HHsearch alignment for GI: 254781055 and conserved domain: TIGR01816

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=97.77  E-value=3e-05  Score=57.43  Aligned_cols=283  Identities=17%  Similarity=0.300  Sum_probs=132.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC------C---CCCEEEEEECCCC-HHHH-HHH---------------H
Q ss_conf             54689988986799999999988992999977------8---7861464356827-0889-999---------------9
Q gi|254781055|r    4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE------Y---RVGGTCVIRGCIP-KKLM-FYA---------------S   57 (461)
Q Consensus         4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~------~---~~GGtC~~~GCiP-sK~l-~~~---------------a   57 (461)
T Consensus         2 ~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDAi   81 (615)
T TIGR01816         2 KFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDAI   81 (615)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHH
T ss_conf             42279886875689999986327923889831368864112234457888517787988636403100056521246899


Q ss_pred             -----HHHHHHHHHHCCCEECC-------------CCCCCHHHH-HHHHHH-HHHH-----HHHHHHHHHCCCCEEECCC
Q ss_conf             -----99999984101773637-------------754499999-999999-9985-----5466886430033200122
Q gi|254781055|r   58 -----QYSEYFEDSQGFGWSVD-------------HKSFDWQSL-ITAQNK-ELSR-----LESFYHNRLESAGVEIFAS  112 (461)
Q Consensus        58 -----~~~~~~~~~~~~g~~~~-------------~~~~d~~~~-~~~~~~-~~~~-----l~~~~~~~l~~~gv~vi~g  112 (461)
T Consensus        82 E~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nv-k~~t~FF~E  160 (615)
T TIGR01816        82 EYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNV-KADTSFFNE  160 (615)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCCEEEH
T ss_conf             8862313577876652777978888983320778697521156332324200014202579999876664-318744750


Q ss_pred             C-CC--CCCCCCC-----------CCCCCC-CCEEEEEEEECCCCCEEEEEECCCCCCCCCCCC-CCCC-CCCCCCCCCC
Q ss_conf             3-32--2222222-----------222322-110011123227764023320376221123785-1123-3334432123
Q gi|254781055|r  113 K-GI--LSSPHSV-----------YIANLN-RTITSRYIVVSTGGSPNRMDFKGSDLCITSDEI-FSLK-SLPQSTLIIG  175 (461)
Q Consensus       113 ~-a~--~~~~~~v-----------~V~~~~-~~i~a~~iiIATGs~p~~p~i~g~~~~~ts~~~-~~l~-~~P~~i~IiG  175 (461)
T Consensus       161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlP-------  233 (615)
T TIGR01816       161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLP-------  233 (615)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_conf             2211046525789588799889876058888899541078973786405676644565521368888726887-------


Q ss_pred             CCCCCCHHHHH----HHCCCCCC---------CEEC-CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCEEEECC
Q ss_conf             45453011244----21012210---------0000-111122222232122222-----22222233233220001102
Q gi|254781055|r  176 GGYIAVEFAGI----LNSLGSKT---------TLVT-RGNSILSKFDSDIRQGLT-----DVMISRGMQVFHNDTIESVV  236 (461)
Q Consensus       176 gG~ig~E~A~~----~~~lG~~V---------tli~-~~~~~l~~~d~~~~~~~~-----~~l~~~Gv~i~~~~~v~~i~  236 (461)
T Consensus       234 --lqDmEF~QFHPTGiagaG~LiTEG~RGEGG~L~Na~GERFMERYAP~~KDLAsRDvVaRsM~---~Ei~EGRGvG---  305 (615)
T TIGR01816       234 --LQDMEFWQFHPTGIAGAGVLITEGVRGEGGILLNANGERFMERYAPTAKDLASRDVVARSMT---LEIREGRGVG---  305 (615)
T ss_pred             --CCCCCCCCCCHHHHHCCCEEEEECCCCCCCEEECCCCCCCHHCCCCCCCCCCCCCHHHHHHH---HHHHCCCCCC---
T ss_conf             --11322312370334108726750121477552468875102001675100368636466258---8764178969---


Q ss_pred             CCCCCCEEEEEC-C-CC---------------CCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCC-CCC-CCCCEEE
Q ss_conf             445761024312-7-53---------------222210000152220012684112321123543344-574-3000035
Q gi|254781055|r  237 SESGQLKSILKS-G-KI---------------VKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIIT-DCY-SRTNVQS  297 (461)
Q Consensus       237 ~~~~~~~~~~~~-g-~~---------------~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~v-d~~-~~Ts~~~  297 (461)
T Consensus       306 ~~KDhV~l~l~HLg~E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~---HY~MGGIPTn~~Gqvl~~~~~g~~~~V~G  382 (615)
T TIGR01816       306 PNKDHVYLKLDHLGEEVLEEKLPGITELARTFAGVDPVKDPIPVLPTV---HYMMGGIPTNYHGQVLRKDGDGNDSIVEG  382 (615)
T ss_pred             CCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEEEECCCCCCCCCCH
T ss_conf             675889886134885788652877548999863888510786898863---41576732156434886424789861023


Q ss_pred             EEEECCCC
Q ss_conf             58712543
Q gi|254781055|r  298 IFSLGDIS  305 (461)
Q Consensus       298 IyA~GDv~  305 (461)
T Consensus       383 LyA~GE~A  390 (615)
T TIGR01816       383 LYAAGEAA  390 (615)
T ss_pred             HHHHHHHH
T ss_conf             76642452