HHsearch alignment for GI: 254781055 and conserved domain: COG0493
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].
Probab=97.58 E-value=6.3e-05 Score=55.06 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=66.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 4432123454530112442101221000001111222---------2223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS---------KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~---------~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~----- 198 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR----- 198 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCCEEEECCEECC-----
T ss_conf 679998889515558899986898799826667774479814844646420689999999874909998667799-----
Q ss_pred CCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 761024312753222210000152-220
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
T Consensus 199 ---~it~~~-L~~e~Dav~l~~G~~~~~ 222 (457)
T COG0493 199 ---DITLEE-LLKEYDAVFLATGAGKPR 222 (457)
T ss_pred ---CCCHHH-HHHHHCEEEEECCCCCCC
T ss_conf ---678999-865328799932667887