HHsearch alignment for GI: 254781055 and conserved domain: TIGR03140

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00  E-value=1.8e-38  Score=301.33  Aligned_cols=279  Identities=21%  Similarity=0.336  Sum_probs=203.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf             65468998898679999999998899299997787861464356827088999999999998410177363775449999
Q gi|254781055|r    3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS   82 (461)
Q Consensus         3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~   82 (461)
T Consensus       211 ~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~-~~GGqv~~t~~I---------------eNyp--G~----~~i~G~e  268 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQVKDTVGI---------------ENLI--SV----PYTTGSQ  268 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCEECCCE---------------EECC--CC----CCCCHHH
T ss_conf             888889989678999999999977997699924-877531303460---------------0448--98----7775799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CCCC--CCCCCCC-CCCCCCEEEEEEEECCCCCEEEEEECCCCC----
Q ss_conf             9999999998554668864300332001223-3222--2222222-232211001112322776402332037622----
Q gi|254781055|r   83 LITAQNKELSRLESFYHNRLESAGVEIFASK-GILS--SPHSVYI-ANLNRTITSRYIVVSTGGSPNRMDFKGSDL----  154 (461)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~~~--~~~~v~V-~~~~~~i~a~~iiIATGs~p~~p~i~g~~~----  154 (461)
T Consensus       269 L~~~~~~q-----------a~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~aktVIiATGa~~r~l~vpGE~e~~Gk  337 (515)
T TIGR03140       269 LAANLEEH-----------IKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGK  337 (515)
T ss_pred             HHHHHHHH-----------HHHCCCEEEECCEEEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCCCHHHCCCC
T ss_conf             99999999-----------9974968991336999972798189998799899939799956987355899967870387


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             ----1123785112333344321234545301124421012210000011112222223212222222222-23323322
Q gi|254781055|r  155 ----CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS-RGMQVFHN  229 (461)
Q Consensus       155 ----~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~Gv~i~~~  229 (461)
T Consensus       338 GVsYCa~CDG~~f---kgK~VaVvGGGnsA~eeAl~La~~a~~Vtli~r~~~~ra--~~----~l~~kl~~~~nI~i~~~  408 (515)
T TIGR03140       338 GVAYCPHCDGPFF---KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--DK----VLQDKLKSLPNVDILTS  408 (515)
T ss_pred             CCCEECCCCCHHC---CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CH----HHHHHHHHCCCEEEEEC
T ss_conf             4010010781011---897699989977999999999841771699736523343--38----89999983898689979


Q ss_pred             CEEEECCCCCCCCE-EEEEC---C--CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             00011024457610-24312---7--532222100001522200126841123211235433445743000035587125
Q gi|254781055|r  230 DTIESVVSESGQLK-SILKS---G--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGD  303 (461)
Q Consensus       230 ~~v~~i~~~~~~~~-~~~~~---g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GD  303 (461)
T Consensus       409 ~~v~eI~Gdg~~v~~v~~~d~~tge~~~l~vdGvFV~iG~~Pnt~~l--~~-~v~l~~~G~I~vD~~~~TnvpGVFAAGD  485 (515)
T TIGR03140       409 AQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KD-AVELNRRGEIVIDERGRTSVPGIFAAGD  485 (515)
T ss_pred             CEEEEEECCCCEEEEEEEEECCCCCEEEEECCEEEEECCCCCCHHHH--HC-HHCCCCCCEEECCCCCCCCCCCEEEEEE
T ss_conf             88899987898589999998899977999868999984997662565--15-1110799739829987079998798566


Q ss_pred             CCCCC-CCCCHHHCCCCCCHHHHC
Q ss_conf             43264-310000001111012205
Q gi|254781055|r  304 ISGHI-QLTPVAIHAAACFVETVF  326 (461)
Q Consensus       304 v~g~~-~l~~~A~~~g~~aa~~i~  326 (461)
T Consensus       486 vt~~~~kQi~~A~G~Ga~AAlsA~  509 (515)
T TIGR03140       486 VTTVPYKQIIIAMGEGAKAALSAF  509 (515)
T ss_pred             CCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf             738986678786664799999999