HHsearch alignment for GI: 254781055 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.8e-38 Score=301.33 Aligned_cols=279 Identities=21% Similarity=0.336 Sum_probs=203.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 65468998898679999999998899299997787861464356827088999999999998410177363775449999
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
T Consensus 211 ~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~-~~GGqv~~t~~I---------------eNyp--G~----~~i~G~e 268 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQVKDTVGI---------------ENLI--SV----PYTTGSQ 268 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCEECCCE---------------EECC--CC----CCCCHHH
T ss_conf 888889989678999999999977997699924-877531303460---------------0448--98----7775799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CCCC--CCCCCCC-CCCCCCEEEEEEEECCCCCEEEEEECCCCC----
Q ss_conf 9999999998554668864300332001223-3222--2222222-232211001112322776402332037622----
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASK-GILS--SPHSVYI-ANLNRTITSRYIVVSTGGSPNRMDFKGSDL---- 154 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~~~--~~~~v~V-~~~~~~i~a~~iiIATGs~p~~p~i~g~~~---- 154 (461)
T Consensus 269 L~~~~~~q-----------a~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~aktVIiATGa~~r~l~vpGE~e~~Gk 337 (515)
T TIGR03140 269 LAANLEEH-----------IKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGK 337 (515)
T ss_pred HHHHHHHH-----------HHHCCCEEEECCEEEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCCCHHHCCCC
T ss_conf 99999999-----------9974968991336999972798189998799899939799956987355899967870387
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf ----1123785112333344321234545301124421012210000011112222223212222222222-23323322
Q gi|254781055|r 155 ----CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS-RGMQVFHN 229 (461)
Q Consensus 155 ----~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~Gv~i~~~ 229 (461)
T Consensus 338 GVsYCa~CDG~~f---kgK~VaVvGGGnsA~eeAl~La~~a~~Vtli~r~~~~ra--~~----~l~~kl~~~~nI~i~~~ 408 (515)
T TIGR03140 338 GVAYCPHCDGPFF---KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--DK----VLQDKLKSLPNVDILTS 408 (515)
T ss_pred CCCEECCCCCHHC---CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CH----HHHHHHHHCCCEEEEEC
T ss_conf 4010010781011---897699989977999999999841771699736523343--38----89999983898689979
Q ss_pred CEEEECCCCCCCCE-EEEEC---C--CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 00011024457610-24312---7--532222100001522200126841123211235433445743000035587125
Q gi|254781055|r 230 DTIESVVSESGQLK-SILKS---G--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGD 303 (461)
Q Consensus 230 ~~v~~i~~~~~~~~-~~~~~---g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GD 303 (461)
T Consensus 409 ~~v~eI~Gdg~~v~~v~~~d~~tge~~~l~vdGvFV~iG~~Pnt~~l--~~-~v~l~~~G~I~vD~~~~TnvpGVFAAGD 485 (515)
T TIGR03140 409 AQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KD-AVELNRRGEIVIDERGRTSVPGIFAAGD 485 (515)
T ss_pred CEEEEEECCCCEEEEEEEEECCCCCEEEEECCEEEEECCCCCCHHHH--HC-HHCCCCCCEEECCCCCCCCCCCEEEEEE
T ss_conf 88899987898589999998899977999868999984997662565--15-1110799739829987079998798566
Q ss_pred CCCCC-CCCCHHHCCCCCCHHHHC
Q ss_conf 43264-310000001111012205
Q gi|254781055|r 304 ISGHI-QLTPVAIHAAACFVETVF 326 (461)
Q Consensus 304 v~g~~-~l~~~A~~~g~~aa~~i~ 326 (461)
T Consensus 486 vt~~~~kQi~~A~G~Ga~AAlsA~ 509 (515)
T TIGR03140 486 VTTVPYKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred CCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 738986678786664799999999