HHsearch alignment for GI: 254781055 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.95 E-value=1.3e-27 Score=221.72 Aligned_cols=279 Identities=22% Similarity=0.348 Sum_probs=177.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 46899889867999999999889929999778-78614643568270889999999999984101773637754499999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
T Consensus 152 kkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GG------------LL-------------~YGIP--nmKLdK~e~ 204 (517)
T TIGR01317 152 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGG------------LL-------------RYGIP--NMKLDKEEI 204 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC------------CC-------------CCCCC--CCCCCHHHH
T ss_conf 6689975675799999998535883899743678886------------30-------------24888--743373889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCC--C------CCCCCCCCCCCCCCCCE--EEEEEEECCCCC-EEEEEECCC
Q ss_conf 999999998554668864300332001223--3------22222222222322110--011123227764-023320376
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASK--G------ILSSPHSVYIANLNRTI--TSRYIVVSTGGS-PNRMDFKGS 152 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~--a------~~~~~~~v~V~~~~~~i--~a~~iiIATGs~-p~~p~i~g~ 152 (461)
T Consensus 205 v~RR------i-----~~l~aEG~~FvtnteiGdWdenskitnlsk~di~~--~~L~~~fDAVVLa~Ga~~pRDLpI~GR 271 (517)
T TIGR01317 205 VDRR------I-----DLLEAEGVDFVTNTEIGDWDENSKITNLSKKDISA--DELKEDFDAVVLATGATKPRDLPIPGR 271 (517)
T ss_pred HHHH------H-----HHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCH--HHHHHHCCEEEEECCCCCCCCCCCCCC
T ss_conf 9999------9-----99874784201783004653444200022342687--998714693898337886010355776
Q ss_pred CC--C------CCC-------CCCCCCC------CCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCCCC-----
Q ss_conf 22--1------123-------7851123------333443212345453011244210122-1000001111222-----
Q gi|254781055|r 153 DL--C------ITS-------DEIFSLK------SLPQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSILS----- 205 (461)
Q Consensus 153 ~~--~------~ts-------~~~~~l~------~~P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~l~----- 205 (461)
T Consensus 272 EL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~mP~PP~~Ra~~ 351 (517)
T TIGR01317 272 ELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEERAKD 351 (517)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 64660378655467548560885366678873542286789975787562245632355435523025688877677278
Q ss_pred ----CCCCCCC-CCCCCCCCC-CC--CCCCCCCEEEECCCCC-CCCE------EEE--------------ECCCCCCCCC
Q ss_conf ----2223212-222222222-23--3233220001102445-7610------243--------------1275322221
Q gi|254781055|r 206 ----KFDSDIR-QGLTDVMIS-RG--MQVFHNDTIESVVSES-GQLK------SIL--------------KSGKIVKTDQ 256 (461)
Q Consensus 206 ----~~d~~~~-~~~~~~l~~-~G--v~i~~~~~v~~i~~~~-~~~~------~~~--------------~~g~~~~~D~ 256 (461)
T Consensus 352 npWP~wP~v~r~~y~hEE~~a~~GrDpRey-~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~~~~e~pGsE~~~~AdL 430 (517)
T TIGR01317 352 NPWPEWPKVYRVDYAHEEVKAKYGRDPREY-SIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKYEFVEVPGSEEVFEADL 430 (517)
T ss_pred CCCCCCCCEEEECHHHHHHHHCCCCCCHHH-HCCCEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHE
T ss_conf 648657511330266898985179560123-1001335676884487888899999877898288886079752011012
Q ss_pred CEECCCCEEEECCC-CCCCCCCCCCCCCCC-CCCCCCC---CCEEE--EEEECCCCCCCCCCCHHHCCCCCCHHHH
Q ss_conf 00001522200126-841123211235433-4457430---00035--5871254326431000000111101220
Q gi|254781055|r 257 VILAVGRTPRTTGI-GLEKVGVKMDENGFI-ITDCYSR---TNVQS--IFSLGDISGHIQLTPVAIHAAACFVETV 325 (461)
Q Consensus 257 vl~a~Gr~Pn~~~l-~L~~~gi~~~~~G~i-~vd~~~~---Ts~~~--IyA~GDv~g~~~l~~~A~~~g~~aa~~i 325 (461)
T Consensus 431 VLLAmGFv-GPE~~GlL~~~gV~k~~RG~i~A~~~~~~GylTSipGGkVFAAGD~RRGQSLiVWAI~EGR~aA~aV 505 (517)
T TIGR01317 431 VLLAMGFV-GPEQAGLLDDFGVDKDERGNIKAGYDDYEGYLTSIPGGKVFAAGDCRRGQSLIVWAINEGRKAARAV 505 (517)
T ss_pred EEEECCCC-CCCCCCCHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 33202675-7642003144444437787466323677765887189726876248988037788888878999986