HHsearch alignment for GI: 254781055 and conserved domain: pfam03486
>pfam03486 HI0933_like HI0933-like protein.
Probab=91.70 E-value=0.06 Score=33.19 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=62.7
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEEC
Q ss_conf 1244210122100000111122222--23212222222222233233220001102445761024312753222210000
Q gi|254781055|r 183 FAGILNSLGSKTTLVTRGNSILSKF--DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILA 260 (461)
Q Consensus 183 ~A~~~~~lG~~Vtli~~~~~~l~~~--d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a 260 (461)
T Consensus 81 ~~~ff~~~Gl~~~-~e~~GrvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~~~~~~~a~~vIlA 159 (405)
T pfam03486 81 FIAWFEELGVPLK-EEDHGRLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEELEADSLVLA 159 (405)
T ss_pred HHHHHHHCCCEEE-ECCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEECCCEEEECEEEEE
T ss_conf 9999997799059-778997978989869999999999997797899588878999759945999948958972789990
Q ss_pred CCCE--EEE
Q ss_conf 1522--200
Q gi|254781055|r 261 VGRT--PRT 267 (461)
Q Consensus 261 ~Gr~--Pn~ 267 (461)
T Consensus 160 tGG~s~p~~ 168 (405)
T pfam03486 160 TGGLSWPKT 168 (405)
T ss_pred CCCCCCCCC
T ss_conf 488665655