RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781055|ref|YP_003065468.1| glutathione reductase
[Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>gnl|CDD|180410 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 635 bits (1640), Expect = 0.0
Identities = 192/452 (42%), Positives = 280/452 (61%), Gaps = 7/452 (1%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60
M +YDL+VIG GS G+ SA AA G KVA+ E R+GGTCV GC+PKKLM+Y +Q +
Sbjct: 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIA 60
Query: 61 EYFED-SQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP 119
E F D + G+G+ V FDW LI ++ + RL Y N LE+ GV++
Sbjct: 61 EAFHDYAPGYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA 120
Query: 120 HSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYI 179
H+V + T+ +I+++TGG P+ D G++ ITSD F+L+ LP+ ++G GYI
Sbjct: 121 HTVEVNG--ERYTADHILIATGGRPSIPDIPGAEYGITSDGFFALEELPKRVAVVGAGYI 178
Query: 180 AVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239
AVEFAG+LN LGS+T L RG++ L FD DIR+ L + M +G+++ N ++V +
Sbjct: 179 AVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA 238
Query: 240 -GQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSI 298
G L L+ G+ + D +I A+GR P T G+GLE GVK++E G+II D Y TNV I
Sbjct: 239 DGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGI 298
Query: 299 FSLGDISGHIQLTPVAIHAAACFVETVFKDNP-TIPDYDLVPTAVFSKPEIASVGLTEEE 357
+++GD++G ++LTPVAI A E +F + P DY +PT VFS P I +VGLTEEE
Sbjct: 299 YAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEE 358
Query: 358 AVQKF--CRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQV 415
A +++ +++Y++ F PM L+ + +MK++V KV+G+H +G A E+IQ
Sbjct: 359 AREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQG 418
Query: 416 LGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447
V +K G K DFD +A+HPT++EE VTM
Sbjct: 419 FAVAIKMGATKADFDNTVAIHPTAAEEFVTMR 450
>gnl|CDD|162352 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria.
Length = 446
Score = 551 bits (1421), Expect = e-157
Identities = 213/446 (47%), Positives = 294/446 (65%), Gaps = 1/446 (0%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEY 62
++YDL VIGAGS GVR+ARLAA G KVAI EE RVGGTCVIRGC+PKKLM Y S +
Sbjct: 1 FDYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGE 60
Query: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV 122
FED+ G+GW+V FDW+ L+ ++ E++RL Y L +AGVE+ + L P++V
Sbjct: 61 FEDAAGYGWTVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTV 120
Query: 123 YIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAVE 182
+ T T++ I+++ GG P + + G +L ITS+E F L +LP+S LI+GGGYIAVE
Sbjct: 121 EVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAFHLPTLPKSILILGGGYIAVE 180
Query: 183 FAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQL 242
FAGI LG + TL+ RG IL FD D+R L M RG+++ ++ S+ L
Sbjct: 181 FAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGL 240
Query: 243 KSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLG 302
K L G+ + D V+ A GR+P T G+GLE GV++++ G I D YSRT++ SI+++G
Sbjct: 241 KVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG 300
Query: 303 DISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKF 362
D++ I LTPVAI A CF T F +NPT D+DL+ TAVFS+P + +VGLTEEEA +KF
Sbjct: 301 DVTDRINLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKF 360
Query: 363 C-RLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLK 421
+ +Y+ F PMK S R E T+MK++V + KVLG H++G +A+EIIQ + + LK
Sbjct: 361 TGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALK 420
Query: 422 AGCVKKDFDRCMAVHPTSSEELVTMY 447
G K DFD + +HP+S+EE VTM
Sbjct: 421 MGATKADFDSTVGIHPSSAEEFVTMR 446
>gnl|CDD|178161 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 422 bits (1086), Expect = e-118
Identities = 199/461 (43%), Positives = 280/461 (60%), Gaps = 16/461 (3%)
Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE----------EYRVGGTCVIRGCIPKK 51
Y++DL IGAGS GVR++R A+ G A+CE VGGTCV+RGC+PKK
Sbjct: 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKK 136
Query: 52 LMFYASQYSEYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIF 110
L+ YAS+YS FE+S+GFGW + + DW +LI +N EL RL Y N L++AGV +
Sbjct: 137 LLVYASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLI 196
Query: 111 ASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQS 170
+G + PH+V + + T+R I+++ GG P D G + I SD L S P+
Sbjct: 197 EGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALDLPSKPEK 254
Query: 171 TLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHND 230
I+GGGYIA+EFAGI N L S + R +L FD ++R + + M RG++ FH +
Sbjct: 255 IAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIE-FHTE 313
Query: 231 TIESVVSESGQLKSILKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITD 288
+ +S LK+ K + V+ A GR P T +GLE+VGVKMD+NG I D
Sbjct: 314 ESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD 373
Query: 289 CYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEI 348
YSRT+V SI+++GD++ I LTPVA+ +T+F + PT PDY VP+AVFS+P I
Sbjct: 374 EYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPI 433
Query: 349 ASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHE 408
VGLTEE+A++++ ++++ F P+K LS + MK+IV A +KVLGVH+ G +
Sbjct: 434 GQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGED 493
Query: 409 ASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449
A EIIQ V +KAG K DFD + +HPT++EE VTM P
Sbjct: 494 APEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTP 534
>gnl|CDD|178123 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 403 bits (1038), Expect = e-113
Identities = 187/459 (40%), Positives = 275/459 (59%), Gaps = 15/459 (3%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE----------EYRVGGTCVIRGCIPKKL 52
Y++DL VIGAGS GVR+AR +A G KV ICE VGGTCVIRGC+PKK+
Sbjct: 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKI 83
Query: 53 MFYASQYSEYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFA 111
+ Y + + FED++ +GW ++ K F+W+ L+ + E+ RL Y L +AGV+++
Sbjct: 84 LVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYE 143
Query: 112 SKGILSSPHSVYIANLNRTI---TSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLP 168
+G + P+ V + L+ T T+++I+++TG R + G +L ITSDE SL+ LP
Sbjct: 144 GEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITSDEALSLEELP 203
Query: 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFH 228
+ +++GGGYIAVEFA I +G+ L R L FD ++R + + RG+ +
Sbjct: 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHP 263
Query: 229 NDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITD 288
+ + G +K I G+ D V+ A GR P T + LE VGV++D+ G + D
Sbjct: 264 RTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD 323
Query: 289 CYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEI 348
YSRTN+ SI+++GD++ I LTPVA+ CF +TVF PT PDY+ V AVF P +
Sbjct: 324 EYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPL 383
Query: 349 ASVGLTEEEAV-QKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGH 407
+ VGL+EEEAV Q + ++ + F PMK +S R E T+MK+IV A+ KVLG + G
Sbjct: 384 SVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGP 443
Query: 408 EASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446
+A EI+Q + V LK G K FD + +HP+++EE VTM
Sbjct: 444 DAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTM 482
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident
bacteria.
Length = 450
Score = 388 bits (998), Expect = e-108
Identities = 176/450 (39%), Positives = 262/450 (58%), Gaps = 9/450 (2%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63
YD +VIG GS G+ SAR AA+ G K + E ++GGTCV GC+PKK+M+YAS +E
Sbjct: 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERM 61
Query: 64 EDSQGFGWSV-DHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV 122
D+ +G+ +F+W L ++ + RL Y LE V++ + +V
Sbjct: 62 HDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTV 121
Query: 123 YIANLNRTITSRYIVVSTGGSPNRMD-FKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAV 181
+ R T+ +I+++TGG P+ + G++L SD F+L+ LP+ +I+G GYIAV
Sbjct: 122 EVNG--RDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEELPKRVVIVGAGYIAV 179
Query: 182 EFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV-VSESG 240
E AG+L+ LGS+T LV R +L FDS I + +T+ G+ V V + G
Sbjct: 180 ELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEG 239
Query: 241 QLKSILKSGK-IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299
+L + GK I D++I A+GR P T G+GLE VG+K++E G II D Y TNV I+
Sbjct: 240 KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIY 299
Query: 300 SLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-DYDLVPTAVFSKPEIASVGLTEEEA 358
+LGD+ G ++LTPVAI A E +F DY+ VPT VFS P I ++GLTE+EA
Sbjct: 300 ALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEA 359
Query: 359 VQKFCR--LEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVL 416
++K+ + +++Y + F PM ++ + MK++ KV+G+H +G E++Q
Sbjct: 360 IEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGF 419
Query: 417 GVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446
V +K G K DFD +A+HPTSSEELVTM
Sbjct: 420 AVAIKMGATKADFDNTVAIHPTSSEELVTM 449
>gnl|CDD|130490 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 353 bits (907), Expect = 5e-98
Identities = 183/479 (38%), Positives = 277/479 (57%), Gaps = 25/479 (5%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKK-VAICEEYRV---------GGTCVIRGCIPKKLMF 54
+DLVVIGAGS G+ + AA L KK VA+ + GGTCV GC+PKKLM
Sbjct: 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMV 63
Query: 55 YASQYSEYFEDSQGFGWSVDHKSF--DWQSLITAQNKELSRLESFYHNRL-ESAGVEIFA 111
+QY + +S GFGW D S +W++LI A+NK + + Y ++ G+ F
Sbjct: 64 TGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFL 123
Query: 112 SKGILSSPHSVYI-------ANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSL 164
G L + V + + + + + +I+++TG P + G + CI+S+E F L
Sbjct: 124 GWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIPGIEHCISSNEAFYL 183
Query: 165 KSLPQSTLIIGGGYIAVEFAGILNS---LGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS 221
P+ L +GGG+I+VEFAGI N+ G K TL R N IL FDS +R+ LT + +
Sbjct: 184 DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRA 243
Query: 222 RGMQVFHNDTIESV-VSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMD 280
G+ + N+ V ++ G +SGK + D V++A+GR PRT + L+KVGV++
Sbjct: 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT 303
Query: 281 ENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPT 340
+ G I D +SRTNV +I+++GD++ + LTPVAI+ A FV+TVF + P D+ V +
Sbjct: 304 KKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVAS 363
Query: 341 AVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLS-KRFEHTIMKIIVHADNHKV 399
AVFS P I + GL EE+A +KF ++ +Y++ F P+ +S +++ + KI+ + + V
Sbjct: 364 AVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTV 423
Query: 400 LGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIK 458
LGVH+LG + EIIQ +G+CLK DF + VHPTS+EEL +M P Y + G K
Sbjct: 424 LGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYQKGEK 482
>gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The motif
GGXCXXXGCXP near the N-terminus contains a redox-active
disulfide.
Length = 461
Score = 313 bits (803), Expect = 9e-86
Identities = 146/448 (32%), Positives = 242/448 (54%), Gaps = 13/448 (2%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63
YD+VVIG G G +A AAQLG KVA+ E+ +GGTC+ GCIP K + ++++ +
Sbjct: 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEI 60
Query: 64 EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVY 123
+ ++ +G V++ S DW+ + +NK + +L L+ V + + P +V
Sbjct: 61 KHAKDYGIEVENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVL 120
Query: 124 IANLN--RTITSRYIVVSTGGSPNRMDFK---GSDLCITSDEIFSLKSLPQSTLIIGGGY 178
+ N T+T++ I+++TG P + ++ ITS +LK +P+S +IIGGG
Sbjct: 121 VTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVITSTGALNLKEVPESLVIIGGGV 180
Query: 179 IAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238
I +EFA I SLGSK T++ + IL D+++ + + + +G+++ N + +V
Sbjct: 181 IGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKN 240
Query: 239 SGQLKSILKSGKIVKT---DQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295
Q+ G +T ++V++AVGR P T G+GLE +GV++DE G I+ D Y RTNV
Sbjct: 241 DDQVV-YENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNV 299
Query: 296 QSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTE 355
I+++GD+ G L VA H E + P DYD VP+ +++ PE+ASVGLTE
Sbjct: 300 PGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTE 359
Query: 356 EEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTI--MKIIVHADNHKVLGVHILGHEASEII 413
E+A + ++ KF + T +KII ++LG HI+G A+E+I
Sbjct: 360 EQAKEA--GYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELI 417
Query: 414 QVLGVCLKAGCVKKDFDRCMAVHPTSSE 441
+ ++ ++ + + HPT SE
Sbjct: 418 SEAVLAMELELTVEELAKTIHPHPTLSE 445
>gnl|CDD|162359 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 311 bits (797), Expect = 3e-85
Identities = 154/475 (32%), Positives = 239/475 (50%), Gaps = 37/475 (7%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKLM 53
Y+YDL+VIG GS G+ +A+ AA G KV + + + +GGTCV GCIPKKLM
Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60
Query: 54 FYASQYSEYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFAS 112
A+ + +DS+ +GW+V+ DW L A + L Y L V +
Sbjct: 61 HQAALLGQALKDSRNYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA 120
Query: 113 KGILSSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGS-DLCITSDEIFSLKSLP 168
H + N + ++ +++TG P G+ +LCITSD++FSL P
Sbjct: 121 YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKELCITSDDLFSLPYCP 180
Query: 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGL------TDVMIS 221
TL++G Y+A+E AG L +G T++ R SIL + FD D + V
Sbjct: 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR--SILLRGFDQDCANKVGEHMEEHGVKFK 238
Query: 222 RGMQVFHNDTIES--VVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKM 279
R + IE+ V+ + I + + D V+LA+GR T + LE VGVK+
Sbjct: 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEE-----EYDTVLLAIGRDACTRKLNLENVGVKI 293
Query: 280 DE-NGFIITDCYSRTNVQSIFSLGDI-SGHIQLTPVAIHAAACFVETVFKDNPTIPDYDL 337
++ G I D +TNV I+++GDI +LTPVAI A + +F + I DY+
Sbjct: 294 NKKTGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYEN 353
Query: 338 VPTAVFSKPEIASVGLTEEEAVQKFCR--LEIYKTKFFPMKCFLSKRFEHT--IMKIIVH 393
VPT VF+ E + GL+EE+AV+KF +E++ + F+P++ + R K + +
Sbjct: 354 VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCN 413
Query: 394 A-DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447
+N +V+G H++G A E+ Q L+ G KKD D + +HP +E T+
Sbjct: 414 RKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLS 468
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 306 bits (784), Expect = 1e-83
Identities = 158/514 (30%), Positives = 251/514 (48%), Gaps = 72/514 (14%)
Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSE 61
R YDL+VIG GS G+ +AR AA+ KVA+ E+ +GGTCV GC+PKK+MF A+ +
Sbjct: 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHD 105
Query: 62 YFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHS 121
E+S+ +G+ SF+ L+ ++K + RL Y L+ VE F KG L S +
Sbjct: 106 ILENSRHYGFDTQ-FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQ 164
Query: 122 VYIANLN---------------------------RTITSRYIVVSTGGSPNRMDFKGSDL 154
V I ++ + I + I+++ G P D KG +
Sbjct: 165 VLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPDVKGKEF 224
Query: 155 CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQG 214
I+SD+ F +K + I G GYIAVE ++N LG+++ + RGN +L KFD I
Sbjct: 225 TISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINE 283
Query: 215 LTDVMISRGMQVFHNDTIESV--VSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGL 272
L + M + + + +E + V E + K D VI VGR+P T + L
Sbjct: 284 LENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL 343
Query: 273 EKVGVKMDENGFIITDCYSRTNVQSIFSLGDISG-------------------------- 306
+ + +K G+I D RT+V+ I+++GD
Sbjct: 344 KALNIKT-PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKE 402
Query: 307 --------HIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEA 358
++QLTPVAI+A + +F +Y L+P+ +FS P I ++GL+E+EA
Sbjct: 403 NTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEA 462
Query: 359 VQKFCR--LEIYKTKF----FPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEI 412
+ + + ++IY+++F F + + E T +K++ + G+HI+G A EI
Sbjct: 463 IDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGLNADEI 522
Query: 413 IQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446
+Q V LK K DFD + +HPT++EE VTM
Sbjct: 523 LQGFAVALKMNATKADFDETIPIHPTAAEEFVTM 556
>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 291 bits (747), Expect = 3e-79
Identities = 142/460 (30%), Positives = 223/460 (48%), Gaps = 40/460 (8%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63
+YD++VIGAG +G +AR AA+LGKKVA+ E+ +GGTC+ GCIP K + A++
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEA 62
Query: 64 EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLES-AGVEIFASKGILSSPHSV 122
+ ++ FG D D++ ++ +E R LE ++ P++V
Sbjct: 63 KHAEEFGIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTV 122
Query: 123 YIANLNRTITSRYIVVSTGGS----PNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGY 178
+ I ++ IV++TG P G L +TSD+ F L LP+S +IGGG
Sbjct: 123 EVN--GERIEAKNIVIATGSRVPPIPGVWLILGDRL-LTSDDAFELDKLPKSLAVIGGGV 179
Query: 179 IAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV-VS 237
I +E L+ LG K T+ RG+ IL D ++ + ++ S+ ++ + SV S
Sbjct: 180 IGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKIL-SKEFKIKLGAKVTSVEKS 238
Query: 238 ESGQLKSILKSGKIVK--TDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295
+++ + K GK D V++A GR P T G+GLE G+++DE G + D +++T+V
Sbjct: 239 GDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSV 298
Query: 296 QSIFSLGDISGHIQLTPVAIH---AAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVG 352
I++ GD++G L A AA E D Y +P+ VF+ P+IASVG
Sbjct: 299 PGIYAAGDVNGKPPLLHEAADEGRIAA---ENAAGDVAGGVRYHPIPSVVFTDPQIASVG 355
Query: 353 LTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT-----------IMKIIVHADNHKVLG 401
LTEEE Y P FE +K+ ++LG
Sbjct: 356 LTEEELKAAG---IDYVVGEVP--------FEAQGRARVMGKNDGFVKVYADKKTGRLLG 404
Query: 402 VHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSE 441
HI+G +A +I +L ++ G +D R HPT SE
Sbjct: 405 AHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSE 444
>gnl|CDD|180558 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 288 bits (740), Expect = 2e-78
Identities = 152/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63
EYD++VIGAG G +A AAQLG KVAI E+ ++GGTC+ RGCIP K + +A++ ++
Sbjct: 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEA 63
Query: 64 EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVY 123
S+ FG ++ D++ + +N ++RL L+ V+I + L P++V
Sbjct: 64 RHSEDFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVR 123
Query: 124 IANLN--RTITSRYIVVSTGGSPNR---MDFKGSDLCITSDEIFSLKSLPQSTLIIGGGY 178
+ + +T T++ I+++TG P ++ G + TSDE +L +P+S ++IGGGY
Sbjct: 124 VMTEDGEQTYTAKNIILATGSRPRELPGIEIDG-RVIWTSDEALNLDEVPKSLVVIGGGY 182
Query: 179 IAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238
I VEFA SLG++ T+V IL D +I + + RG+++ + V
Sbjct: 183 IGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQT 242
Query: 239 SGQLKSILKSGKIVKT---DQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295
+ L+ G +T D V++AVGR P T +GLE++GVK D GFI D RTNV
Sbjct: 243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNV 301
Query: 296 QSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTE 355
+I+++GDI G L A E + NP DY +P ++ PE+ASVGLTE
Sbjct: 302 PNIYAIGDIVGGPMLAHKASAEGIIAAEAI-AGNPHPIDYRGIPAVTYTHPEVASVGLTE 360
Query: 356 EEAVQKFCRLEIYKTKFFPMK---CFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEI 412
+A ++ +++ K FP L+ +K+I + +VLG H++G ASE+
Sbjct: 361 AKAKEEGFDVKVVK---FPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASEL 417
Query: 413 IQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
IQ + + +D + HPT SE L
Sbjct: 418 IQEAQLAINWEATPEDLALTIHPHPTLSEAL 448
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 278 bits (712), Expect = 2e-75
Identities = 160/474 (33%), Positives = 241/474 (50%), Gaps = 40/474 (8%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKLM 53
+ YDLVVIG GS G+ +A+ AA GKKVA+ + ++ +GGTCV GC+PKKLM
Sbjct: 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLM 63
Query: 54 FYASQYSEYFE-DSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFAS 112
YA+ F DSQ +GW SF+W L+T + L Y L S+ VE
Sbjct: 64 HYAANIGSIFHHDSQMYGWKTS-SSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING 122
Query: 113 KGILSSPHSVYIANLNR--TITSRYIVVSTGGSPN-RMDFKGS-DLCITSDEIFSLKSLP 168
L H+V + ++ TIT++YI+++TGG P+ D G+ + ITSD+IFSL P
Sbjct: 123 LAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSITSDDIFSLSKDP 182
Query: 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFH 228
TLI+G YI +E AG LN LG T+ R + L FD + + + M +G
Sbjct: 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLE 241
Query: 229 NDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFII-- 286
++ ++K + G D V+ A GR P G+ L +GV ++++ II
Sbjct: 242 GVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAP 301
Query: 287 TDCYSRTNVQSIFSLGDIS-GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSK 345
DC TN+ +IF++GD+ G +LTPVAI A +FK + DY +PT +F+
Sbjct: 302 NDC---TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTP 358
Query: 346 PEIASVGLTEEEAVQKFCR--LEIYKTKFFPMKCFLSKRFEHTIMK-------------- 389
E + G + E A+ K+ +E Y +F ++ R +H +
Sbjct: 359 IEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLA 418
Query: 390 --IIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSE 441
+ V ++++KV+G H +G A EI Q + LK G K DFD + +HPT +E
Sbjct: 419 KLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAE 472
>gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 270 bits (693), Expect = 5e-73
Identities = 136/463 (29%), Positives = 219/463 (47%), Gaps = 20/463 (4%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60
YD +VIGAG +G A AA LG KVA+ E +GGTCV GC+P K + +++ +
Sbjct: 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAA 61
Query: 61 EYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLES-AGVEIFASKGILSS 118
+ +G SV S D+++++ + + +R L GV++F S
Sbjct: 62 HLARRAAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES 121
Query: 119 PHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLC--ITSDEIFSLKSLPQSTLIIGG 176
P++V + T+ ++ I ++TG G D +T++ IFSL LP+ +IIGG
Sbjct: 122 PNTVRVGG--ETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETIFSLDELPEHLVIIGG 179
Query: 177 GYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVV 236
GYI +EFA + GS+ T++ RG +L + D D+ + +++ G+ V N V
Sbjct: 180 GYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVE 239
Query: 237 SESGQLKSILKS---GKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT 293
+ + L + +++AVGR P T +GLE GV+ D G+I D RT
Sbjct: 240 RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT 299
Query: 294 NVQSIFSLGDISGHIQLTPVAIHAAACFVE-TVFKDNPTIPDYDLVPTAVFSKPEIASVG 352
I++ GD +G T A + A + + D +VP A ++ P +A VG
Sbjct: 300 TNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDR-IVPYATYTDPPLARVG 358
Query: 353 LTEEEAVQKFCRLEIYKTKFFPMKCF---LSKRFEHTIMKIIVHADNHKVLGVHILGHEA 409
+TE EA + R+ + PM + K MK++V AD ++LG ILG
Sbjct: 359 MTEAEARKSGRRVLVGTR---PMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHG 415
Query: 410 SEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM---YNP 449
E+I + + AG R + +HPT SE + T+
Sbjct: 416 DEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALRR 458
>gnl|CDD|162675 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH.
Length = 463
Score = 259 bits (663), Expect = 1e-69
Identities = 134/449 (29%), Positives = 216/449 (48%), Gaps = 15/449 (3%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE 64
YDLV+IG+G++ +A AA+LG VA+ E +GGTCV GC+P K++ A++ + Y
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYAR 60
Query: 65 DSQGFGWSVDHKSFDWQSLITAQNKELSRL-ESFYHNRLESAGVEIFASKGILSSPHSVY 123
FG + D+ L+ + + + L Y + L S GV+ + P +V
Sbjct: 61 KPP-FGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVK 119
Query: 124 IANLNRTITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTLIIGGGYIAV 181
+ ++ +++TG P G +TS+E +L +P+S +IGGG I V
Sbjct: 120 VDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIPESLAVIGGGAIGV 179
Query: 182 EFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQ 241
E A LGS+ T++ R + +L + + +I + + + G++V VS G
Sbjct: 180 ELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEV-VTSAQVKAVSVRGG 238
Query: 242 LKSI----LKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297
K I V+ D++++A GR P T G+GLEK GVK+DE G I+ D RT+
Sbjct: 239 GKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPG 298
Query: 298 IFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEE 357
I++ GD++G +QL VA E D ++P VF+ P +ASVGLTE E
Sbjct: 299 IYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAE 358
Query: 358 AVQKFCRLEIYKTKFFPMKCF---LSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQ 414
A + + P+ R +K++ KVLGV ++ EA+E+I
Sbjct: 359 AQKA---GIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVIN 415
Query: 415 VLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
+ ++AG D + PT +E L
Sbjct: 416 EAALAIRAGMTVDDLIDTLHPFPTMAEGL 444
>gnl|CDD|180333 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 250 bits (642), Expect = 4e-67
Identities = 144/462 (31%), Positives = 234/462 (50%), Gaps = 27/462 (5%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKK-LMFYASQY 59
M EYDLV+IG G G +A A QLG K A+ E+ ++GGTC+ +GCIP K L+ A +
Sbjct: 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVF 60
Query: 60 SEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKG-IL-- 116
+ S FG SV + D+ + ++ + RL L+ +++F G IL
Sbjct: 61 QTAKKASP-FGISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGP 119
Query: 117 --SSPH----SVYIAN-LNRTITSRYIVVSTGGSPNR---MDFKGSDLCITSDEIFSLKS 166
SP SV N I ++++TG P + F G + I+SDE SL++
Sbjct: 120 SIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYV-ISSDEALSLET 178
Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226
LP+S +I+GGG I +E+A +L G + T+V + IL D+++ + + ++ G++V
Sbjct: 179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRV 238
Query: 227 FHNDTI--ESVVSESGQLKSILKSGKI--VKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282
+ ++ + G L +G+ ++ D+V+++VGR P T GIGLE + + E
Sbjct: 239 VTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EG 297
Query: 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAV 342
GFI D + +T + I+++GD+ G QL VA+ E + P DY +P
Sbjct: 298 GFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACC 357
Query: 343 FSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCF---LSKRFEHTIMKIIVHADNHKV 399
++ PE+ASVGLTEEEA + ++ K FP L+ +K++ D H +
Sbjct: 358 YTDPEVASVGLTEEEAKEAG--YDV-KVGKFPFAANGKALTYGESDGFVKVVADRDTHDI 414
Query: 400 LGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSE 441
LGV +G +E+I + L+ G + + HPT SE
Sbjct: 415 LGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSE 456
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 244 bits (626), Expect = 3e-65
Identities = 127/431 (29%), Positives = 204/431 (47%), Gaps = 35/431 (8%)
Query: 4 EYDLVVIGAGS-SGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEY 62
YDL++IG GS + + R A K++AI E+ GGTC+ GCIP K+ YA+ +
Sbjct: 1 HYDLIIIGTGSGNSILDERFA---DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVART 57
Query: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESF------YHNRLESAGVEIFASKGIL 116
++ G + W + ++ R++ Y R ++ ++++
Sbjct: 58 IREAARLGVDAELDGVRWPDI---VSRVFGRIDPIAAGGEEYRGR-DTPNIDVYRGHARF 113
Query: 117 SSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCI--TSDEIFSLKSLPQSTLII 174
P ++ IT+ +V++ G P TSD I L LP+S +I+
Sbjct: 114 IGPKTLRTG-DGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELPESLVIV 172
Query: 175 GGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIES 234
GGG+IA EFA + ++LG + T+V R +L D DI + T++ R V +
Sbjct: 173 GGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKR-WDVRLGRNVVG 231
Query: 235 VVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTN 294
V + + L G V+ D +++A GR P + GV +DE+G ++ D Y RT+
Sbjct: 232 VSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTS 291
Query: 295 VQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-DYDLVPTAVFSKPEIASVGL 353
+ +F+LGD+S QL VA H A + + I D+ VP AVF+ P+IASVGL
Sbjct: 292 AEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGL 351
Query: 354 TEEEAVQKFCRLEIYKTKF------FPMKCFLSKRFEHT--IMKIIVHADNHKVLGVHIL 405
TE EA + + + + M E T +K+I D ++LG HI+
Sbjct: 352 TENEARAAGLDITVKVQNYGDVAYGWAM--------EDTTGFVKLIADRDTGRLLGAHII 403
Query: 406 GHEASEIIQVL 416
G +AS +IQ L
Sbjct: 404 GPQASTLIQPL 414
>gnl|CDD|179973 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 231 bits (592), Expect = 3e-61
Identities = 138/438 (31%), Positives = 211/438 (48%), Gaps = 49/438 (11%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYA-SQYS 60
Y+YDLVVIG+G +G +A AA+LGK+VA+ E YR VGG C G IP K + A +
Sbjct: 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLI 63
Query: 61 EYFEDSQGFGWSV-DHKSFDWQSLITAQ---NKELSRLESFY-HNRLESAGVEIFASKGI 115
+ ++ + V +F L A NK++ Y NR V++ +
Sbjct: 64 GFNQNPLYSSYRVKLRITFA-DLLARADHVINKQVEVRRGQYERNR-----VDLIQGRAR 117
Query: 116 LSSPHSVYIANLN---RTITSRYIVVSTGGSPNR---MDFKGSDLCITSDEIFSLKSLPQ 169
PH+V + + T+T+ IV++TG P R +DF + SD I SL LP+
Sbjct: 118 FVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRI-YDSDSILSLDHLPR 176
Query: 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHN 229
S +I G G I E+A I +LG K TL+ + +LS D +I L+ + G+ + HN
Sbjct: 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHN 236
Query: 230 DTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDC 289
+ +E V + LKSGK +K D ++ A GRT T G+ LE G++ D G + +
Sbjct: 237 EEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE 296
Query: 290 YSRTNVQSIFSLGDISGHIQLTPVAI---HAAACFVETVFKDNPTIPDYDLVPTAVFSKP 346
+T V I+++GD+ G L ++ AA T + +PT +++ P
Sbjct: 297 NYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHA----VGEATAHLIEDIPTGIYTIP 352
Query: 347 EIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT----IM-------KIIVHAD 395
EI+SVG TE+E P + + RF+ I KI+ H +
Sbjct: 353 EISSVGKTEQEL----------TAAKVPYEVGRA-RFKELARAQIAGDNVGMLKILFHRE 401
Query: 396 NHKVLGVHILGHEASEII 413
++LGVH G A+EII
Sbjct: 402 TLEILGVHCFGERATEII 419
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 219 bits (559), Expect = 1e-57
Identities = 131/453 (28%), Positives = 217/453 (47%), Gaps = 28/453 (6%)
Query: 5 YDLVVIGAGS-SGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63
YDL++IG GS + + R A K++AI E+ GGTC+ GCIP K+ YA++ ++
Sbjct: 3 YDLIIIGTGSGNSIPDPRFA---DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSI 59
Query: 64 EDSQGFGWSVDHKSFDWQSLIT----------AQNKELSRLESFYHNRLESAGVEIFASK 113
+S G + S W +++ A E R N ++++
Sbjct: 60 GESARLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPN------IDVYDGH 113
Query: 114 GILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCI---TSDEIFSLKSLPQS 170
P ++ + IT IV++ G P + +D + T+++I L LP+S
Sbjct: 114 ARFVGPRTLRTGD-GEEITGDQIVIAAGSRP-YIPPAIADSGVRYHTNEDIMRLPELPES 171
Query: 171 TLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHND 230
+I+GGGYIA EFA + ++LG++ T+V R +L D DI T++ + +
Sbjct: 172 LVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKK-WDIRLGR 230
Query: 231 TIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCY 290
+ +V + + L G V D +++A GR P + E GV++DE+G I D Y
Sbjct: 231 NVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEY 290
Query: 291 SRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-DYDLVPTAVFSKPEIA 349
RT+ + +++LGD+S QL VA A + N +D VP+AVF+ P+IA
Sbjct: 291 GRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIA 350
Query: 350 SVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEA 409
+VGLTE+EA + + + + + + K+I D K+LG HI+G +A
Sbjct: 351 TVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQA 410
Query: 410 SEIIQVLGVCLKAGCVKKDFDRCMA-VHPTSSE 441
S +IQ L + G ++ R +HP E
Sbjct: 411 SSLIQPLITAMAFGLDAREMARKQYWIHPALPE 443
>gnl|CDD|180529 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 214 bits (547), Expect = 4e-56
Identities = 128/468 (27%), Positives = 215/468 (45%), Gaps = 36/468 (7%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-------RVGGTCVIRGCIPKKLM 53
M ++D+VVIGAG G +A AAQLG KVA E + +GGTC+ GCIP K +
Sbjct: 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKAL 60
Query: 54 FYASQYSEYFEDSQ----GFGWSVDHKSFDWQSLITAQNKELSRLES-----FYHNRLES 104
SE FE++ G VD D +I ++K + ++ F N++
Sbjct: 61 L---ASSEEFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITV 117
Query: 105 -AGVEIFASKGILSSPHSVYIAN-LNRTITSRYIVVSTGGSPNRMDFK--GSDLCITSDE 160
G F K + + + + IT+++++++TG P + + + + +
Sbjct: 118 LKGRGSFVGKT--DAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTG 175
Query: 161 IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI 220
+ +P+ +IG G I +E + LG++ T++ + L+ D + +
Sbjct: 176 ALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFT 235
Query: 221 SRGMQVFHNDTIESV-VSESG---QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVG 276
+G+ + I + G + ++ D++I+++GR P T G+GLE VG
Sbjct: 236 KQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVG 295
Query: 277 VKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYD 336
+K+DE GFI D + RTNV +++++GD+ L A E + I DY+
Sbjct: 296 LKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHI-DYN 354
Query: 337 LVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKR--FEHTIM-KIIVH 393
+P +++ PEIA VG TE++ + YK FP E KII
Sbjct: 355 TIPWVIYTSPEIAWVGKTEQQLKAEGVE---YKAGKFPFMANGRALAMGEPDGFVKIIAD 411
Query: 394 ADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSE 441
A ++LGVH++G ASE+I V ++ +D R HPT SE
Sbjct: 412 AKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSE 459
>gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 277
Score = 197 bits (503), Expect = 4e-51
Identities = 90/304 (29%), Positives = 154/304 (50%), Gaps = 37/304 (12%)
Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFED 65
D+V+IG G +G+ +A A+LG KVA+ E + GGTC RGCIPKKL+ A++ +
Sbjct: 1 DVVIIGGGPAGLAAAIYLARLGLKVALIE--KEGGTCYNRGCIPKKLLLEAAEVGK---- 54
Query: 66 SQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIA 125
D + L +++ + L GV I + V +
Sbjct: 55 ------------LDLRPLEQYKDEGI--------EVLLGTGVT-----AIDKAGKKVTLD 89
Query: 126 NLNRTITSRYIVVSTGGSPNRMDFKGSDLC----ITSDEIFSLKSLPQSTL-IIGGGYIA 180
+ + +T +V++TG P R G +L +TSD+ +L+ P+ + ++GGGYI
Sbjct: 90 D-GKELTYDKLVIATGARPRRPPIPGVELDGVFYLTSDDALALREKPKKRVVVVGGGYIG 148
Query: 181 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG 240
+E A L LG++ T+V R + +L++ D +IR L + + G + +E VV
Sbjct: 149 LELAAALAKLGAEVTVVERRDRLLARADDEIRAALLEKLEELGGVIVLLAKVEVVVEVVE 208
Query: 241 QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS 300
+ + ++ D ++A+GR P + LEK G+++DE G+I+ D Y RT+V I++
Sbjct: 209 GVVVKVVLEDGIEADADLVAIGRGPNPNTLLLEKAGLELDERGYIVVDEYLRTSVPGIYA 268
Query: 301 LGDI 304
GD+
Sbjct: 269 AGDV 272
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 196 bits (501), Expect = 8e-51
Identities = 129/459 (28%), Positives = 217/459 (47%), Gaps = 40/459 (8%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--GGTCVIRGCIPKKLMFYASQYSEY 62
YDL+VIG G +G A A GKKVA+ EE + GGTC+ GCIP K + A++
Sbjct: 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE---- 59
Query: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV 122
K+ ++ ++ +N SRL + L +GV+++ ++ S +
Sbjct: 60 -------------KNLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVI 106
Query: 123 YIANLNRTI--TSRYIVVSTGGSPNRMDFKG---SDLCITSDEIFSLKSLPQSTLIIGGG 177
+ + I T+ IV++TG N + G S S I SL++LP+ IIGGG
Sbjct: 107 EVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGIIGGG 166
Query: 178 YIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237
I +EFAG+ N LGSK T++ ++IL + + + M G+ N V +
Sbjct: 167 NIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKN 226
Query: 238 ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297
+ Q+ ++ + + D ++ A GR P T +GLE +++ E G I D Y +T+V
Sbjct: 227 DGDQV-LVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPG 285
Query: 298 IFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDL-----VPTAVFSKPEIASVG 352
+F++GD++G Q T +++ VF Y L VPT +F P ++ VG
Sbjct: 286 VFAVGDVNGGPQFTYISLDD----FRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVG 341
Query: 353 LTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT---IMKIIVHADNHKVLGVHILGHEA 409
LTE+EA + Y K + + K++V+ + ++LG + G +
Sbjct: 342 LTEKEAKEAGLP---YAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGS 398
Query: 410 SEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYN 448
EII ++ + + F + + HPT +E L ++N
Sbjct: 399 QEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLFN 437
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 192 bits (491), Expect = 1e-49
Identities = 123/466 (26%), Positives = 208/466 (44%), Gaps = 38/466 (8%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQY 59
M + +VV+GAG +G +A AA LG + E Y GG C+ GCIP K + + ++
Sbjct: 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKV 60
Query: 60 SEYFEDSQGF---GWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGIL 116
E+++ G D + + K + +L + V + G
Sbjct: 61 ---IEEAKALAEHGIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKF 117
Query: 117 SSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQST 171
+ +++ + + I +++ G P ++ F D S + LK +P+
Sbjct: 118 TGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRL 177
Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLT-------DVMISRGM 224
L++GGG I +E + + LGS+ +V + ++ D DI + T ++M+ +
Sbjct: 178 LVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQFNIMLETKV 237
Query: 225 QVFHNDTIESVVSESGQLKSILKSG--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282
V+ G K + + D V++AVGR P + EK GV++DE
Sbjct: 238 TAVEAKEDGIYVTMEG------KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDER 291
Query: 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAV 342
GFI D RTNV IF++GDI G L +H E V D ++P+
Sbjct: 292 GFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAE-VIAGKKHYFDPKVIPSIA 350
Query: 343 FSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRF-----EHTIMKIIVHADNH 397
+++PE+A VGLTE+EA ++ Y+T FP S R + K+I + H
Sbjct: 351 YTEPEVAWVGLTEKEAKEEG---IEYETATFPWAA--SGRAIASDCADGMTKLIFDKETH 405
Query: 398 KVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
+VLG I+G A E++ +G+ ++ GC +D + HPT E +
Sbjct: 406 RVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESV 451
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 187 bits (476), Expect = 6e-48
Identities = 132/449 (29%), Positives = 221/449 (49%), Gaps = 19/449 (4%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66
LVVIG G +G +A AAQ GK V + +E +GGTC+ GC+P K + +++ + + +
Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKA 62
Query: 67 QGFG--WSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYI 124
FG S DW+ + +++ +++L ++ +++ K + H V +
Sbjct: 63 NHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRV 122
Query: 125 ANLNR--TITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTLIIGGGYIA 180
++ + + +++ G P + F D I S SL S+P S LI+GGG I
Sbjct: 123 EYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLIVGGGVIG 182
Query: 181 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG 240
EFA I + LG+K T+V +L D DI L + + + G+++F ++ + S
Sbjct: 183 CEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKK 242
Query: 241 QLKSILKSGKI--VKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSI 298
Q G I V + V+++VGR PR + LEK GV+ G + + + +TNV I
Sbjct: 243 QA-LFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNE-HMQTNVPHI 300
Query: 299 FSLGDISGHIQLTPVAIH----AAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLT 354
++ GD+ G IQL VA H AA K N Y VP +++ PEIASVGLT
Sbjct: 301 YACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVN-----YHAVPRCIYTSPEIASVGLT 355
Query: 355 EEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQ 414
E++A +++ + I + F L + +K+IV +++G+ I+G A+E+I
Sbjct: 356 EKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIG 415
Query: 415 VLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
V + + +A HPT SE +
Sbjct: 416 QGTVMIHTEVTADIMEDFIAAHPTLSEAI 444
>gnl|CDD|181132 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 184 bits (469), Expect = 4e-47
Identities = 135/463 (29%), Positives = 229/463 (49%), Gaps = 31/463 (6%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60
M YD+VV+GAG G +A AAQLG K A+ E+ GG C+ GCIP K + ++ +
Sbjct: 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELA 60
Query: 61 EYF-EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP 119
F ++++ FG S + +FD+ + K H ++ + G +
Sbjct: 61 HIFTKEAKTFGISGE-VTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDA 119
Query: 120 HSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGSDL---CITSDEIFSLKSLPQSTLI 173
+++ + + T+T +++TG S + G+ L +T +E + LP+S +I
Sbjct: 120 NTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PGTSLSENVVTYEEQILSRELPKSIVI 177
Query: 174 IGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIE 233
G G I +EFA +L + G T+V + L D+++ + + G+++ +E
Sbjct: 178 AGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVE 237
Query: 234 SVVSESGQLKSIL--KSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDC 289
S+ ++ + K GK ++ D+V+ A+G PR G GLEK GV + + G I D
Sbjct: 238 SIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD 297
Query: 290 YSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF-KDNPTIPDYDLVPTAVFSKPEI 348
Y RTNV I+++GD++ +QL VA ET+ + + DY ++P A F +P++
Sbjct: 298 YMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQV 357
Query: 349 ASVGLTEEEAVQKFCRLEIYKTKF--FPMKCFLSKRFEHTI------MKIIVHADNHKVL 400
AS GLTEE+A R E Y K FP F + H + +K++ A ++L
Sbjct: 358 ASFGLTEEQA-----REEGYDVKVAKFP---FTANGKAHGLGDPTGFVKLVADAKYGELL 409
Query: 401 GVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
G H++G + SE++ L + K ++ R + HPT SE L
Sbjct: 410 GGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEAL 452
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 164 bits (416), Expect = 4e-41
Identities = 113/457 (24%), Positives = 213/457 (46%), Gaps = 33/457 (7%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--GGTCVIRGCIPKKLMFYASQYSE 61
+Y V+IG G +G A A+ G +VA+ E+ GGTC+ GCIP K + + +Q
Sbjct: 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ--- 59
Query: 62 YFEDSQGFGWSVDHKSFDWQSLITAQNKELSRL-ESFYHNRLESAGVEIFASKGILSSPH 120
+ D+ I +N+ ++ L +HN + +++ + + H
Sbjct: 60 --------------QHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNH 105
Query: 121 S--VYIANLNRTITSRYIVVSTGGS---PNRMDFKGSDLCITSDEIFSLKSLPQSTLIIG 175
S V+ N I I ++TG P + S + +LK LP I+G
Sbjct: 106 SLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILG 165
Query: 176 GGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235
GGYI VEFA + + GSK T++ + L + D DI + ++ +G+ + N +E +
Sbjct: 166 GGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERI 225
Query: 236 VSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295
Q++ + ++ D +++A GR P T + E G+ ++E G I+ D Y T
Sbjct: 226 SHHENQVQVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTA 284
Query: 296 QSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNP-TIPDYDLVPTAVFSKPEIASVGLT 354
+I+++GD++G +Q T +++ + + + + D VP +VF P ++ VG+T
Sbjct: 285 DNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMT 344
Query: 355 EEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT---IMKIIVHADNHKVLGVHILGHEASE 411
EE+A + +++ P+ R + ++K IV ++LG +L ++ E
Sbjct: 345 EEQARESGADIQVVT---LPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHE 401
Query: 412 IIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYN 448
+I ++ + + AG + HP+ SE L +++
Sbjct: 402 MINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438
>gnl|CDD|181141 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 161 bits (410), Expect = 3e-40
Identities = 112/372 (30%), Positives = 176/372 (47%), Gaps = 30/372 (8%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66
+V+IG G G +A +AAQLG V + E +GG V+ C+P K + ++ +
Sbjct: 4 IVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRA 63
Query: 67 QGFGWSV---DHKSFDWQSLITAQNKELSRLESF-YHNRLESAGVEIFASKGILSS---- 118
G D + A+ K L+ +S RLE GV + A +G L
Sbjct: 64 AELGIRFIDDGEARVDLP-AVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLG 122
Query: 119 PHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTLI 173
PH V + + T+ + ++++TG SP + D +T +++ L LP+ ++
Sbjct: 123 PHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWRQLYDLDELPEHLIV 182
Query: 174 IGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIE 233
+G G EFA LG K TLV+ + +L D+D + L +V RGM V E
Sbjct: 183 VGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAE 242
Query: 234 SVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT 293
SV + L G+ V+ ++AVG P T G+GLE+ GV++ +G I D SRT
Sbjct: 243 SVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT 302
Query: 294 NVQSIFSLGDISGHIQLTPVA-----I---HAAACFVETVFKDNPTIPDYDLVPTAVFSK 345
+V I++ GD +G + L VA I HA E V +P V + VF++
Sbjct: 303 SVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALG---EAV---SPL--RLKTVASNVFTR 354
Query: 346 PEIASVGLTEEE 357
PEIA+VG+++
Sbjct: 355 PEIATVGVSQAA 366
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 160 bits (405), Expect = 8e-40
Identities = 126/460 (27%), Positives = 210/460 (45%), Gaps = 30/460 (6%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIPKKLMFYASQYSEY 62
YD+V+IG G G +A A QLG KVA E +GGTC+ GC+P K + +AS E
Sbjct: 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHAS---EL 59
Query: 63 FEDSQG-----FGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILS 117
+E + G G V + + ++ +++ + L V+ G L
Sbjct: 60 YEAASGGEFAHLGIEVK-PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLD 118
Query: 118 SPHSVYIA---NLNRTITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTL 172
V + + ++ IV++TG P + D I S SL +P+ +
Sbjct: 119 GVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLV 178
Query: 173 IIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232
+IG G I +E + LG++ T+V + I D++ + L + +GM+ +
Sbjct: 179 VIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKV 238
Query: 233 ESVVSESGQLKSILK-----SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIIT 287
+ + + L+ + + ++ D V++A+GR P T G+GLE VG++ D+ G +
Sbjct: 239 TGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLAN 298
Query: 288 DCYSRTNVQSIFSLGDI-SGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKP 346
D + RT+V ++ +GD+ SG + A AC K +Y L+P ++++P
Sbjct: 299 D-HHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGK--AGEVNYGLIPGVIYTRP 355
Query: 347 EIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT---IMKIIVHADNHKVLGVH 403
E+A+VG TEE+ K YK FP + H KI+ A +VLGVH
Sbjct: 356 EVATVGKTEEQL--KAEGRA-YKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVH 412
Query: 404 ILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
++G SE+I V ++ +D HPT SE L
Sbjct: 413 MVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEAL 452
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 152 bits (386), Expect = 1e-37
Identities = 135/538 (25%), Positives = 219/538 (40%), Gaps = 97/538 (18%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAIC--EEYRVGGTCVIRGCIPKKLMFYAS-QYS 60
EYD+ +IG G G +A A + G KV I ++ +GGTCV GCIP K + YA+ +Y
Sbjct: 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYR 175
Query: 61 EYFEDSQGFGWSVDHKSFDWQSLITAQNKEL---------SRLESFYH---NRLESAGVE 108
E ++ + + + +F + +L ++L+ + ++L
Sbjct: 176 ELKNLAKLYTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIEN 235
Query: 109 IFASKGI-LSSPHSVYIAN-----LNRTITS---------RYIVVSTGGSPNRMDFKGSD 153
SK +S H I TI S + I+++TG +PN D D
Sbjct: 236 GLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVD 295
Query: 154 --LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDI 211
TSD L+ L I+G G I +EF I +LGS+ +L D+D+
Sbjct: 296 QKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADV 355
Query: 212 RQGLTDVMI-SRGMQVFHNDTIESVVSESGQL---------------KSILKSGKIVKT- 254
+ V + S+ ++V N IE V + G I +T
Sbjct: 356 AKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETY 415
Query: 255 -DQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTN------VQSIFSLGDISGH 307
D ++A GR P T +GL+K+ ++M GF+ D + R +IF +GD +G
Sbjct: 416 VDSCLVATGRKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGK 474
Query: 308 IQLTPVAIHAAACFVETVFKDN------------PTIPDYDLVPTAVFSKPEIASVGLTE 355
L A H A V+ + Y +P+ ++ PE+A +GLTE
Sbjct: 475 QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTE 534
Query: 356 EEAVQKFCRLEIYK-TKFFPMK----CFLSKRF-----------------EHT--IMKII 391
+EA + + + F+ C + F ++T ++KI+
Sbjct: 535 KEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIV 594
Query: 392 VHADNHKVLGVHILGHEASEIIQ--VLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447
D ++LG+ I+G AS +I VL + LK KD + HPT SE L +
Sbjct: 595 YLKDTKEILGMFIVGSYASILIHEGVLAINLKLSV--KDLAHMVHSHPTISEVLDAAF 650
>gnl|CDD|173190 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 147 bits (373), Expect = 4e-36
Identities = 109/426 (25%), Positives = 190/426 (44%), Gaps = 31/426 (7%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQYSEYFED 65
+ +IG+GS+ +A AA+ G +V I E V GG CV GC+P K++ A+Q + + +
Sbjct: 19 VAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLA-HQQR 77
Query: 66 SQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLES-----------AGVEIFASKG 114
S F + L+ Q + +R+E H + +S G F
Sbjct: 78 SNPFDGVEAVAPSIDRGLLLHQ--QQARVEELRHAKYQSILDGNPALTLLKGYARFKDGN 135
Query: 115 ILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKG--SDLCITSDEIFSLKSLPQSTL 172
L R + + +++TG +P G TS E LP S
Sbjct: 136 TLVVRLH---DGGERVLAADRCLIATGSTPTIPPIPGLMDTPYWTSTEALFSDELPASLT 192
Query: 173 IIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232
+IG +A E A LGS+ T++ R +++L + D + + LT G++V N+T
Sbjct: 193 VIGSSVVAAEIAQAYARLGSRVTILAR-STLLFREDPLLGETLTACFEKEGIEVL-NNTQ 250
Query: 233 ESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSR 292
S+V + ++ ++++++ GR T + LE VGV D +G I+ +
Sbjct: 251 ASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAME 310
Query: 293 TNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVG 352
T+ I++ GD S Q VA A + + N T+ D +P +F+ P++A+VG
Sbjct: 311 TSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATL-DLSAMPAVIFTDPQVATVG 369
Query: 353 LTEEEA----VQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHE 408
L+E +A ++ R+ + + F + F +K++ K++G IL HE
Sbjct: 370 LSEAKAHLSGIETISRVLTMENVPRALANFETDGF----IKLVAEEGTRKLIGAQILAHE 425
Query: 409 ASEIIQ 414
E+IQ
Sbjct: 426 GGELIQ 431
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 146 bits (370), Expect = 1e-35
Identities = 111/436 (25%), Positives = 198/436 (45%), Gaps = 51/436 (11%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66
+ VIG+G + + +A A + G +V + E +GGTCV GC+P K+M A+ + +S
Sbjct: 101 VAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRES 160
Query: 67 QGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGIL-SSP------ 119
G +S + AQ + +R++ H + E GIL +P
Sbjct: 161 PFDGGIAATVPTIDRSRLLAQQQ--ARVDELRHAKYE----------GILDGNPAITVLH 208
Query: 120 --------HSVYIANLN---RTITSRYIVVSTGGSPNRMDFKG-SDLCI-TSDEIFSLKS 166
++ + + R + +++TG SP G + TS E +
Sbjct: 209 GEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWTSTEALVSDT 268
Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226
+P+ +IG +A+E A LGSK T++ R +++ + D I + +T + G++V
Sbjct: 269 IPERLAVIGSSVVALELAQAFARLGSKVTILAR-STLFFREDPAIGEAVTAAFRAEGIEV 327
Query: 227 FHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFII 286
+ V G+ G++ + D++++A GR P T + L+ GV ++ G I+
Sbjct: 328 LEHTQASQVAHVDGEFVLTTGHGEL-RADKLLVATGRAPNTRSLALDAAGVTVNAQGAIV 386
Query: 287 TDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDL----VPTAV 342
D RT+V I++ GD + Q VA AAA T N T D L +P V
Sbjct: 387 IDQGMRTSVPHIYAAGDCTDQPQFVYVA--AAA---GTRAAINMTGGDAALDLTAMPAVV 441
Query: 343 FSKPEIASVGLTEEEA----VQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHK 398
F+ P++A+VG +E EA ++ R + F ++ F +K+++ + +
Sbjct: 442 FTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF----IKLVIEEGSGR 497
Query: 399 VLGVHILGHEASEIIQ 414
++GV + EA E+IQ
Sbjct: 498 LIGVQAVAPEAGELIQ 513
>gnl|CDD|173157 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 144 bits (365), Expect = 4e-35
Identities = 111/426 (26%), Positives = 201/426 (47%), Gaps = 14/426 (3%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66
+ VIG+G S + +A A + G +V + E +GGTCV GC+P K+M A+ + +S
Sbjct: 9 IAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRES 68
Query: 67 Q-GFGWSVDHKSFDWQSLITAQNKELSRL-ESFYHNRL-ESAGVEIFASKGILSSPHSVY 123
G S D +L+ Q + L ES Y + L E+A + + + ++
Sbjct: 69 PFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLT 128
Query: 124 IANLN----RTITSRYIVVSTGGSPNRMDFKG-SDL-CITSDEIFSLKSLPQSTLIIGGG 177
+ LN +T+ + TG P G ++ +TS L +P+ L+IG
Sbjct: 129 VT-LNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELDHIPERLLVIGAS 187
Query: 178 YIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237
+A+E A LGS+ T++ R + +LS+ D + + + G++V T S V
Sbjct: 188 VVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVL-KQTQASEVD 245
Query: 238 ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297
+G+ + + ++ +Q+++A GRTP T + LE +GV+ E G I D + +T V
Sbjct: 246 YNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSG 304
Query: 298 IFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEE 357
I++ GD + Q VA + + + ++ D +P +F+ P++A+VGL+E E
Sbjct: 305 IYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASL-DLSAMPEVIFTDPQVATVGLSEAE 363
Query: 358 AVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLG 417
A + + + L +K++ + ++LGV ++ EA E+IQ
Sbjct: 364 AQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAV 423
Query: 418 VCLKAG 423
+ L+A
Sbjct: 424 MALRAR 429
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol.
Length = 427
Score = 122 bits (308), Expect = 2e-28
Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 59/332 (17%)
Query: 135 YIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLP--------------QSTLIIGGGYIA 180
Y+++S G SP + +G +L D +F+L++L ++ +IIGGGYI
Sbjct: 94 YLILSPGASPIVPNIEGINL----DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIG 149
Query: 181 VEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239
+E A L G TL+ R IL+K FD ++ Q + + + + + N+ ++S+
Sbjct: 150 IEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE-GE 208
Query: 240 GQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299
++K + SG + + D VILA G P + + G+K+ E G I + +T+V +I+
Sbjct: 209 ERVK-VFTSGGVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIY 265
Query: 300 SLGDIS----------GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAV--FSKPE 347
+ GD++ + L A E + ++ + T + F
Sbjct: 266 AAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGV--LGTNITKFFDLT 323
Query: 348 IASVGLTEEEAVQKFCRLEI-YKTKFFPMKCFLSKRFEHT---------IMKIIVHADNH 397
IAS G+TE EA +L I YKT F K H +K+I D
Sbjct: 324 IASTGVTENEAK----KLNIDYKTVFV-------KAKTHANYYPGNSPLHLKLIYEKDTR 372
Query: 398 KVLGVHILGHEASEI-IQVLGVCLKAGCVKKD 428
++LG +G E ++ I VL + AG KD
Sbjct: 373 RILGAQAVGKEGADKRIDVLAAAIMAGLTVKD 404
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 90.5 bits (225), Expect = 8e-19
Identities = 86/352 (24%), Positives = 138/352 (39%), Gaps = 92/352 (26%)
Query: 128 NRTITSRY--IVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLP--------------QST 171
Y ++++TG P K +L + +++LKS+ ++
Sbjct: 97 GSIFNDTYDKLMIATGARPIIPPIKNINL----ENVYTLKSMEDGLALKELLKDEEIKNI 152
Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-KFDSDIRQGLTDVMISRGMQVFHND 230
+IIG G+I +E LG ++ + IL FD +I + + + G+++ N+
Sbjct: 153 VIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNE 212
Query: 231 TIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCY 290
++S++ E + G+ + D VI+A G P T LE G+K +NG II D Y
Sbjct: 213 FVKSLIGEDKVEGVVTDKGEY-EADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEY 269
Query: 291 SRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTA--------- 341
T++++I++ GD A V N +P L TA
Sbjct: 270 GETSIENIYAAGD--------------CATIYNIVSNKNVYVP---LATTANKLGRMVGE 312
Query: 342 -------------------VFSKPEIASVGLTEEEAVQKFCRLEI-YKTKFFPMKCFLSK 381
V E A GLTEEEA + L I YKT F K
Sbjct: 313 NLAGRHVSFKGTLGSACIKVLDL-EAARTGLTEEEAKK----LGIDYKTVFIKDKN---- 363
Query: 382 RFEHT---------IMKIIVHADNHKVLGVHILGHEASEI-IQVLGVCLKAG 423
HT +K+I AD +LG I+G + + + I L V + A
Sbjct: 364 ---HTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAK 412
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 88.7 bits (220), Expect = 3e-18
Identities = 72/264 (27%), Positives = 112/264 (42%), Gaps = 40/264 (15%)
Query: 121 SVYIANLNRTITSRY--IVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLP---------- 168
+V N Y +++S G S N + F+ SD F+L++L
Sbjct: 92 TVLNRKTNEQFEESYDKLILSPGASANSLGFE-------SDITFTLRNLEDTDAIDQFIK 144
Query: 169 ----QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGM 224
L++G GYI++E L G TL+ R + I D+D+ Q + D + R +
Sbjct: 145 ANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREI 204
Query: 225 QVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGF 284
N+ I+++ KSGK+ D +I VG P + I E +K+D+ GF
Sbjct: 205 PYRLNEEIDAINGNE----VTFKSGKVEHYDMIIEGVGTHPNSKFI--ESSNIKLDDKGF 258
Query: 285 IITDCYSRTNVQSIFSLGDISG----HIQL---TPVA--IHAAACFVETVFKDNPTIPDY 335
I + TNV +I+++GDI H+ L P+A H AA V N TI
Sbjct: 259 IPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFK 318
Query: 336 DLVPTAV--FSKPEIASVGLTEEE 357
+ + F ASVG+ E
Sbjct: 319 GFLGNNIVKFFDYTFASVGVKPNE 342
>gnl|CDD|162288 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(PFAM:PF00070).
Length = 300
Score = 82.3 bits (204), Expect = 3e-16
Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 70/326 (21%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE 64
YD+++IGAG +G+ +A AA+ K I E GG + E
Sbjct: 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEV---------------E 45
Query: 65 DSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFA---SKGILSSPHS 121
+ GF I+ EL +E + G EI K LS
Sbjct: 46 NYPGFP-----------EGISGP--EL--MEKMK-EQAVKFGAEIIYEEVIKVDLSDRPF 89
Query: 122 VYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL--------CITSDEIFSLKSLPQSTLI 173
+ T++ ++++TG S ++ G D C T D F + +
Sbjct: 90 KVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKN---KEVAV 146
Query: 174 IGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQ----VFH- 228
+GGG A+E A L + K TLV R + KF ++ +++ R + F
Sbjct: 147 VGGGDSAIEEALYLTRIAKKVTLVHRRD----KFRAE------KILLDRLRKNPNIEFLW 196
Query: 229 NDTIESVVSESGQLKSIL------KSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282
N T++ +V ++ ++ + + +K D V +A+G P T L K +++DE
Sbjct: 197 NSTVKEIVGDNK-VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT---ELLKGLLELDEG 252
Query: 283 GFIITDCYSRTNVQSIFSLGDISGHI 308
G+I+TD RT+V +F+ GD+
Sbjct: 253 GYIVTDEGMRTSVPGVFAAGDVRDKG 278
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 59.2 bits (144), Expect = 2e-09
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 39/201 (19%)
Query: 137 VVSTGGSPNRMDFKGSDLCITSDEIFSLKSL------------PQSTLIIGGGYIAVEFA 184
V++TG S G +L +T L S Q L++GGG I E A
Sbjct: 104 VLATGASAFVPPIPGRELMLT------LNSQQEYRAAETQLRDAQRVLVVGGGLIGTELA 157
Query: 185 GILNSLGSKTTLVTRGNSILSKF-DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLK 243
L G TLV S+L+ ++ L + G+ + ++ + ++
Sbjct: 158 MDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIR 217
Query: 244 SILKSGKIVKTDQVILAVGRTPRT---TGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS 300
+ L SG+ ++ D VI A G P T GL N I+ D Y +T+ I++
Sbjct: 218 ATLDSGRSIEVDAVIAAAGLRPNTALARRAGL-------AVNRGIVVDSYLQTSAPDIYA 270
Query: 301 LGD---ISGH-------IQLT 311
LGD I+G IQL+
Sbjct: 271 LGDCAEINGQVLPFLQPIQLS 291
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit.
Length = 785
Score = 56.0 bits (135), Expect = 2e-08
Identities = 39/193 (20%), Positives = 89/193 (46%), Gaps = 13/193 (6%)
Query: 124 IANLNRTITSRYIVVSTGGSPNRMDFKGSDL--CI---TSDEIFSLKSLPQSTL---IIG 175
I + RT++ ++++TG P + G+D T +++ ++ ++ Q +IG
Sbjct: 88 ITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIG 147
Query: 176 GGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIES 234
GG + +E A L +LG +++ +++K D + L + +G+
Sbjct: 148 GGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVE 207
Query: 235 VVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTN 294
+V + + K G ++ D +++A G P + + G+K+ N II + +T+
Sbjct: 208 IVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE-LAVS-AGIKV--NRGIIVNDSMQTS 263
Query: 295 VQSIFSLGDISGH 307
I+++G+ + H
Sbjct: 264 DPDIYAVGECAEH 276
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 55.6 bits (134), Expect = 3e-08
Identities = 74/335 (22%), Positives = 125/335 (37%), Gaps = 92/335 (27%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCV----------IRGCIPKKLMF 54
YDL++IG G +G+ + A + I E+ GG I +LM
Sbjct: 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELM- 63
Query: 55 YASQYSEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKG 114
E + +Q FG + E+ ++ + I ++G
Sbjct: 64 -----QEMRQQAQDFG-------------VKFLQAEVLDVD------FDGDIKTIKTARG 99
Query: 115 ILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSD--------LCITSD-EIFSLK 165
+ +V IA TG SP ++ F G + C T D E F+
Sbjct: 100 DYKT-LAVLIA--------------TGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGM 144
Query: 166 SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGN----------------SILSKFDS 209
+ +IGGG+ A E A L SK T++ R I KF++
Sbjct: 145 DV----FVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNT 200
Query: 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269
++++ D + F N+ +G+ + K+ K T V + VG P +
Sbjct: 201 ELKEATGDDGLRYA--KFVNN-------VTGE-ITEYKAPKDAGTFGVFVFVGYAPSSE- 249
Query: 270 IGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304
L K V++D+ G+I T+ TNV +++ GD+
Sbjct: 250 --LFKGVVELDKRGYIPTNEDMETNVPGVYAAGDL 282
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 55.3 bits (133), Expect = 3e-08
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISR----GM 224
+S +I+G G I +E A K T++ +++ + Q ++ R G+
Sbjct: 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQ---RYLLQRHQQAGV 201
Query: 225 QVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVK--MDEN 282
++ N+ IE VV +++ L+SG+ ++ D VI +G + +++ + +D
Sbjct: 202 RILLNNAIEHVVDGE-KVELTLQSGETLQADVVIYGIGISAN------DQLAREANLDTA 254
Query: 283 GFIITDCYSRTNVQSIFSLGDI 304
I+ D RT +IF+ GD+
Sbjct: 255 NGIVIDEACRTCDPAIFAGGDV 276
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 49.8 bits (119), Expect = 1e-06
Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 56/215 (26%)
Query: 135 YIVVSTGGSPNRMDFKGSDLCITSDEIFSLK-------------------SLPQ------ 169
+VV+ G PN + G + + F LK SLP
Sbjct: 116 KLVVAHGARPNTFNIPGVE-----ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEER 170
Query: 170 ----STLIIGGGYIAVEFAGILNSLGS--------------KTTLVTRGNSILSKFDSDI 211
+++GGG VEFA L K T++ G+ +L FD +
Sbjct: 171 KRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQAL 230
Query: 212 RQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIG 271
R+ + G+ + ++ V+ + +LK G+++ T V+ + G P
Sbjct: 231 RKYGQRRLRRLGVDIRTKTAVKEVLDKE----VVLKDGEVIPTGLVVWSTGVGPGPLTKQ 286
Query: 272 LEKVGVKMDENGFIITDCYSRT-NVQSIFSLGDIS 305
L+ V G I D + R + ++F+LGD +
Sbjct: 287 LK---VDKTSRGRISVDDHLRVKPIPNVFALGDCA 318
>gnl|CDD|183786 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 49.7 bits (119), Expect = 2e-06
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE--EYRVGGT 41
E+D++VIGAG++G+ +A AA G KV + E EY VGGT
Sbjct: 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY-VGGT 54
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH.
Length = 449
Score = 48.3 bits (115), Expect = 4e-06
Identities = 72/343 (20%), Positives = 119/343 (34%), Gaps = 103/343 (30%)
Query: 9 VIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQG 68
VIGAG +G+ A A+ G V + E G V G IP+
Sbjct: 138 VIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-IPE------------------ 178
Query: 69 FGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN 128
+ + + E+ L+ GV + +
Sbjct: 179 --FRLPKEIVVT---------EIKTLKKL--------GVTFRMNFLV------------G 207
Query: 129 RTIT-----SRY--IVVSTG-GSPNRMDFKGSDLCITSDEI-------------FSLKSL 167
+T T S+Y + + TG G P M+ G +LC F
Sbjct: 208 KTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADT 267
Query: 168 P----QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRG 223
P +S ++IGGG AV+ A LG++ + R ++ D R G
Sbjct: 268 PVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR----TREDMTARVEEIAHAEEEG 323
Query: 224 MQV-FHNDTIESVVSESGQLKSI----------LKSGK-----------IVKTDQVILAV 261
++ F +E + E G ++++ + SG+ ++ D VI+A+
Sbjct: 324 VKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAI 383
Query: 262 GRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304
G I E +K E G I+ D RT++ +F+ GDI
Sbjct: 384 GNGSNP--IMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424
Score = 27.5 bits (61), Expect = 8.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICEEYRVG 39
VVIG G++ V SAR A +LG +V YR
Sbjct: 276 VVIGGGNTAVDSARTALRLGAEVHCL--YRRT 305
>gnl|CDD|163170 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 47.3 bits (113), Expect = 9e-06
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 172 LIIGGGYIAVEFAGILNSLGSKTTL-----VTRGNSILSKFDSDIRQGLTDVMISRGMQV 226
++GGG VE A L K L + G S+L F + +R+ + ++ RG++V
Sbjct: 149 AVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEV 208
Query: 227 FHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFII 286
+ G L IL G+ + D ++ A G L + G+ +DE+GF+
Sbjct: 209 HEGAPVTRG--PDGAL--ILADGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLR 261
Query: 287 TDCYSRT-NVQSIFSLGDISGHIQLTP---VAIHA 317
D ++ + +F+ GD I P ++A
Sbjct: 262 VDPTLQSLSHPHVFAAGDC-AVITDAPRPKAGVYA 295
>gnl|CDD|181124 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 46.2 bits (110), Expect = 2e-05
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
R+ YD+VVIGAG +G+R+A A + G +VA+
Sbjct: 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAV 36
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 43.9 bits (104), Expect = 8e-05
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGT 41
E D++VIG+G++G+ +A AA G KV + E + GGT
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50
>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional.
Length = 321
Score = 42.7 bits (100), Expect = 2e-04
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 31/210 (14%)
Query: 132 TSRYIVVSTGGS------PNRMDFKGSDL--CITSDEIFSLKSLPQSTLIIGGGYIAVEF 183
T ++++TG S P+ FKG + C T D F Q +IGGG AVE
Sbjct: 105 TCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRN---QKVAVIGGGNTAVEE 161
Query: 184 AGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLK 243
A L+++ S+ L+ R + + + + + L D + + + + N T+E V + +
Sbjct: 162 ALYLSNIASEVHLIHRRDGF--RAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVT 219
Query: 244 SILKSGKIVKTDQV--------ILAVGRTPRTTGIGLEKVGVKMDENGFI-----ITDCY 290
++ +D + +A+G +P T G ENG+I I
Sbjct: 220 G-VRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE----GQLELENGYIKVQSGIHGNA 274
Query: 291 SRTNVQSIFSLGDISGHIQLTPVAIHAAAC 320
++T++ +F+ GD+ HI + C
Sbjct: 275 TQTSIPGVFAAGDVMDHIYRQAITSAGTGC 304
>gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates.
Length = 295
Score = 41.9 bits (99), Expect = 3e-04
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFY 55
YD+VV+GAG +G +A A G +V + E+ G + +++
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEE 51
>gnl|CDD|163151 TIGR03140, AhpF, alkyl hydroperoxide reductase, F subunit. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Length = 515
Score = 42.0 bits (99), Expect = 4e-04
Identities = 68/323 (21%), Positives = 127/323 (39%), Gaps = 70/323 (21%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE 64
YD++V+G G +G +A AA+ G + A+ E R+GG +
Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQV---------------------K 250
Query: 65 DSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIF----ASKGILSSPH 120
D+ G ++LI+ S+L + ++ +++ A K
Sbjct: 251 DTVGI-----------ENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL 299
Query: 121 SVYIANLNRTITSRYIVVSTG------GSPNRMDF--KGSDLCITSD-EIFSLKSLPQST 171
V + ++ ++V+TG G P ++ KG C D F K
Sbjct: 300 IVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKD----V 355
Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIR--QGLTDVMISR-GMQVFH 228
+IGGG +E A L + T++ +F +++ + L D + S + +
Sbjct: 356 AVIGGGNSGIEAAIDLAGIVRHVTVL--------EFADELKADKVLQDKLKSLPNVDILT 407
Query: 229 NDTIESVVSESGQLKSIL----KSGKIVKT--DQVILAVGRTPRTTGIGLEKVGVKMDEN 282
+ +V + ++ I SG+ + D V + +G P T K V+++
Sbjct: 408 SAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNT---EWLKDAVELNRR 464
Query: 283 GFIITDCYSRTNVQSIFSLGDIS 305
G I+ D RT+V IF+ GD++
Sbjct: 465 GEIVIDERGRTSVPGIFAAGDVT 487
Score = 30.8 bits (70), Expect = 0.68
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 36/132 (27%)
Query: 168 PQSTLIIGGG--------YIA-----------------VEFAGILNSLGSKTTLVTRGNS 202
P L++GGG Y A + GI N + T G+
Sbjct: 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYT---TGSQ 268
Query: 203 ILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262
+ + + I+Q D+M N + + +E G + L+SG+++K VI+A G
Sbjct: 269 LAANLEEHIKQYPIDLM--------ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATG 320
Query: 263 RTPRTTGIGLEK 274
R G+ EK
Sbjct: 321 ARWRKLGVPGEK 332
>gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 41.7 bits (99), Expect = 4e-04
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 248 SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTNVQSIFSLGD 303
S ++ D V+LA+G T G+ L + GV++DE G + + +T+ +F+ GD
Sbjct: 383 SEFVLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
>gnl|CDD|161671 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. The gene
is known as glf, ceoA, and rfbD. It is known
experimentally in E. coli, Mycobacterium tuberculosis,
and Klebsiella pneumoniae.
Length = 377
Score = 40.2 bits (94), Expect = 0.001
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTC 42
+D +++GAG SG+ A + AQL K+V + E+ +GG C
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 39.0 bits (91), Expect = 0.003
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 238 ESGQLKSILKSGKIVK--TDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSR-TN 294
SG+ + + +G+ V D VI AVG T L+K G+ +DE G+ + + + TN
Sbjct: 748 ASGRRRPV-GTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVNQATGETN 804
Query: 295 VQSIFSLGDISGHIQLTPVAIHAA 318
+ ++F +GD P I A
Sbjct: 805 ITNVFVIGD----ANRGPATIVEA 824
>gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 38.3 bits (90), Expect = 0.005
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
++D++VIG G +G+ +A AA+ GK+VA+
Sbjct: 2 KFDVLVIGGGLAGLTAALAAAEAGKRVAL 30
Score = 28.3 bits (64), Expect = 4.2
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 171 TLIIGGGYIAVEFAGILNSL-----GSKTTLVTRGNSILSKFDSDIRQGLTDVM 219
L+IGGG AG+ +L G + LV +G L F S G D++
Sbjct: 5 VLVIGGG-----LAGLTAALAAAEAGKRVALVAKGQGALH-FSS----GSIDLL 48
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 37.8 bits (88), Expect = 0.005
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGGT 41
D++V+GAG +G+ +A AA+ G +V + +E GG+
Sbjct: 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS 201
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 37.6 bits (88), Expect = 0.008
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---EYRVGG 40
M + D++V+GAG +G+ +A A GK+V + + E +GG
Sbjct: 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43
>gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 36.7 bits (85), Expect = 0.014
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40
M + YD+VV+G+G+ G+ +A AA G KV + E+ G
Sbjct: 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCG 44
>gnl|CDD|184008 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 502
Score = 36.5 bits (85), Expect = 0.014
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
YDL VIG G +G AR AA G KV +CE
Sbjct: 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCE 36
>gnl|CDD|185473 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 35.5 bits (82), Expect = 0.028
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVA 31
+ YD VV+GAG +G+R+A +LG K A
Sbjct: 28 HTYDAVVVGAGGAGLRAALGLVELGYKTA 56
>gnl|CDD|181289 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 35.4 bits (82), Expect = 0.030
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
++ YD+V++GAG +G+R+A A + A+
Sbjct: 2 QQHRYDVVIVGAGGAGMRAAIEAGP-RARTAV 32
>gnl|CDD|181641 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 35.3 bits (82), Expect = 0.032
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVA 31
++YD+VV+GAG +G+R+ A+ G K A
Sbjct: 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTA 39
>gnl|CDD|183734 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 35.4 bits (82), Expect = 0.032
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 251 IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304
+++ D V+ A+G P T E +G++++ G I+ D T+ + +F+ GD+
Sbjct: 272 VLEADTVVFAIGEIP-TPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDV 324
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 35.1 bits (81), Expect = 0.040
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
E+D VVIGAG +G+R+A +Q G+ A+
Sbjct: 7 EFDAVVIGAGGAGMRAALQISQSGQSCAL 35
>gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 35.0 bits (82), Expect = 0.041
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
M EYD++V+G G +G +A AA++G K +
Sbjct: 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLL 32
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 34.8 bits (80), Expect = 0.043
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
R ++D+V++GAG SG+R++ A+ G VA+
Sbjct: 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAV 40
>gnl|CDD|183296 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 34.8 bits (81), Expect = 0.048
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 245 ILKSGKIVKTDQVILAVGRTPR------TTGIGLEKVGVKMDENGFIITDCYSRTNVQSI 298
I S + D VI A+G+TP T G+ L + G I D RT++ +
Sbjct: 367 IEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWG------TIIADDETGRTSLPGV 420
Query: 299 FSLGDI 304
F+ GDI
Sbjct: 421 FAGGDI 426
>gnl|CDD|179368 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 34.8 bits (81), Expect = 0.049
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 1 MRYEYDLVVIGAGSSG-VRSARLAAQLGKKVAICE 34
EYD ++IGAGS+G V + RL+ V + E
Sbjct: 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLE 36
>gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine.This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis.
Length = 254
Score = 34.4 bits (79), Expect = 0.058
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
E D++++GAG SG+ +A A+ G KV + E
Sbjct: 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLE 51
>gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 34.4 bits (80), Expect = 0.069
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35
E D+ ++GAG SG+ +A A+ G KVA+ E
Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56
>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 34.1 bits (79), Expect = 0.078
Identities = 33/134 (24%), Positives = 46/134 (34%), Gaps = 30/134 (22%)
Query: 255 DQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSR-TNVQSIFSLGDISGHIQLTPV 313
D V+LA+G+ + G LE V G + D T +F+ GD+ +
Sbjct: 370 DLVVLAIGQDIDSAG--LESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTT 427
Query: 314 AI-H---AAAC--------------FVETVFKDNPTIPDYDLVPTAVFSKPEIASV---- 351
AI H AA E V D + + P A + +
Sbjct: 428 AIGHGKKAARNIDAFLGGEPYEHRPKREIVKFDKLNLWYFTDAPRAQRPELDADERVGDF 487
Query: 352 -----GLTEEEAVQ 360
GLTEEEA Q
Sbjct: 488 DEVLGGLTEEEARQ 501
>gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 33.8 bits (78), Expect = 0.099
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 4 EYDLVVIGAGSSGVRSA-RLAAQLGKKVAICE-EYRVGG 40
D+ V+GAG SG+ +A LA++ G V + E RVGG
Sbjct: 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 33.7 bits (78), Expect = 0.11
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYA 56
E D+VV+G G++G +A AA G +V + E GG + G + Y
Sbjct: 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGV-----IYL 68
>gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 33.5 bits (77), Expect = 0.11
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRG 46
D++VIG+G+ G+ +A A +LG V + E E GGT G
Sbjct: 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSG 52
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 33.6 bits (77), Expect = 0.12
Identities = 48/233 (20%), Positives = 105/233 (45%), Gaps = 22/233 (9%)
Query: 85 TAQNKELSRLESFYHNRLESAGVEIF---ASKGILSSPHSVYIANLNRTITSRYIVVSTG 141
TA+ L R E FY E G+++ + I ++ ++ RT+ ++++TG
Sbjct: 57 TAEELSLVR-EGFY----EKHGIKVLVGERAITINRQEKVIH-SSAGRTVFYDKLIMATG 110
Query: 142 GSPNRMDFKGSDL--CITSDEIFSLKSL------PQSTLIIGGGYIAVEFAGILNSLGSK 193
P KGS+ C I L ++ + ++GGG + +E AG L +LG +
Sbjct: 111 SYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVE 170
Query: 194 TTLVTRGNSILS-KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILK--SGK 250
T ++ +++ + D + L + S G++V + +V E + + ++ G
Sbjct: 171 THVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGS 230
Query: 251 IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGD 303
++ D ++ + G P+ + G+ + G I+ + +T+ I+++G+
Sbjct: 231 ELEVDFIVFSTGIRPQDKLA--TQCGLAVAPRGGIVINDSCQTSDPDIYAIGE 281
>gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 33.4 bits (77), Expect = 0.13
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 238 ESGQLKSILKSGKIV--KTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295
ESG+ + +++G+ V + D VI A+G T L+ G+ +D+ G+ + D T++
Sbjct: 751 ESGR-RRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKKGWPVVDANGETSL 807
Query: 296 QSIFSLGD 303
+++ +GD
Sbjct: 808 TNVYMIGD 815
Score = 30.7 bits (70), Expect = 0.74
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIP 49
VIGAG +G+ +A A+ G V + E E GG V++ IP
Sbjct: 543 AVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG--VVKNIIP 583
>gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 33.1 bits (76), Expect = 0.14
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGK-KVAIC 33
+YD+V++G+G +G+R+A AA+ K+++
Sbjct: 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVA 35
>gnl|CDD|183388 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.
Length = 508
Score = 33.2 bits (77), Expect = 0.16
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
YDL+VIG G +G AR AA G V +CE
Sbjct: 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCE 36
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 32.9 bits (75), Expect = 0.18
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40
++ +YD+V++GAG +G+ +A A G I E+ V G
Sbjct: 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG 97
>gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in Gram-negative
bacteria, mitochondria, and some Archaea. Mitochondrial
forms interact with ubiquinone and are designated EC
1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes
in E. coli and other species run primarily in the
opposite direction and are designated fumarate
reductase.
Length = 566
Score = 32.7 bits (75), Expect = 0.22
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAI 32
D+V++GAG +G+R+A AA+ G A+
Sbjct: 1 DVVIVGAGLAGLRAAVEAAKAGLNTAV 27
>gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae.
Length = 400
Score = 32.2 bits (74), Expect = 0.29
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICE 34
++IG G++G+ +A AA+ G V + E
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLE 27
>gnl|CDD|162990 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp.
strain PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria,
where myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed
to myxoxanthophyll.
Length = 492
Score = 32.0 bits (73), Expect = 0.34
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTC 42
+VVIGAG +G+ +A L A+ G +V + E++ G C
Sbjct: 4 VVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39
>gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 32.0 bits (73), Expect = 0.35
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 73/223 (32%)
Query: 136 IVVSTG-GSPNRMDFKGSDL--CITSDEIFSLKSL----------P----QSTLIIGGGY 178
I +++G G PN M+ G + ++S+E + +L P + ++GGG
Sbjct: 521 IFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGN 580
Query: 179 IAVEFAGILNSLGSKT-TLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFH--------- 228
A++ A LG++ T+V R + + M +R +V H
Sbjct: 581 TAMDSARTAKRLGAERVTIVYRRSE--------------EEMPARLEEVKHAKEEGIEFL 626
Query: 229 --NDTIESVVSESGQLKSIL----------KSGK-----------IVKTDQVILAVGRTP 265
++ IE + E G +K ++ SG+ V D VI++VG +P
Sbjct: 627 TLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSP 686
Query: 266 R----TTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304
++ GLE ++ G I+ D ++++ I++ GDI
Sbjct: 687 NPLVPSSIPGLE-----LNRKGTIVVDEEMQSSIPGIYAGGDI 724
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears
to be present in all complete eubacterial genomes so
far, as well as Saccharomyces cerevisiae. A subset of
these organisms have a closely related protein. GidA is
absent in the Archaea. It appears to act with MnmE, in
an alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34
in certain tRNAs. The shorter, related protein,
previously called gid or gidA(S), is now called TrmFO
(see model TIGR00137).
Length = 617
Score = 32.0 bits (73), Expect = 0.38
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKV 30
+D++VIG G +G +A AA++G K
Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKT 26
Score = 28.5 bits (64), Expect = 3.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVT 198
++IGGG+ E A +G+KT L+T
Sbjct: 4 IVIGGGHAGCEAALAAARMGAKTLLLT 30
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 31.9 bits (73), Expect = 0.39
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
YDL+++GAG G+ A AA+ G V + E
Sbjct: 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIE 30
>gnl|CDD|179461 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 459
Score = 31.8 bits (73), Expect = 0.39
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICEE 35
VIG G SG+ +ARL G +V + +
Sbjct: 4 HVIGLGRSGIAAARLLKAQGWEVVVSDR 31
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 31.8 bits (72), Expect = 0.43
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVA 31
+ YD VV+GAG +G+R+A ++ G A
Sbjct: 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTA 77
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 31.4 bits (71), Expect = 0.47
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
+ EYD VVIG G +G+ SA A G KVA+
Sbjct: 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAV 33
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 31.5 bits (72), Expect = 0.49
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 238 ESGQLKSILKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTN 294
SG+ + + G +++ D VI+++G +P I G+K+++ G I+ D + T+
Sbjct: 367 ASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL-ISSTTKGLKINKRGCIVADEETGLTS 425
Query: 295 VQSIFSLGDI 304
+ +F+ GD
Sbjct: 426 KEGVFAGGDA 435
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 31.3 bits (71), Expect = 0.50
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGN-----SILSKFDSDIRQGLTDVMISRGMQV 226
+IGGG A++ A LG T+V R + + + + +G+ ++ + R +
Sbjct: 451 FVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGI-NLAVLRAPRE 509
Query: 227 FHNDTIESVVS-------------ESGQLKSILKSGKI--VKTDQVILAVGRTPRTTGIG 271
F D V+ +SG+ +S +G+I V D VI+A+G T +
Sbjct: 510 FIGDDHTHFVTHALLDVNELGEPDKSGR-RSPKPTGEIERVPVDLVIMALGNTANPI-MK 567
Query: 272 LEKVGVKMDENGFIITDCYS-RTNVQSIFSLGDIS 305
+ G+K ++ G I + S RT+++ ++S GD +
Sbjct: 568 DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA 602
Score = 27.1 bits (60), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37
++ VIG G++ + +AR A +LG V I YR
Sbjct: 449 EVFVIGGGNTAMDAARTAKRLGGNVTIV--YR 478
>gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 31.2 bits (71), Expect = 0.54
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
EYD+VV+G+G++G+ +A AA G + E
Sbjct: 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVE 37
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 31.3 bits (71), Expect = 0.56
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
+YD+ V+G G G +A A+ G+ VA+ E
Sbjct: 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIE 33
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 30.9 bits (70), Expect = 0.63
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRG 46
YD+VV+G+G G+ +A AA G + I E+ +VGG+ + G
Sbjct: 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSG 49
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 30.9 bits (70), Expect = 0.75
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 248 SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS----IFSLGD 303
S ++ D VI+A G P L G+ +D G IIT S Q+ IF+ GD
Sbjct: 381 SEFVLPADVVIMAFGFQPHAMP-WLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGD 439
Query: 304 I 304
Sbjct: 440 A 440
>gnl|CDD|132421 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase.
Length = 419
Score = 30.8 bits (70), Expect = 0.81
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAI 32
+D+++IG G +G+ A A+ GKK AI
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAI 28
>gnl|CDD|178411 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 30.8 bits (70), Expect = 0.82
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAI---------CEEYRVGGTCVI 44
+D +VIG+G +G+R A A+ G VAI Y GG +
Sbjct: 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAV 77
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this
family, including sll0033 (crtH) of Synechocystis sp.
PCC 6803, catalyze a cis-trans isomerization of
carotenes to the all-trans lycopene, a reaction that
can also occur non-enzymatically in light through
photoisomerization.
Length = 493
Score = 30.5 bits (69), Expect = 0.87
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40
YD +VIG+G G+ +A A G KV + E Y + G
Sbjct: 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36
>gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 30.7 bits (70), Expect = 0.94
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
D+VV+GAG +G+ AR A G KV + E
Sbjct: 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIE 33
>gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ).
Length = 388
Score = 30.5 bits (69), Expect = 0.96
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
YD+ VIG G SG +A A+ G + + E
Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILLE 30
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 30.5 bits (69), Expect = 0.99
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVA 31
DLVV+G G +G+ A+ ++ G V
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSEAGLSVC 55
>gnl|CDD|185217 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 30.5 bits (70), Expect = 1.00
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40
YD++V+G G +G +A AA+ G + I E R GG
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAE-RFGG 246
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 29.9 bits (68), Expect = 1.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
++D+VV+G G G A AQ G +VA+
Sbjct: 5 KFDVVVVGGGLVGASLALALAQSGLRVALLA 35
>gnl|CDD|183509 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 30.0 bits (68), Expect = 1.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37
+ VIGAG +GV +A AQ G +V + + +R
Sbjct: 4 IAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34
Score = 28.5 bits (64), Expect = 3.6
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40
E+D VV+ AG V S LAA LG +V + Y V G
Sbjct: 244 TLEFDGVVVCAG---VGSRALAAMLGDRVNV---YPVKG 276
>gnl|CDD|181714 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 30.0 bits (68), Expect = 1.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 6 DLVVIGAGSSGVRSARLAAQ 25
DL +IGAG +G+R+A AA+
Sbjct: 6 DLAIIGAGGAGLRAAIAAAE 25
>gnl|CDD|183060 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 29.8 bits (68), Expect = 1.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--------GGTCVIR 45
YD++VIG GS G + A+ G +V + + G T +IR
Sbjct: 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIR 52
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 29.6 bits (67), Expect = 1.8
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 1 MRYEY-DLVVIGAGSSGVRSARLAAQLG 27
M+ Y D +VIGAG +G+R A AAQ G
Sbjct: 1 MKIIYTDALVIGAGLAGLRVAIAAAQRG 28
>gnl|CDD|162238 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate
reductase may be used interchangeably in certain
systems. However, a number of species have distinct
complexes, with the fumarate reductase active under
anaerobic conditions. This model represents the
fumarate reductase flavoprotein subunit from several
such species in which a distinct succinate
dehydrogenase is also found. Not all bona fide fumarate
reductases will be found by this model.
Length = 580
Score = 29.5 bits (66), Expect = 2.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQ 25
++D+ VIGAG +G+R+A AA+
Sbjct: 2 AQHDIAVIGAGGAGLRAAIAAAE 24
>gnl|CDD|184334 PRK13800, PRK13800, putative oxidoreductase/HEAT
repeat-containing protein; Provisional.
Length = 897
Score = 29.4 bits (66), Expect = 2.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38
+R + D++VIG G++G +A AA+ G V + E+ V
Sbjct: 10 LRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47
>gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 29.1 bits (66), Expect = 2.3
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE----EYRVGGTCVIRG--CI---PKKLMF 54
D++VIG G++ + +A A + G V + E E+R G + R C+ P+ ++
Sbjct: 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLV 63
Query: 55 YASQYSEYFED 65
A E+++D
Sbjct: 64 GAYPEEEFWQD 74
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 29.2 bits (65), Expect = 2.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGG 40
+V++GAG SG+ +AR + G KV + E R GG
Sbjct: 186 SVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form.
Sarcosine oxidase catalyzes the oxidative demethylation
of sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate.
The enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms.
Length = 380
Score = 29.0 bits (65), Expect = 2.3
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--------GGTCVIRGCIPKKLMFYA 56
+D++V+GAG G +A A+ GKK + E++ + G + +IR P+ FY
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPED--FYT 58
Query: 57 SQYSEYFE 64
E ++
Sbjct: 59 PMMLECYQ 66
>gnl|CDD|179093 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 29.0 bits (66), Expect = 2.4
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 213 QGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262
Q L + G++ N ++ ++ E G++ + G ++ D ++A+G
Sbjct: 205 QRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALG 254
>gnl|CDD|168735 PRK06932, PRK06932, glycerate dehydrogenase; Provisional.
Length = 314
Score = 29.0 bits (65), Expect = 2.5
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTC 42
L V G G G RLA LG KV + E++ C
Sbjct: 150 LGVFGKGCLGTEVGRLAQALGMKV-LYAEHKGASVC 184
>gnl|CDD|178516 PLN02928, PLN02928, oxidoreductase family protein.
Length = 347
Score = 28.9 bits (65), Expect = 2.7
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDT 231
I+G G I +E A L G K R + S+ GL N
Sbjct: 163 FILGYGAIGIELAKRLRPFGVKLLATRR------SWTSEPEDGLL----------IPNGD 206
Query: 232 IESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGI 270
++ +V E G + I + + D V+L T T GI
Sbjct: 207 VDDLVDEKGGHEDIYEFAG--EADIVVLCCTLTKETAGI 243
>gnl|CDD|163322 TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1.
The Pfam domain family pfam00296 is named for
luciferase-like monooxygenases, but the family also
contains several coenzyme F420-dependent enzymes. This
protein family represents a well-resolved clade within
family pfam00296 and shows no restriction to coenzyme
F420-positive species, unlike some other clades within
pfam00296.
Length = 323
Score = 29.0 bits (66), Expect = 2.7
Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 13 GSSGVRSARLAAQLG 27
GSS SA+LAA+LG
Sbjct: 165 GSSL-YSAQLAAELG 178
>gnl|CDD|171760 PRK12837, PRK12837, 3-ketosteroid-delta-1-dehydrogenase;
Provisional.
Length = 513
Score = 28.6 bits (64), Expect = 3.5
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRG 46
E D++V G+G GV A AA+ G VA+ E + GGT G
Sbjct: 7 EVDVLVAGSGG-GVAGAYTAAREGLSVALVEATDKFGGTTAYSG 49
>gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 28.6 bits (64), Expect = 3.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRG 46
E D++V+G+G G+ +A AA G + E+ GG+ + G
Sbjct: 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSG 54
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 28.3 bits (63), Expect = 3.9
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 7/36 (19%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGK----KVAICEE 35
+ D+V++GAGS+G+ A +L K KVAI E+
Sbjct: 92 DTDVVIVGAGSAGLSCAY---ELSKNPNVKVAIIEQ 124
>gnl|CDD|179428 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 447
Score = 28.3 bits (64), Expect = 4.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 9 VIGAGSSGVRSARLAAQLGKKVAI 32
V+G SG +A+L +LG V +
Sbjct: 10 VLGLAKSGYAAAKLLHKLGANVTV 33
>gnl|CDD|178300 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 28.2 bits (63), Expect = 4.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAI 32
DLVVIG G +G+ A +A+LG V +
Sbjct: 110 DLVVIGCGPAGLALAAESAKLGLNVGL 136
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 28.1 bits (63), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGG 40
+VIG G +G+ +AR KV + E R+GG
Sbjct: 4 IVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37
>gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 27.9 bits (63), Expect = 5.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 77 SFDWQSLITAQNKELSRLESFYHNRLESAG-----VEIFASKG 114
+W S+ T Q + R++ F H R+ AG V F ++G
Sbjct: 279 ELEWVSVYTFQCR---RMDRFRHGRVLFAGDAAHQVSPFGARG 318
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 27.7 bits (62), Expect = 5.8
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKK 29
YD+ +IG G +G + LA L K
Sbjct: 1 HYDVAIIGLGPAG---SALARLLAGK 23
>gnl|CDD|162325 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. Sarcosine oxidase catalyzes the
oxidative demethylation of sarcosine to glycine. The
reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 407
Score = 27.9 bits (62), Expect = 6.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 4 EYDLVVIGAGSSGVRSA-RLAAQLG-KKVAICEEYRVGG------TCVIR 45
YD++++G G G+ +A LA + G VA+ E+ +GG T ++R
Sbjct: 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVR 79
>gnl|CDD|177962 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 27.6 bits (61), Expect = 6.7
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGG 40
++VV+GAG +G+ +AR +G KV + E R GG
Sbjct: 240 NVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275
>gnl|CDD|177829 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 27.5 bits (61), Expect = 8.1
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGG 40
+ VIGAG++G+ +AR + G V + E E +VGG
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47
>gnl|CDD|185578 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 27.1 bits (60), Expect = 8.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
Y+YD++++G +G A+ ++ G+KV + E
Sbjct: 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLE 63
>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional.
Length = 265
Score = 27.3 bits (61), Expect = 8.8
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 8 VVIGAGSSGV--RSARLAAQLGKKVAIC 33
VV G GSSG+ + L + G VAIC
Sbjct: 12 VVTG-GSSGIGLATVELLLEAGASVAIC 38
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,252,457
Number of extensions: 460899
Number of successful extensions: 1301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 163
Length of query: 461
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,898,497
Effective search space: 1419052908
Effective search space used: 1419052908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)