HHsearch alignment for GI: 254781055 and conserved domain: pfam03486

>pfam03486 HI0933_like HI0933-like protein.
Probab=91.70  E-value=0.06  Score=33.19  Aligned_cols=84  Identities=20%  Similarity=0.305  Sum_probs=62.7

Q ss_pred             HHHHHHCCCCCCCEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEEC
Q ss_conf             1244210122100000111122222--23212222222222233233220001102445761024312753222210000
Q gi|254781055|r  183 FAGILNSLGSKTTLVTRGNSILSKF--DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILA  260 (461)
Q Consensus       183 ~A~~~~~lG~~Vtli~~~~~~l~~~--d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a  260 (461)
T Consensus        81 ~~~ff~~~Gl~~~-~e~~GrvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~~~~~~~a~~vIlA  159 (405)
T pfam03486        81 FIAWFEELGVPLK-EEDHGRLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEELEADSLVLA  159 (405)
T ss_pred             HHHHHHHCCCEEE-ECCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEECCCEEEECEEEEE
T ss_conf             9999997799059-778997978989869999999999997797899588878999759945999948958972789990


Q ss_pred             CCCE--EEE
Q ss_conf             1522--200
Q gi|254781055|r  261 VGRT--PRT  267 (461)
Q Consensus       261 ~Gr~--Pn~  267 (461)
T Consensus       160 tGG~s~p~~  168 (405)
T pfam03486       160 TGGLSWPKT  168 (405)
T ss_pred             CCCCCCCCC
T ss_conf             488665655