HHsearch alignment for GI: 254781055 and conserved domain: PRK12778
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional.
Probab=99.96 E-value=6.7e-29 Score=231.10 Aligned_cols=272 Identities=22% Similarity=0.369 Sum_probs=188.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-H
Q ss_conf 468998898679999999998899299997787-86146435682708899999999999841017736377544999-9
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-S 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~ 82 (461)
T Consensus 440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG--~L~yGIP~---------------------------fRLPk~ 490 (760)
T PRK12778 440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGG--VLKYGIPE---------------------------FRLPNK 490 (760)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--EEEECCCC---------------------------CCCCHH
T ss_conf 9899989778999999999977990699805888897--57654861---------------------------108789
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCC
Q ss_conf 9999999998554668864300332001223322222222222322110011123227764-02332037622--11237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~ 159 (461)
T Consensus 491 iv~~---eI--------~~l~~lGV~~~~n~--~vG-kdit~~eL~~-egyDAVfla~Ga~~pr~l~IpGe~l~gV~~a~ 555 (760)
T PRK12778 491 IVDV---EI--------ENLVKMGVTFEKDC--IVG-KTISVEELEE-EGFKGIFVASGAGLPNFMNIPGENSINIMSSN 555 (760)
T ss_pred HHHH---HH--------HHHHHCCCEEECCC--EEC-CCCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCEEHH
T ss_conf 9999---99--------99986497998995--778-8689999975-88999999406787752899986677858779
Q ss_pred CCCC---C-------C----CCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8511---2-------3----3334432123454530112442101221-000001111-222222321222222222223
Q gi|254781055|r 160 EIFS---L-------K----SLPQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNS-ILSKFDSDIRQGLTDVMISRG 223 (461)
Q Consensus 160 ~~~~---l-------~----~~P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~G 223 (461)
T Consensus 556 eFL~~vnl~~~~~~~~~~p~~~Gk~VvVIGGGntAmD~artA~RlGAe~V~ivyRR~~~emPA~~~E-----i~~A~eEG 630 (760)
T PRK12778 556 EYLTRVNLMDAASPDSDTPVAFGKNVAVIGGGNTAMDSVRTAKRLGAERAMIIYRRSEEEMPARLEE-----VKHAKEEG 630 (760)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHH-----HHHHHHCC
T ss_conf 9999976443026667874226988999999760999999999839986999703772119999899-----99998579
Q ss_pred CCCCCCCEEEECCC-CCCCCE------EEE----ECC-----------CCCCCCCCEECCCCEEEECCCCCCCCCCCCCC
Q ss_conf 32332200011024-457610------243----127-----------53222210000152220012684112321123
Q gi|254781055|r 224 MQVFHNDTIESVVS-ESGQLK------SIL----KSG-----------KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDE 281 (461)
Q Consensus 224 v~i~~~~~v~~i~~-~~~~~~------~~~----~~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~ 281 (461)
T Consensus 631 V~f~~l~~P~~i~~de~G~v~gv~~~~~elgepD~sGR~~p~~i~gse~~i~aD~VI~AIGq~~~~~~~-~~~~gl~~~~ 709 (760)
T PRK12778 631 IEFLTLHNPIEYIADEQGRVKQVILQKMELGEPDASGRRSPVAIPGATETIDIDLAIVSVGVSPNPIVP-SSIPGLELGR 709 (760)
T ss_pred CEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCEEECC
T ss_conf 889916897899977996699999999997553777888735659946999999999998689886521-1366725779
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 543344574300003558712543264310000001111012205
Q gi|254781055|r 282 NGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 282 ~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
T Consensus 710 ~G~i~vd~~~~Ts~~gVFAgGD~v~G~~tVV~Ai~~Gr~AA~~Id 754 (760)
T PRK12778 710 KGTIAVDDNMQSSIPGIYAGGDIVRGGATVILAMGDGRRAAAAMN 754 (760)
T ss_pred CCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 997883989634898999867867680599999999999999999