 DETKIVQYLGETFKLPVEVDKF---NWYHILRKIESYADIKVERRVNEDVA--FITDNGN 176 Query: 179 YIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224 YI+D DP L ++ GV E G F++M D I+GT +G Sbjct: 177 YILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEG 222 >gnl|CDD|177913 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase. Length = 505 Score = 29.6 bits (67), Expect = 0.74 Identities = 11/22 (50%), Positives = 15/22 (68%) Query: 9 NAARRAIQYVVDGMTLGMGTGS 30 A+ IQ VDG+ +GMG+GS Sbjct: 301 YQAQNLIQAGVDGLRVGMGSGS 322 >gnl|CDD|162565 TIGR01862, N2-ase-Ialpha, nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase. Length = 443 Score = 29.3 bits (66), Expect = 0.88 Identities = 9/26 (34%), Positives = 17/26 (65%) Query: 135 IEIDQFGVNKTLSALKEVASCFGLNE 160 ++ID FG T +L+ +A+ FG+ + Sbjct: 266 MKIDFFGFTYTAESLRAIAAFFGIEK 291 >gnl|CDD|177945 PLN02311, PLN02311, chalcone isomerase. Length = 271 Score = 28.8 bits (64), Expect = 1.3 Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 54 SSRNTENFCKIHHIPLHSPEDVSSV 78 S RNT+N I+H P SP VS + Sbjct: 4 SCRNTDNAESIYHFPGKSPNRVSVL 28 >gnl|CDD|185407 PTZ00035, PTZ00035, Rad51 protein; Provisional. Length = 337 Score = 28.4 bits (64), Expect = 1.5 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Query: 124 RVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGL 158 RVD+ GRG L Q + K L AL+++A F + Sbjct: 227 RVDYSGRGELAER--QQHLGKFLRALQKLADEFNV 259 >gnl|CDD|117002 pfam08423, Rad51, Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein. Length = 261 Score = 28.4 bits (64), Expect = 1.6 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 11/69 (15%) Query: 124 RVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFG----LNEELRLRRNGSGLFVSD---- 175 R DF GRG L Q + K L +L+ +A FG + ++ + +G+ +F +D Sbjct: 152 RTDFSGRGELAER--QQHLAKFLRSLQRLADEFGVAVVITNQVVAQVDGAAMFAADPKKP 209 Query: 176 -GGNYIVDA 183 GG+ + A Sbjct: 210 IGGHIMAHA 218 >gnl|CDD|148423 pfam06807, Clp1, Pre-mRNA cleavage complex II protein Clp1. This family consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins. Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA. Length = 187 Score = 28.4 bits (64), Expect = 1.7 Identities = 15/50 (30%), Positives = 24/50 (48%) Query: 95 IKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNK 144 +KG G LL I A + + +V+G E K L R + ++D + K Sbjct: 3 VKGEGLELLLHAIRAFSPTHVVVLGQEEKLYPDLKRALKDKKVDVVELPK 52 >gnl|CDD|150454 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1. Length = 508 Score = 27.9 bits (62), Expect = 2.1 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 11/83 (13%) Query: 86 DEIDSRLRLIKGYG----GALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFG 141 E+ L+L++ G L + + AH + + KR++FL G L +D Sbjct: 214 GELQQLLKLLRAEGESEKQELQQYRQKAHRI-----LQSKEKRINFLKEGCLFEGLDSST 268 Query: 142 VNKTLSALKEVASCFGLNEELRL 164 L LK + + EE+ Sbjct: 269 AQIELEELKHESE--HVQEEITK 289 >gnl|CDD|150354 pfam09663, Amido_AtzD_TrzD, Amidohydrolase ring-opening protein (Amido_AtzD_TrzD). Members of this family are ring-opening amidohydrolases, including cyanuric acid amidohydrolase (EC:3.5.2.15) (AtzD and TrzD) and barbiturase. Note that barbiturase does not act as defined for EC:3.5.2.1 (barbiturate + water = malonate + urea) but rather catalyses the ring opening of barbiturase acid to ureidomalonic acid. Length = 365 Score = 27.0 bits (60), Expect = 4.2 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 64 IHHIPLHSPEDVSSVDLSID 83 + +P+HSP+DVS + ID Sbjct: 3 VFRVPMHSPDDVSGLAALID 22 >gnl|CDD|179152 PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional. Length = 513 Score = 27.0 bits (61), Expect = 4.6 Identities = 9/16 (56%), Positives = 11/16 (68%) Query: 14 AIQYVVDGMTLGMGTG 29 AI Y DG T+G+G G Sbjct: 415 AIVYAKDGQTVGIGAG 430 >gnl|CDD|129034 smart00798, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP. Length = 311 Score = 26.7 bits (60), Expect = 5.4 Identities = 9/16 (56%), Positives = 11/16 (68%) Query: 14 AIQYVVDGMTLGMGTG 29 AI Y DG T+G+G G Sbjct: 281 AIVYAKDGQTVGIGAG 296 >gnl|CDD|183313 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional. Length = 345 Score = 26.3 bits (59), Expect = 6.5 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%) Query: 102 LLREKIIAHAASRFIVIGDESKRVDFLGRGMLP 134 LL E ++ +R IV+ DES+R+ GR LP Sbjct: 198 LLAEALLKLDPARPIVVEDESRRI---GRVHLP 227 >gnl|CDD|129071 smart00838, EFG_C, Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 85 Score = 26.3 bits (59), Expect = 7.5 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 117 VIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLF 172 VIGD + R RG + ++Q G + + A ++ FG +LR G + Sbjct: 20 VIGDLNSR-----RGKI-EGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATW 69 >gnl|CDD|183984 PRK13340, PRK13340, alanine racemase; Reviewed. Length = 406 Score = 26.1 bits (58), Expect = 8.6 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 70 HSP-EDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118 H P ED V + F E LI G L REKI H A+ + + Sbjct: 202 HFPNEDEDEVRWKLAQFKE--QTAWLIGEAG--LKREKITLHVANSYATL 247 >gnl|CDD|180469 PRK06207, PRK06207, aspartate aminotransferase; Provisional. Length = 405 Score = 25.9 bits (57), Expect = 8.9 Identities = 7/22 (31%), Positives = 13/22 (59%) Query: 123 KRVDFLGRGMLPIEIDQFGVNK 144 K V+F M+P+++D +K Sbjct: 141 KLVEFFEGEMVPVQLDYLSADK 162 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.142 0.415 Gapped Lambda K H 0.267 0.0783 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,973,063 Number of extensions: 267107 Number of successful extensions: 521 Number of sequences better than 10.0: 1 Number of HSP's gapped: 510 Number of HSP's successfully gapped: 27 Length of query: 231 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 141 Effective length of database: 4,049,753 Effective search space: 571015173 Effective search space used: 571015173 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (24.9 bits)