HHsearch alignment for GI: 254781055 and conserved domain: PRK12770
>PRK12770 putative glutamate synthase subunit beta; Provisional.
Probab=100.00 E-value=1.4e-42 Score=331.59 Aligned_cols=289 Identities=18% Similarity=0.262 Sum_probs=189.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 54689988986799999999988992999977878614643568270889999999999984101773637754499999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
T Consensus 17 gkkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gi-p~~~~p~-~~~~~~~~~l~~~g~~~~~~~------ 88 (350)
T PRK12770 17 GKKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGI-PEFRIPI-ERVREGVRELEELGVVFHTRT------ 88 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE-CCCCCCH-HHHHHHHHHHHHHCCEEECCE------
T ss_conf 79899999558899999999978998599953696982899834-7976668-899999999997097697320------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCCC--CCCCCC
Q ss_conf 99999999855466886430033200122332222222222232211001112322776-402332037622--112378
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSDL--CITSDE 160 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~~--~~ts~~ 160 (461)
T Consensus 89 -----------------~v-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~daviiAtG~~~~r~l~ipG~~~~gv~~~~~ 148 (350)
T PRK12770 89 -----------------KV-YCDEPPHEEEGDEFVEDFVSL--EELVEEYDAVLIATGTWKSRKLGIPGENLPGVYSALE 148 (350)
T ss_pred -----------------EE-EEECCEEEEECCEEEEEEEEH--HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEHHH
T ss_conf -----------------99-850201133032035776018--9877418999996589977358988745678086478
Q ss_pred C-----------CCCCCC----CCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5-----------112333----34432123454530112442101221-0000011112222223212222222222233
Q gi|254781055|r 161 I-----------FSLKSL----PQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSILSKFDSDIRQGLTDVMISRGM 224 (461)
Q Consensus 161 ~-----------~~l~~~----P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv 224 (461)
T Consensus 149 ~l~~~~~~~~~~~~~~~~~~~~gk~vvVvGgG~~a~e~A~~~~~~Ga~~v~l~~r~~~~----~~~~~~~~~~~l~~~gv 224 (350)
T PRK12770 149 YLFRIRAARLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAKLLGAEKVYMAYRRTIN----EAPAGKYEIERLIERGV 224 (350)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHH----CCCCCHHHHHHHHHCCC
T ss_conf 78776534353355344665589889998986456799999997599689999666500----28618999999997698
Q ss_pred CCCCCCEEEECCCCCCCCEEEE------------------E--CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 2332200011024457610243------------------1--2753222210000152220012684112321123543
Q gi|254781055|r 225 QVFHNDTIESVVSESGQLKSIL------------------K--SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGF 284 (461)
Q Consensus 225 ~i~~~~~v~~i~~~~~~~~~~~------------------~--~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~ 284 (461)
T Consensus 225 ~~~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~D~vlvavG~~P~~~~--~~~~gv~ld~~G~ 302 (350)
T PRK12770 225 EFLELVTPVRIIGEGKVEAVELAKMRLGEPDESGRPRPEPIPGSEFVLEADTVITAIGEIPTPPF--KKELGIELNRDGE 302 (350)
T ss_pred EEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCEEEEEECCCCCCCH--HHHCCEEECCCCE
T ss_conf 89974522999827967899999988605666774553121374103105789999777788413--5415912889981
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 344574300003558712543264310000001111012205
Q gi|254781055|r 285 IITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 285 i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
T Consensus 303 I~vd~~~~TsvpgIyAaGDv~~g~~~a~~A~~eG~~AA~~i~ 344 (350)
T PRK12770 303 IKVDEKHMTSREGVFAAGDVVTGPSKIGKALKSGLRAAQSIH 344 (350)
T ss_pred EEECCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 986989744899999801687888899999999999999999