HHsearch alignment for GI: 254781055 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=100.00 E-value=4.3e-34 Score=269.24 Aligned_cols=278 Identities=19% Similarity=0.311 Sum_probs=207.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 6899889867999999999889--92999977878614643568270889999999999984101773637754499999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG--KKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---------l~~plL~ev---------a-------~g~l~~~~i 59 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---------LFTPLLYEV---------A-------TGTLSESEI 59 (405)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC---------CCCHHHHHH---------H-------CCCCCHHHE
T ss_conf 699989867999999976416788718999188766---------663033556---------3-------287775652
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCC--CCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCC-CCCCC--
Q ss_conf 999999998554668864300-33200122332222--2222222322110011123227764023320376-22112--
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLES-AGVEIFASKGILSS--PHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGS-DLCIT-- 157 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~-~gv~vi~g~a~~~~--~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~-~~~~t-- 157 (461)
T Consensus 60 ~~p-----------~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~-~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lk 127 (405)
T COG1252 60 AIP-----------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLAD-LGEISYDYLVVALGSETNYFGIPGAAEYAFGLK 127 (405)
T ss_pred ECC-----------HHHHHCCCCCEEEEEEEEEEECCCCCEEEECC-CCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCC
T ss_conf 130-----------89984235744899978999715679899578-870236389994587667689978787077778
Q ss_pred -CCCCCCC-----------CCCCC-----CCCCCCCCCCCCHHHHHHHCC-------------CCCCCEECCCCCCCCCC
Q ss_conf -3785112-----------33334-----432123454530112442101-------------22100000111122222
Q gi|254781055|r 158 -SDEIFSL-----------KSLPQ-----STLIIGGGYIAVEFAGILNSL-------------GSKTTLVTRGNSILSKF 207 (461)
Q Consensus 158 -s~~~~~l-----------~~~P~-----~i~IiGgG~ig~E~A~~~~~l-------------G~~Vtli~~~~~~l~~~ 207 (461)
T Consensus 128 s~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~ 207 (405)
T COG1252 128 TLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMF 207 (405)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCCCC
T ss_conf 89999999999999999863356434411899989882389999999999998765334786531899982571213588
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCC-CCCCCCEECCCCEEEECCCCCCC-CCCCCCCCCCC
Q ss_conf 23212222222222233233220001102445761024312753-22221000015222001268411-23211235433
Q gi|254781055|r 208 DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKI-VKTDQVILAVGRTPRTTGIGLEK-VGVKMDENGFI 285 (461)
Q Consensus 208 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~-~~~D~vl~a~Gr~Pn~~~l~L~~-~gi~~~~~G~i 285 (461)
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~---~~~l~~~e~dr~Grl 280 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPL---LKDLSGLETDRRGRL 280 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEECCCCEEEECCCC----EEECCCCEEEECCEEEECCCCCCCHH---HHHCCHHHHCCCCCE
T ss_conf 88999999999998797898698148976991----79755883776277998577757866---663270221348977
Q ss_pred CCCCCCCC-CEEEEEEECCCCC------CCCCCCHHHCCCCCCHHHHCC
Q ss_conf 44574300-0035587125432------643100000011110122058
Q gi|254781055|r 286 ITDCYSRT-NVQSIFSLGDISG------HIQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 286 ~vd~~~~T-s~~~IyA~GDv~g------~~~l~~~A~~~g~~aa~~i~~ 327 (461)
T Consensus 281 ~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 281 VVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred EECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7578751699898699711103768887998118899999999999999