HHsearch alignment for GI: 254781055 and conserved domain: TIGR01318

>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.93  E-value=1.2e-25  Score=207.21  Aligned_cols=273  Identities=22%  Similarity=0.369  Sum_probs=190.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH-H
Q ss_conf             546899889867999999999889929999778-78614643568270889999999999984101773637754499-9
Q gi|254781055|r    4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW-Q   81 (461)
Q Consensus         4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~-~   81 (461)
T Consensus       143 g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGG------------LL-------------tFGI----PsFKLdK  193 (480)
T TIGR01318       143 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG------------LL-------------TFGI----PSFKLDK  193 (480)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCC------------CC-------------CCCC----CCHHHHH
T ss_conf             82789977886025799987517855999747703076------------01-------------3688----8511027


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEE-EEEECCCCC--CC--
Q ss_conf             9999999999855466886430033200122332222222222232211001112322776402-332037622--11--
Q gi|254781055|r   82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPN-RMDFKGSDL--CI--  156 (461)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~-~p~i~g~~~--~~--  156 (461)
T Consensus       194 ~V~~~Rr~i-----------f~~MGi~F~Ln~--EvG-rD~~l~~L--Le~YDAVFlGvGTY~~~~ggLP~eDa~GV~~A  257 (480)
T TIGR01318       194 AVLSRRREI-----------FTAMGIEFKLNT--EVG-RDISLDDL--LEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKA  257 (480)
T ss_pred             HHHHHHHHH-----------HHHCCCEEECCC--EEE-CCCCHHHH--HHHCCEEEEECCCCCCCCCCCCCCCCCCHHHH
T ss_conf             899999999-----------975892786581--650-32555444--31148489611433431287788774216664


Q ss_pred             ------CCCCCCCCCC-----------CC------CCCCCCCCCCCCCHHHHHHHCCC-CCCCEECCCCCC-CCCCCCCC
Q ss_conf             ------2378511233-----------33------44321234545301124421012-210000011112-22222321
Q gi|254781055|r  157 ------TSDEIFSLKS-----------LP------QSTLIIGGGYIAVEFAGILNSLG-SKTTLVTRGNSI-LSKFDSDI  211 (461)
Q Consensus       157 ------ts~~~~~l~~-----------~P------~~i~IiGgG~ig~E~A~~~~~lG-~~Vtli~~~~~~-l~~~d~~~  211 (461)
T Consensus       258 LPFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~YRRDE~nMPGSrrEV  337 (480)
T TIGR01318       258 LPFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCAYRRDEANMPGSRREV  337 (480)
T ss_pred             HHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHH
T ss_conf             24776615212378887774467776677423477668985888752578899998177613126653677878775552


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCC-CCCCE---EE-EE-----------------CCCCCCCCCCEECCCCEEEECC
Q ss_conf             222222222223323322000110244-57610---24-31-----------------2753222210000152220012
Q gi|254781055|r  212 RQGLTDVMISRGMQVFHNDTIESVVSE-SGQLK---SI-LK-----------------SGKIVKTDQVILAVGRTPRTTG  269 (461)
Q Consensus       212 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~---~~-~~-----------------~g~~~~~D~vl~a~Gr~Pn~~~  269 (461)
T Consensus       338 ~----N-AREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~ADvvI~AFGF~P~~~p  412 (480)
T TIGR01318       338 A----N-AREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPADVVIMAFGFSPHAMP  412 (480)
T ss_pred             C----C-CHHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCC
T ss_conf             6----6-1111711321003158887788852335652356678677768777104786515146558971067898864


Q ss_pred             CCCCCCCCCCCCCCCCCCC-------CCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCC
Q ss_conf             6841123211235433445-------743000035587125432643100000011110122058
Q gi|254781055|r  270 IGLEKVGVKMDENGFIITD-------CYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFK  327 (461)
Q Consensus       270 l~L~~~gi~~~~~G~i~vd-------~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~  327 (461)
T Consensus       413 W-L~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~~  476 (480)
T TIGR01318       413 W-LAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGILD  476 (480)
T ss_pred             H-HHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             4-451775563463277513455677653356884751677014672200066766899999999