HHsearch alignment for GI: 254781055 and conserved domain: COG3634
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.93 E-value=2.5e-26 Score=212.22 Aligned_cols=278 Identities=23% Similarity=0.317 Sum_probs=190.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 65468998898679999999998899299997787861464356827088999999999998410177363775449999
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
T Consensus 210 ~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~-aerfGGQvldT~-----------~----IENf------Isv~~teGpk 267 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDTM-----------G----IENF------ISVPETEGPK 267 (520)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCHHHHH-HHHHCCEECCCC-----------C----HHHE------ECCCCCCCHH
T ss_conf 8834999868863167899998612111001-565188200000-----------3----3330------0565454668
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCC--------CCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 9999999998554668864300332001223--------32222222222232211001112322776402332037622
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASK--------GILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL 154 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~--------a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~ 154 (461)
T Consensus 268 l~~ale~Hv~~Y-----------~vDimn~qra~~l~~a~~~~~l~ev~l~n-GavLkaktvIlstGArWRn~nvPGE~e 335 (520)
T COG3634 268 LAAALEAHVKQY-----------DVDVMNLQRASKLEPAAVEGGLIEVELAN-GAVLKARTVILATGARWRNMNVPGEDE 335 (520)
T ss_pred HHHHHHHHHHHC-----------CCHHHHHHHHHCCEECCCCCCCEEEEECC-CCEECCCEEEEECCCCHHCCCCCCHHH
T ss_conf 999999987646-----------82455334342020157888607999547-835113169984276420089985688
Q ss_pred C--------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 1--------123785112333344321234545301124421012210000011112222223212222222222-2332
Q gi|254781055|r 155 C--------ITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS-RGMQ 225 (461)
Q Consensus 155 ~--------~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~Gv~ 225 (461)
T Consensus 336 ~rnKGVayCPHCDGPLF---~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk--AD----~VLq~kl~sl~Nv~ 406 (520)
T COG3634 336 YRNKGVAYCPHCDGPLF---KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK--AD----AVLQDKLRSLPNVT 406 (520)
T ss_pred HHHCCEEECCCCCCCCC---CCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCHHHH--HH----HHHHHHHHCCCCCE
T ss_conf 73178266888998651---79647998888612888876775555131121060321--57----89999973279848
Q ss_pred CCCCCEEEECCCCCCCCEE-E---EECCC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 3322000110244576102-4---31275--3222210000152220012684112321123543344574300003558
Q gi|254781055|r 226 VFHNDTIESVVSESGQLKS-I---LKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299 (461)
Q Consensus 226 i~~~~~v~~i~~~~~~~~~-~---~~~g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~Iy 299 (461)
T Consensus 407 ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WL--kg~-Vel~~rGEIivD~~g~T~vpGvF 483 (520)
T COG3634 407 IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL--KGA-VELNRRGEIIVDARGETNVPGVF 483 (520)
T ss_pred EEECCEEEEEECCCCEECCEEEEECCCCCEEEEEEEEEEEEEECCCCHHHH--HCH-HHCCCCCCEEEECCCCCCCCCEE
T ss_conf 982231468764775011327785367854678740158997034681676--151-11176764788557876787235
Q ss_pred EECCCCCCC-CCCCHHHCCCCCCHHHHC
Q ss_conf 712543264-310000001111012205
Q gi|254781055|r 300 SLGDISGHI-QLTPVAIHAAACFVETVF 326 (461)
Q Consensus 300 A~GDv~g~~-~l~~~A~~~g~~aa~~i~ 326 (461)
T Consensus 484 AAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 484 AAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ECCCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf 3375357741048998267513333331