HHsearch alignment for GI: 254781055 and conserved domain: TIGR01350

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.84  E-value=7.1e-05  Score=54.68  Aligned_cols=135  Identities=21%  Similarity=0.319  Sum_probs=80.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf             8998898679999999998899299997787-861464356827088999999999998410177363775449999999
Q gi|254781055|r    7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT   85 (461)
Q Consensus         7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~   85 (461)
T Consensus       181 lvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI----------------------------------L--p~~-------  217 (481)
T TIGR01350       181 LVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI----------------------------------L--PGE-------  217 (481)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC----------------------------------C--CCC-------
T ss_conf             699878667788999998539808999457500----------------------------------3--543-------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCC-EEECCCCCC-----CCCCCCCC--CCCCC----CCEEEEEEEECCCCCEEEE--EECC
Q ss_conf             999999855466886430033-200122332-----22222222--22322----1100111232277640233--2037
Q gi|254781055|r   86 AQNKELSRLESFYHNRLESAG-VEIFASKGI-----LSSPHSVY--IANLN----RTITSRYIVVSTGGSPNRM--DFKG  151 (461)
Q Consensus        86 ~~~~~~~~l~~~~~~~l~~~g-v~vi~g~a~-----~~~~~~v~--V~~~~----~~i~a~~iiIATGs~p~~p--~i~g  151 (461)
T Consensus       218 --D~ev---Sk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~  292 (481)
T TIGR01350       218 --DAEV---SKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEK  292 (481)
T ss_pred             --CHHH---HHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEE
T ss_conf             --1689---99999999744984985485442335775287899999987998058898739999842434767646021


Q ss_pred             CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             622112378511----23333443212345453011244210
Q gi|254781055|r  152 SDLCITSDEIFS----LKSLPQSTLIIGGGYIAVEFAGILNS  189 (461)
Q Consensus       152 ~~~~~ts~~~~~----l~~~P~~i~IiGgG~ig~E~A~~~~~  189 (461)
T Consensus       293 ~Gv~~~~rG~i~vd~~~~Tnv~~IYAIGDv~gg~mLAH~A~~  334 (481)
T TIGR01350       293 LGVKLDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASH  334 (481)
T ss_pred             EEEEECCCCEEEECCEEEECCCCEEEEEECCCCCHHHHHHHH
T ss_conf             211887898188798325168966688734787026899998