HHsearch alignment for GI: 254781055 and conserved domain: TIGR01372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.69 E-value=1.9e-16 Score=139.73 Aligned_cols=279 Identities=18% Similarity=0.233 Sum_probs=177.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 546899889867999999999889929999778-7861464356827088999999999998410177363775449999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
T Consensus 176 HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~---------------------~-------~g~~IDG~P 227 (1026)
T TIGR01372 176 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLS---------------------E-------AGETIDGKP 227 (1026)
T ss_pred ECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---------------------C-------CCCCCCCCC
T ss_conf 204788788967999999996479889997067657775567---------------------7-------876017801
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-------C------CCCCCCCCCCC---CC--CEEEEEEEECCCCCE
Q ss_conf 999999999855466886430033200122332-------2------22222222232---21--100111232277640
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGI-------L------SSPHSVYIANL---NR--TITSRYIVVSTGGSP 144 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~-------~------~~~~~v~V~~~---~~--~i~a~~iiIATGs~p 144 (461)
T Consensus 228 A~~W~~~t~aeL~a~~-------~v~~L~RTT~~G~YD~N~~g~~ER~~DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~E 300 (1026)
T TIGR01372 228 AADWAAATVAELEALP-------EVTLLPRTTAFGYYDHNTVGALERVTDHLDAPAKGVPRERLWRVRAKRVVLATGALE 300 (1026)
T ss_pred HHHHHHHHHHHHHCCC-------CEEECCCCCEEEEECCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCEEEECCCCCC
T ss_conf 8999999999974189-------816743540554514774787620113667788748533057772534566057644
Q ss_pred EEEEECCCCCC-CCCCCCC--CCC----CCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 23320376221-1237851--123----3334432123454530112442101221-00000111122222232122222
Q gi|254781055|r 145 NRMDFKGSDLC-ITSDEIF--SLK----SLPQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSILSKFDSDIRQGLT 216 (461)
Q Consensus 145 ~~p~i~g~~~~-~ts~~~~--~l~----~~P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~l~~~d~~~~~~~~ 216 (461)
T Consensus 301 RPlVF~nND~PGvMlA~A~~~YlnRygV~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p~--------~~ 372 (1026)
T TIGR01372 301 RPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSPE--------LV 372 (1026)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCHH--------HH
T ss_conf 7786883195323336799998887500548705898217358999999996489506999617887524--------79
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCC---CEEEE---------ECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCC--
Q ss_conf 2222223323322000110244576---10243---------127532222100001522200126841123211235--
Q gi|254781055|r 217 DVMISRGMQVFHNDTIESVVSESGQ---LKSIL---------KSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN-- 282 (461)
Q Consensus 217 ~~l~~~Gv~i~~~~~v~~i~~~~~~---~~~~~---------~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~-- 282 (461)
T Consensus 373 ~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK~~W~~~~~ 452 (1026)
T TIGR01372 373 AEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGKLAWDEARA 452 (1026)
T ss_pred HHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCCCHHHH
T ss_conf 99987598598645022125772101046888624400113578524785389872776621222000588343013343
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCH---HHCCCCCCHHHH
Q ss_conf 4334457430000355871254326431000---000111101220
Q gi|254781055|r 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPV---AIHAAACFVETV 325 (461)
Q Consensus 283 G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~---A~~~g~~aa~~i 325 (461)
T Consensus 453 AFlP~~PtqkW~~~~~~~AGA~~G~~gl~a~l~dG~~~G~~aA~~~ 498 (1026)
T TIGR01372 453 AFLPGTPTQKWAVQGCILAGAVNGLFGLAAALADGAAAGAAAARAA 498 (1026)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1586675544366772785300010107999999999999999861