HHsearch alignment for GI: 254781055 and conserved domain: COG0446
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].
Probab=99.96 E-value=3.4e-29 Score=233.25 Aligned_cols=378 Identities=18% Similarity=0.216 Sum_probs=252.6
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCC--CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 899889867999999999889--9299997787--861464356827088999999999998410177363775449999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLG--KKVAICEEYR--VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g--~kV~liE~~~--~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~~~~ 55 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPL-----------------------SLYV--GGGIASLED 55 (415)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-----------------------CEEE--CCCCCCCHH
T ss_conf 989825599999999998507778859995235445555762-----------------------3053--344234002
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CCCCCC--CCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 9999999998554668864300332001223-322222--2222223221100111232277640233203762211237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASK-GILSSP--HSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~~~~~--~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~~~ts~ 159 (461)
T Consensus 56 ~~~~-------~~----~~-~~~~i~~~~~~~v~~id~~~~~v~~~--~g~~~yd~LvlatGa~~~~~~~~~~~~~~~~~ 121 (415)
T COG0446 56 LRYP-------PR----FN-RATGIDVRTGTEVTSIDPENKVVLLD--DGEIEYDYLVLATGARPRPPPISDWEGVVTLR 121 (415)
T ss_pred HCCC-------CC----HH-HCCCEEECCCCEEEECCCHHCEEEEC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 1156-------42----34-31672860364687226123569915--87072652588147655667754222443246
Q ss_pred CCCCC------CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 85112------33334432123454530112442101221000001111222222-321222222222223323322000
Q gi|254781055|r 160 EIFSL------KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFD-SDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 160 ~~~~l------~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d-~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
T Consensus 122 ~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 201 (415)
T COG0446 122 LREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKV 201 (415)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 89999876535667773999893499999999998779938999756642331121889999999999729489826526
Q ss_pred EECCCCCCCCE---EEEECCCCCCCCCCEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCC-EEEEEEECCCCCC
Q ss_conf 11024457610---243127532222100001522200126841123-211235433445743000-0355871254326
Q gi|254781055|r 233 ESVVSESGQLK---SILKSGKIVKTDQVILAVGRTPRTTGIGLEKVG-VKMDENGFIITDCYSRTN-VQSIFSLGDISGH 307 (461)
Q Consensus 233 ~~i~~~~~~~~---~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~g-i~~~~~G~i~vd~~~~Ts-~~~IyA~GDv~g~ 307 (461)
T Consensus 202 ~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~--~~~~~~~~~~~g~i~v~~~~~~~~~~~vya~GD~~~~ 279 (415)
T COG0446 202 VGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLA--NDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEI 279 (415)
T ss_pred EEEEECCCCEEEEEEEEEEEEEECCCEEEECCCCCCCCCCC--CCCCCCCCCCCCCEEEECCCCEECCCCEEEECCCEEC
T ss_conf 99992586215544566530352233698789757761015--4654440137872999824542166888980332002
Q ss_pred C----------CCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEE--EHHHHHHHCCCHHHHHHCCCCEEEEEEEECCC
Q ss_conf 4----------31000000111101220588754332333333123--06887551689889985499479999830313
Q gi|254781055|r 308 I----------QLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVF--SKPEIASVGLTEEEAVQKFCRLEIYKTKFFPM 375 (461)
Q Consensus 308 ~----------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~if--t~peiA~VG~te~~a~~~~~~~~v~~~~~~~~ 375 (461)
T Consensus 280 ~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~~~~~~~~ 353 (415)
T COG0446 280 PAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRI--PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVLVVSGGKD 353 (415)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC--CCCCCCEEEECCCEEEEEEEECCC--CEEEEE-EEEEECCCCC
T ss_conf 4432220123101244554300245540344-333--323451144047614677750355--223345-5566414565
Q ss_pred HHH-HHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 668-7479984079999978998699999981998899999999998679878996378
Q gi|254781055|r 376 KCF-LSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCM 433 (461)
Q Consensus 376 ~~~-~~~~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~ 433 (461)
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (415)
T COG0446 354 PRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALD 410 (415)
T ss_pred CHHHCCCCCCCCCEEEEECCCCCCCCCCHH-HH-HHHHHHHHHHHHHHCCCCHHHHHCC
T ss_conf 311126776433303541155210022101-36-8888644555410101200212010