HHsearch alignment for GI: 254781055 and conserved domain: TIGR01292

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=100.00  E-value=3.5e-42  Score=328.58  Aligned_cols=279  Identities=26%  Similarity=0.414  Sum_probs=216.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH
Q ss_conf             46899889867999999999889929999778786---146435682708899999999999841017736377544999
Q gi|254781055|r    5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG---GTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ   81 (461)
Q Consensus         5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G---GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~   81 (461)
T Consensus         1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~---------------~T~~vENYPGf~e~-----i~G~   60 (321)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLT---------------TTTEVENYPGFPEG-----ISGP   60 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC---------------CCCEEECCCCCCCC-----CCHH
T ss_conf             928998478678889999887467278983577774555333---------------22065136868887-----6628


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCC-CCC-CCC-----CCCCCCCCCCEEEEEEEECCCCCEEEEEEC-CC
Q ss_conf             999999999985546688643003320012-233-222-222-----222223221100111232277640233203-76
Q gi|254781055|r   82 SLITAQNKELSRLESFYHNRLESAGVEIFA-SKG-ILS-SPH-----SVYIANLNRTITSRYIVVSTGGSPNRMDFK-GS  152 (461)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~-g~a-~~~-~~~-----~v~V~~~~~~i~a~~iiIATGs~p~~p~i~-g~  152 (461)
T Consensus        61 ~L~~~M~~Qa~~-----------fG~~~~~G~~v~~v~~~~~~yE~~~F~~~~~-~~y~a~avIiAtGa~~r~lg~~kGE  128 (321)
T TIGR01292        61 ELMEKMKEQAKK-----------FGAEIIYGEEVIRVDKSDRAYESDPFKVKTG-KEYTAKAVIIATGAEARKLGIPKGE  128 (321)
T ss_pred             HHHHHHHHHHHH-----------CCCCEEECCEEEEEECCCCCCCCCEEEEEEC-CEEEEEEEEEECCCHHHHCCCCCCH
T ss_conf             899999999987-----------0673662670568633788436610389717-5688658999138715423788664


Q ss_pred             CCC--------CCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             221--------12378--51123333443212345453011244210122100000111122222232122222222222
Q gi|254781055|r  153 DLC--------ITSDE--IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISR  222 (461)
Q Consensus       153 ~~~--------~ts~~--~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~  222 (461)
T Consensus       129 ~ef~GrGVSyCA~CDGA~~ffk~---K~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRRd~f--RA----~k~~~~r~~~~  199 (321)
T TIGR01292       129 DEFLGRGVSYCATCDGASPFFKN---KEVAVVGGGDSALEEALYLTRIAKKVTLVHRRDKF--RA----EKILLDRLKKN  199 (321)
T ss_pred             HHHCCCCEEEEEHHCCCCHHHCC---CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCC--CC----CHHHHHHHHHC
T ss_conf             55326866672231054012059---88999879824888889998538767999779863--63----28999899837


Q ss_pred             ---CCCCCCCCEEEECCCCCC-CCE-EEEEC---C--CCCCCCCCEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCC-
Q ss_conf             ---332332200011024457-610-24312---7--532222100001522200126841123-21123543344574-
Q gi|254781055|r  223 ---GMQVFHNDTIESVVSESG-QLK-SILKS---G--KIVKTDQVILAVGRTPRTTGIGLEKVG-VKMDENGFIITDCY-  290 (461)
Q Consensus       223 ---Gv~i~~~~~v~~i~~~~~-~~~-~~~~~---g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~g-i~~~~~G~i~vd~~-  290 (461)
T Consensus       200 ~eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG~~P~t~~--~~~~G~~~~D~~GyI~t~~~~  277 (321)
T TIGR01292       200 PEGKIEFLWNSTVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGLGLLELDEGGYIVTDEGL  277 (321)
T ss_pred             CCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEECCCCCHHH--HHCCCCEEECCCCCEEECCCC
T ss_conf             898789964868999961783155335899623884889984447898412032057--650783467699868861754


Q ss_pred             ---CCCCEEEEEEECCCCC--CCCCCCHHHCCCCCCHHHHC
Q ss_conf             ---3000035587125432--64310000001111012205
Q gi|254781055|r  291 ---SRTNVQSIFSLGDISG--HIQLTPVAIHAAACFVETVF  326 (461)
Q Consensus       291 ---~~Ts~~~IyA~GDv~g--~~~l~~~A~~~g~~aa~~i~  326 (461)
T Consensus       278 Gn~~~Tsv~GvFAAGDv~~kW~~rQ~vTAag~G~~AA~~a~  318 (321)
T TIGR01292       278 GNTMRTSVPGVFAAGDVRDKWGFRQAVTAAGDGCIAALSAE  318 (321)
T ss_pred             CCEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHH
T ss_conf             86123066868973044068861376787000689999998