HHsearch alignment for GI: 254781055 and conserved domain: TIGR01816
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=97.77 E-value=3e-05 Score=57.43 Aligned_cols=283 Identities=17% Similarity=0.300 Sum_probs=132.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC------C---CCCEEEEEECCCC-HHHH-HHH---------------H
Q ss_conf 54689988986799999999988992999977------8---7861464356827-0889-999---------------9
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE------Y---RVGGTCVIRGCIP-KKLM-FYA---------------S 57 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~------~---~~GGtC~~~GCiP-sK~l-~~~---------------a 57 (461)
T Consensus 2 ~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDAi 81 (615)
T TIGR01816 2 KFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDAI 81 (615)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHH
T ss_conf 42279886875689999986327923889831368864112234457888517787988636403100056521246899
Q ss_pred -----HHHHHHHHHHCCCEECC-------------CCCCCHHHH-HHHHHH-HHHH-----HHHHHHHHHCCCCEEECCC
Q ss_conf -----99999984101773637-------------754499999-999999-9985-----5466886430033200122
Q gi|254781055|r 58 -----QYSEYFEDSQGFGWSVD-------------HKSFDWQSL-ITAQNK-ELSR-----LESFYHNRLESAGVEIFAS 112 (461)
Q Consensus 58 -----~~~~~~~~~~~~g~~~~-------------~~~~d~~~~-~~~~~~-~~~~-----l~~~~~~~l~~~gv~vi~g 112 (461)
T Consensus 82 E~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nv-k~~t~FF~E 160 (615)
T TIGR01816 82 EYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNV-KADTSFFNE 160 (615)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCCEEEH
T ss_conf 8862313577876652777978888983320778697521156332324200014202579999876664-318744750
Q ss_pred C-CC--CCCCCCC-----------CCCCCC-CCEEEEEEEECCCCCEEEEEECCCCCCCCCCCC-CCCC-CCCCCCCCCC
Q ss_conf 3-32--2222222-----------222322-110011123227764023320376221123785-1123-3334432123
Q gi|254781055|r 113 K-GI--LSSPHSV-----------YIANLN-RTITSRYIVVSTGGSPNRMDFKGSDLCITSDEI-FSLK-SLPQSTLIIG 175 (461)
Q Consensus 113 ~-a~--~~~~~~v-----------~V~~~~-~~i~a~~iiIATGs~p~~p~i~g~~~~~ts~~~-~~l~-~~P~~i~IiG 175 (461)
T Consensus 161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlP------- 233 (615)
T TIGR01816 161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLP------- 233 (615)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_conf 2211046525789588799889876058888899541078973786405676644565521368888726887-------
Q ss_pred CCCCCCHHHHH----HHCCCCCC---------CEEC-CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCEEEECC
Q ss_conf 45453011244----21012210---------0000-111122222232122222-----22222233233220001102
Q gi|254781055|r 176 GGYIAVEFAGI----LNSLGSKT---------TLVT-RGNSILSKFDSDIRQGLT-----DVMISRGMQVFHNDTIESVV 236 (461)
Q Consensus 176 gG~ig~E~A~~----~~~lG~~V---------tli~-~~~~~l~~~d~~~~~~~~-----~~l~~~Gv~i~~~~~v~~i~ 236 (461)
T Consensus 234 --lqDmEF~QFHPTGiagaG~LiTEG~RGEGG~L~Na~GERFMERYAP~~KDLAsRDvVaRsM~---~Ei~EGRGvG--- 305 (615)
T TIGR01816 234 --LQDMEFWQFHPTGIAGAGVLITEGVRGEGGILLNANGERFMERYAPTAKDLASRDVVARSMT---LEIREGRGVG--- 305 (615)
T ss_pred --CCCCCCCCCCHHHHHCCCEEEEECCCCCCCEEECCCCCCCHHCCCCCCCCCCCCCHHHHHHH---HHHHCCCCCC---
T ss_conf --11322312370334108726750121477552468875102001675100368636466258---8764178969---
Q ss_pred CCCCCCEEEEEC-C-CC---------------CCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCC-CCC-CCCCEEE
Q ss_conf 445761024312-7-53---------------222210000152220012684112321123543344-574-3000035
Q gi|254781055|r 237 SESGQLKSILKS-G-KI---------------VKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIIT-DCY-SRTNVQS 297 (461)
Q Consensus 237 ~~~~~~~~~~~~-g-~~---------------~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~v-d~~-~~Ts~~~ 297 (461)
T Consensus 306 ~~KDhV~l~l~HLg~E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~---HY~MGGIPTn~~Gqvl~~~~~g~~~~V~G 382 (615)
T TIGR01816 306 PNKDHVYLKLDHLGEEVLEEKLPGITELARTFAGVDPVKDPIPVLPTV---HYMMGGIPTNYHGQVLRKDGDGNDSIVEG 382 (615)
T ss_pred CCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEEEECCCCCCCCCCH
T ss_conf 675889886134885788652877548999863888510786898863---41576732156434886424789861023
Q ss_pred EEEECCCC
Q ss_conf 58712543
Q gi|254781055|r 298 IFSLGDIS 305 (461)
Q Consensus 298 IyA~GDv~ 305 (461)
T Consensus 383 LyA~GE~A 390 (615)
T TIGR01816 383 LYAAGEAA 390 (615)
T ss_pred HHHHHHHH
T ss_conf 76642452