HHsearch alignment for GI: 254781055 and conserved domain: COG0493

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].
Probab=97.58  E-value=6.3e-05  Score=55.06  Aligned_cols=89  Identities=24%  Similarity=0.289  Sum_probs=66.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf             4432123454530112442101221000001111222---------2223212222222222233233220001102445
Q gi|254781055|r  169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS---------KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES  239 (461)
Q Consensus       169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~---------~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~  239 (461)
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~-----  198 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR-----  198 (457)
T ss_pred             CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCCEEEECCEECC-----
T ss_conf             679998889515558899986898799826667774479814844646420689999999874909998667799-----


Q ss_pred             CCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf             761024312753222210000152-220
Q gi|254781055|r  240 GQLKSILKSGKIVKTDQVILAVGR-TPR  266 (461)
Q Consensus       240 ~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn  266 (461)
T Consensus       199 ---~it~~~-L~~e~Dav~l~~G~~~~~  222 (457)
T COG0493         199 ---DITLEE-LLKEYDAVFLATGAGKPR  222 (457)
T ss_pred             ---CCCHHH-HHHHHCEEEEECCCCCCC
T ss_conf             ---678999-865328799932667887