HHsearch alignment for GI: 254781055 and conserved domain: COG3634

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.93  E-value=2.5e-26  Score=212.22  Aligned_cols=278  Identities=23%  Similarity=0.317  Sum_probs=190.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf             65468998898679999999998899299997787861464356827088999999999998410177363775449999
Q gi|254781055|r    3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS   82 (461)
Q Consensus         3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~   82 (461)
T Consensus       210 ~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~-aerfGGQvldT~-----------~----IENf------Isv~~teGpk  267 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDTM-----------G----IENF------ISVPETEGPK  267 (520)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCHHHHH-HHHHCCEECCCC-----------C----HHHE------ECCCCCCCHH
T ss_conf             8834999868863167899998612111001-565188200000-----------3----3330------0565454668


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEECCCC--------CCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf             9999999998554668864300332001223--------32222222222232211001112322776402332037622
Q gi|254781055|r   83 LITAQNKELSRLESFYHNRLESAGVEIFASK--------GILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL  154 (461)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~--------a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~  154 (461)
T Consensus       268 l~~ale~Hv~~Y-----------~vDimn~qra~~l~~a~~~~~l~ev~l~n-GavLkaktvIlstGArWRn~nvPGE~e  335 (520)
T COG3634         268 LAAALEAHVKQY-----------DVDVMNLQRASKLEPAAVEGGLIEVELAN-GAVLKARTVILATGARWRNMNVPGEDE  335 (520)
T ss_pred             HHHHHHHHHHHC-----------CCHHHHHHHHHCCEECCCCCCCEEEEECC-CCEECCCEEEEECCCCHHCCCCCCHHH
T ss_conf             999999987646-----------82455334342020157888607999547-835113169984276420089985688


Q ss_pred             C--------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf             1--------123785112333344321234545301124421012210000011112222223212222222222-2332
Q gi|254781055|r  155 C--------ITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS-RGMQ  225 (461)
Q Consensus       155 ~--------~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~Gv~  225 (461)
T Consensus       336 ~rnKGVayCPHCDGPLF---~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk--AD----~VLq~kl~sl~Nv~  406 (520)
T COG3634         336 YRNKGVAYCPHCDGPLF---KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK--AD----AVLQDKLRSLPNVT  406 (520)
T ss_pred             HHHCCEEECCCCCCCCC---CCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCHHHH--HH----HHHHHHHHCCCCCE
T ss_conf             73178266888998651---79647998888612888876775555131121060321--57----89999973279848


Q ss_pred             CCCCCEEEECCCCCCCCEE-E---EECCC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             3322000110244576102-4---31275--3222210000152220012684112321123543344574300003558
Q gi|254781055|r  226 VFHNDTIESVVSESGQLKS-I---LKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF  299 (461)
Q Consensus       226 i~~~~~v~~i~~~~~~~~~-~---~~~g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~Iy  299 (461)
T Consensus       407 ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WL--kg~-Vel~~rGEIivD~~g~T~vpGvF  483 (520)
T COG3634         407 IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL--KGA-VELNRRGEIIVDARGETNVPGVF  483 (520)
T ss_pred             EEECCEEEEEECCCCEECCEEEEECCCCCEEEEEEEEEEEEEECCCCHHHH--HCH-HHCCCCCCEEEECCCCCCCCCEE
T ss_conf             982231468764775011327785367854678740158997034681676--151-11176764788557876787235


Q ss_pred             EECCCCCCC-CCCCHHHCCCCCCHHHHC
Q ss_conf             712543264-310000001111012205
Q gi|254781055|r  300 SLGDISGHI-QLTPVAIHAAACFVETVF  326 (461)
Q Consensus       300 A~GDv~g~~-~l~~~A~~~g~~aa~~i~  326 (461)
T Consensus       484 AAGD~T~~~yKQIIIamG~GA~AaL~AF  511 (520)
T COG3634         484 AAGDCTTVPYKQIIIAMGEGAKASLSAF  511 (520)
T ss_pred             ECCCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf             3375357741048998267513333331