HHsearch alignment for GI: 254781055 and conserved domain: TIGR01318
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.93 E-value=1.2e-25 Score=207.21 Aligned_cols=273 Identities=22% Similarity=0.369 Sum_probs=190.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH-H
Q ss_conf 546899889867999999999889929999778-78614643568270889999999999984101773637754499-9
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW-Q 81 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~-~ 81 (461)
T Consensus 143 g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGG------------LL-------------tFGI----PsFKLdK 193 (480)
T TIGR01318 143 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG------------LL-------------TFGI----PSFKLDK 193 (480)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCC------------CC-------------CCCC----CCHHHHH
T ss_conf 82789977886025799987517855999747703076------------01-------------3688----8511027
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEE-EEEECCCCC--CC--
Q ss_conf 9999999999855466886430033200122332222222222232211001112322776402-332037622--11--
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPN-RMDFKGSDL--CI-- 156 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~-~p~i~g~~~--~~-- 156 (461)
T Consensus 194 ~V~~~Rr~i-----------f~~MGi~F~Ln~--EvG-rD~~l~~L--Le~YDAVFlGvGTY~~~~ggLP~eDa~GV~~A 257 (480)
T TIGR01318 194 AVLSRRREI-----------FTAMGIEFKLNT--EVG-RDISLDDL--LEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKA 257 (480)
T ss_pred HHHHHHHHH-----------HHHCCCEEECCC--EEE-CCCCHHHH--HHHCCEEEEECCCCCCCCCCCCCCCCCCHHHH
T ss_conf 899999999-----------975892786581--650-32555444--31148489611433431287788774216664
Q ss_pred ------CCCCCCCCCC-----------CC------CCCCCCCCCCCCCHHHHHHHCCC-CCCCEECCCCCC-CCCCCCCC
Q ss_conf ------2378511233-----------33------44321234545301124421012-210000011112-22222321
Q gi|254781055|r 157 ------TSDEIFSLKS-----------LP------QSTLIIGGGYIAVEFAGILNSLG-SKTTLVTRGNSI-LSKFDSDI 211 (461)
Q Consensus 157 ------ts~~~~~l~~-----------~P------~~i~IiGgG~ig~E~A~~~~~lG-~~Vtli~~~~~~-l~~~d~~~ 211 (461)
T Consensus 258 LPFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~YRRDE~nMPGSrrEV 337 (480)
T TIGR01318 258 LPFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCAYRRDEANMPGSRREV 337 (480)
T ss_pred HHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 24776615212378887774467776677423477668985888752578899998177613126653677878775552
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCC-CCCCE---EE-EE-----------------CCCCCCCCCCEECCCCEEEECC
Q ss_conf 222222222223323322000110244-57610---24-31-----------------2753222210000152220012
Q gi|254781055|r 212 RQGLTDVMISRGMQVFHNDTIESVVSE-SGQLK---SI-LK-----------------SGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 212 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~---~~-~~-----------------~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
T Consensus 338 ~----N-AREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~ADvvI~AFGF~P~~~p 412 (480)
T TIGR01318 338 A----N-AREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPADVVIMAFGFSPHAMP 412 (480)
T ss_pred C----C-CHHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCC
T ss_conf 6----6-1111711321003158887788852335652356678677768777104786515146558971067898864
Q ss_pred CCCCCCCCCCCCCCCCCCC-------CCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCC
Q ss_conf 6841123211235433445-------743000035587125432643100000011110122058
Q gi|254781055|r 270 IGLEKVGVKMDENGFIITD-------CYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 270 l~L~~~gi~~~~~G~i~vd-------~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 327 (461)
T Consensus 413 W-L~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~~ 476 (480)
T TIGR01318 413 W-LAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGILD 476 (480)
T ss_pred H-HHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 4-451775563463277513455677653356884751677014672200066766899999999