HHsearch alignment for GI: 254781055 and conserved domain: PRK12814
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.
Probab=99.96 E-value=1.4e-29 Score=236.16 Aligned_cols=268 Identities=22% Similarity=0.370 Sum_probs=190.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-HH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999-99
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-SL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~~ 83 (461)
T Consensus 195 kVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGm-lryG-IP---------------------------~yRLPk~v 245 (652)
T PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM-MRYG-IP---------------------------RFRLPESV 245 (652)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE-EEEC-CC---------------------------CCCCCHHH
T ss_conf 7999683789999999999779906998158888986-7644-86---------------------------33389999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCCC
Q ss_conf 999999998554668864300332001223322222222222322110011123227764-02332037622--112378
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSDE 160 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~~ 160 (461)
T Consensus 246 ld---~EI~--------~i~~~GV~~~~n~~-v-G-~ditl~~L~~--~yDAVflaiGa~~~r~L~ipGedl~gV~~avd 309 (652)
T PRK12814 246 ID---ADIA--------PLRAMGAEFRFNTV-F-G-RDITLEELQK--EFDAVLLAVGAQKASKMGIPGEELPGVISGID 309 (652)
T ss_pred HH---HHHH--------HHHHCCCEEEEEEE-E-C-CCCCHHHHHH--HCCEEEEEECCCCCCCCCCCCCCCCCEEEHHH
T ss_conf 99---9999--------99971985886679-4-7-7477999986--58999997557877447988887877276899
Q ss_pred CC------CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 51------1233334432123454530112442101221-000001111-222222321222222222223323322000
Q gi|254781055|r 161 IF------SLKSLPQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNS-ILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 161 ~~------~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
T Consensus 310 fL~~v~~g~~~~~GkkVvVIGGGNtAmD~ARTA~RlGA~~VtivyRRt~~eMpA~~~Ei~-----eA~eEGV~~~~l~~P 384 (652)
T PRK12814 310 FLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIE-----EALAEGVSLRELAAP 384 (652)
T ss_pred HHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHH-----HHHHCCCCEEECCCC
T ss_conf 999852698666788524866881389999999874897589983376331999867777-----888679846976155
Q ss_pred EECCCCCCCCEEEE---------ECC-----------CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 11024457610243---------127-----------532222100001522200126841123211235433445-743
Q gi|254781055|r 233 ESVVSESGQLKSIL---------KSG-----------KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITD-CYS 291 (461)
Q Consensus 233 ~~i~~~~~~~~~~~---------~~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd-~~~ 291 (461)
T Consensus 385 ~~i~~~~g~~~~~~~~~~~ge~D~sGR~~pv~v~gse~~i~aD~VI~AIGQ~~d~~~--~~~~gl~~~~~G~i~vd~~t~ 462 (652)
T PRK12814 385 VSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSRNGTVKVDPETL 462 (652)
T ss_pred EEEEEECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCH--HHCCCCCCCCCCCEEECCCCC
T ss_conf 899986896899999999968878897724565996699617889984587888332--224586366899888588887
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHH
Q ss_conf 0000355871254326431000000111101220
Q gi|254781055|r 292 RTNVQSIFSLGDISGHIQLTPVAIHAAACFVETV 325 (461)
Q Consensus 292 ~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 325 (461)
T Consensus 463 ~Ts~~gVFAgGD~v~Gp~tvV~AIa~Gr~AA~~I 496 (652)
T PRK12814 463 QTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAI 496 (652)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4399999989888768449999999999999999