RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >gnl|CDD|180410 PRK06116, PRK06116, glutathione reductase; Validated. Length = 450 Score = 635 bits (1640), Expect = 0.0 Identities = 192/452 (42%), Positives = 280/452 (61%), Gaps = 7/452 (1%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60 M +YDL+VIG GS G+ SA AA G KVA+ E R+GGTCV GC+PKKLM+Y +Q + Sbjct: 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIA 60 Query: 61 EYFED-SQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP 119 E F D + G+G+ V FDW LI ++ + RL Y N LE+ GV++ Sbjct: 61 EAFHDYAPGYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA 120 Query: 120 HSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYI 179 H+V + T+ +I+++TGG P+ D G++ ITSD F+L+ LP+ ++G GYI Sbjct: 121 HTVEVNG--ERYTADHILIATGGRPSIPDIPGAEYGITSDGFFALEELPKRVAVVGAGYI 178 Query: 180 AVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 AVEFAG+LN LGS+T L RG++ L FD DIR+ L + M +G+++ N ++V + Sbjct: 179 AVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA 238 Query: 240 -GQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSI 298 G L L+ G+ + D +I A+GR P T G+GLE GVK++E G+II D Y TNV I Sbjct: 239 DGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGI 298 Query: 299 FSLGDISGHIQLTPVAIHAAACFVETVFKDNP-TIPDYDLVPTAVFSKPEIASVGLTEEE 357 +++GD++G ++LTPVAI A E +F + P DY +PT VFS P I +VGLTEEE Sbjct: 299 YAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEE 358 Query: 358 AVQKF--CRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQV 415 A +++ +++Y++ F PM L+ + +MK++V KV+G+H +G A E+IQ Sbjct: 359 AREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQG 418 Query: 416 LGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 V +K G K DFD +A+HPT++EE VTM Sbjct: 419 FAVAIKMGATKADFDNTVAIHPTAAEEFVTMR 450 >gnl|CDD|162352 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. Length = 446 Score = 551 bits (1421), Expect = e-157 Identities = 213/446 (47%), Positives = 294/446 (65%), Gaps = 1/446 (0%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEY 62 ++YDL VIGAGS GVR+ARLAA G KVAI EE RVGGTCVIRGC+PKKLM Y S + Sbjct: 1 FDYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGE 60 Query: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV 122 FED+ G+GW+V FDW+ L+ ++ E++RL Y L +AGVE+ + L P++V Sbjct: 61 FEDAAGYGWTVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTV 120 Query: 123 YIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAVE 182 + T T++ I+++ GG P + + G +L ITS+E F L +LP+S LI+GGGYIAVE Sbjct: 121 EVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAFHLPTLPKSILILGGGYIAVE 180 Query: 183 FAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQL 242 FAGI LG + TL+ RG IL FD D+R L M RG+++ ++ S+ L Sbjct: 181 FAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGL 240 Query: 243 KSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLG 302 K L G+ + D V+ A GR+P T G+GLE GV++++ G I D YSRT++ SI+++G Sbjct: 241 KVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG 300 Query: 303 DISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKF 362 D++ I LTPVAI A CF T F +NPT D+DL+ TAVFS+P + +VGLTEEEA +KF Sbjct: 301 DVTDRINLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKF 360 Query: 363 C-RLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLK 421 + +Y+ F PMK S R E T+MK++V + KVLG H++G +A+EIIQ + + LK Sbjct: 361 TGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALK 420 Query: 422 AGCVKKDFDRCMAVHPTSSEELVTMY 447 G K DFD + +HP+S+EE VTM Sbjct: 421 MGATKADFDSTVGIHPSSAEEFVTMR 446 >gnl|CDD|178161 PLN02546, PLN02546, glutathione reductase. Length = 558 Score = 422 bits (1086), Expect = e-118 Identities = 199/461 (43%), Positives = 280/461 (60%), Gaps = 16/461 (3%) Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE----------EYRVGGTCVIRGCIPKK 51 Y++DL IGAGS GVR++R A+ G A+CE VGGTCV+RGC+PKK Sbjct: 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKK 136 Query: 52 LMFYASQYSEYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIF 110 L+ YAS+YS FE+S+GFGW + + DW +LI +N EL RL Y N L++AGV + Sbjct: 137 LLVYASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLI 196 Query: 111 ASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQS 170 +G + PH+V + + T+R I+++ GG P D G + I SD L S P+ Sbjct: 197 EGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALDLPSKPEK 254 Query: 171 TLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHND 230 I+GGGYIA+EFAGI N L S + R +L FD ++R + + M RG++ FH + Sbjct: 255 IAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIE-FHTE 313 Query: 231 TIESVVSESGQLKSILKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITD 288 + +S LK+ K + V+ A GR P T +GLE+VGVKMD+NG I D Sbjct: 314 ESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD 373 Query: 289 CYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEI 348 YSRT+V SI+++GD++ I LTPVA+ +T+F + PT PDY VP+AVFS+P I Sbjct: 374 EYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPI 433 Query: 349 ASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHE 408 VGLTEE+A++++ ++++ F P+K LS + MK+IV A +KVLGVH+ G + Sbjct: 434 GQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGED 493 Query: 409 ASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449 A EIIQ V +KAG K DFD + +HPT++EE VTM P Sbjct: 494 APEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTP 534 >gnl|CDD|178123 PLN02507, PLN02507, glutathione reductase. Length = 499 Score = 403 bits (1038), Expect = e-113 Identities = 187/459 (40%), Positives = 275/459 (59%), Gaps = 15/459 (3%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE----------EYRVGGTCVIRGCIPKKL 52 Y++DL VIGAGS GVR+AR +A G KV ICE VGGTCVIRGC+PKK+ Sbjct: 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKI 83 Query: 53 MFYASQYSEYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFA 111 + Y + + FED++ +GW ++ K F+W+ L+ + E+ RL Y L +AGV+++ Sbjct: 84 LVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYE 143 Query: 112 SKGILSSPHSVYIANLNRTI---TSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLP 168 +G + P+ V + L+ T T+++I+++TG R + G +L ITSDE SL+ LP Sbjct: 144 GEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITSDEALSLEELP 203 Query: 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFH 228 + +++GGGYIAVEFA I +G+ L R L FD ++R + + RG+ + Sbjct: 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHP 263 Query: 229 NDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITD 288 + + G +K I G+ D V+ A GR P T + LE VGV++D+ G + D Sbjct: 264 RTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD 323 Query: 289 CYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEI 348 YSRTN+ SI+++GD++ I LTPVA+ CF +TVF PT PDY+ V AVF P + Sbjct: 324 EYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPL 383 Query: 349 ASVGLTEEEAV-QKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGH 407 + VGL+EEEAV Q + ++ + F PMK +S R E T+MK+IV A+ KVLG + G Sbjct: 384 SVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGP 443 Query: 408 EASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 +A EI+Q + V LK G K FD + +HP+++EE VTM Sbjct: 444 DAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTM 482 >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. Length = 450 Score = 388 bits (998), Expect = e-108 Identities = 176/450 (39%), Positives = 262/450 (58%), Gaps = 9/450 (2%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63 YD +VIG GS G+ SAR AA+ G K + E ++GGTCV GC+PKK+M+YAS +E Sbjct: 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERM 61 Query: 64 EDSQGFGWSV-DHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV 122 D+ +G+ +F+W L ++ + RL Y LE V++ + +V Sbjct: 62 HDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTV 121 Query: 123 YIANLNRTITSRYIVVSTGGSPNRMD-FKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAV 181 + R T+ +I+++TGG P+ + G++L SD F+L+ LP+ +I+G GYIAV Sbjct: 122 EVNG--RDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEELPKRVVIVGAGYIAV 179 Query: 182 EFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV-VSESG 240 E AG+L+ LGS+T LV R +L FDS I + +T+ G+ V V + G Sbjct: 180 ELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEG 239 Query: 241 QLKSILKSGK-IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299 +L + GK I D++I A+GR P T G+GLE VG+K++E G II D Y TNV I+ Sbjct: 240 KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIY 299 Query: 300 SLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-DYDLVPTAVFSKPEIASVGLTEEEA 358 +LGD+ G ++LTPVAI A E +F DY+ VPT VFS P I ++GLTE+EA Sbjct: 300 ALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEA 359 Query: 359 VQKFCR--LEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVL 416 ++K+ + +++Y + F PM ++ + MK++ KV+G+H +G E++Q Sbjct: 360 IEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGF 419 Query: 417 GVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 V +K G K DFD +A+HPTSSEELVTM Sbjct: 420 AVAIKMGATKADFDNTVAIHPTSSEELVTM 449 >gnl|CDD|130490 TIGR01423, trypano_reduc, trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 Score = 353 bits (907), Expect = 5e-98 Identities = 183/479 (38%), Positives = 277/479 (57%), Gaps = 25/479 (5%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKK-VAICEEYRV---------GGTCVIRGCIPKKLMF 54 +DLVVIGAGS G+ + AA L KK VA+ + GGTCV GC+PKKLM Sbjct: 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMV 63 Query: 55 YASQYSEYFEDSQGFGWSVDHKSF--DWQSLITAQNKELSRLESFYHNRL-ESAGVEIFA 111 +QY + +S GFGW D S +W++LI A+NK + + Y ++ G+ F Sbjct: 64 TGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFL 123 Query: 112 SKGILSSPHSVYI-------ANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSL 164 G L + V + + + + + +I+++TG P + G + CI+S+E F L Sbjct: 124 GWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQMLGIPGIEHCISSNEAFYL 183 Query: 165 KSLPQSTLIIGGGYIAVEFAGILNS---LGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS 221 P+ L +GGG+I+VEFAGI N+ G K TL R N IL FDS +R+ LT + + Sbjct: 184 DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRA 243 Query: 222 RGMQVFHNDTIESV-VSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMD 280 G+ + N+ V ++ G +SGK + D V++A+GR PRT + L+KVGV++ Sbjct: 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT 303 Query: 281 ENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPT 340 + G I D +SRTNV +I+++GD++ + LTPVAI+ A FV+TVF + P D+ V + Sbjct: 304 KKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVAS 363 Query: 341 AVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLS-KRFEHTIMKIIVHADNHKV 399 AVFS P I + GL EE+A +KF ++ +Y++ F P+ +S +++ + KI+ + + V Sbjct: 364 AVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTV 423 Query: 400 LGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIK 458 LGVH+LG + EIIQ +G+CLK DF + VHPTS+EEL +M P Y + G K Sbjct: 424 LGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYQKGEK 482 >gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 461 Score = 313 bits (803), Expect = 9e-86 Identities = 146/448 (32%), Positives = 242/448 (54%), Gaps = 13/448 (2%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63 YD+VVIG G G +A AAQLG KVA+ E+ +GGTC+ GCIP K + ++++ + Sbjct: 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEI 60 Query: 64 EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVY 123 + ++ +G V++ S DW+ + +NK + +L L+ V + + P +V Sbjct: 61 KHAKDYGIEVENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVL 120 Query: 124 IANLN--RTITSRYIVVSTGGSPNRMDFK---GSDLCITSDEIFSLKSLPQSTLIIGGGY 178 + N T+T++ I+++TG P + ++ ITS +LK +P+S +IIGGG Sbjct: 121 VTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVITSTGALNLKEVPESLVIIGGGV 180 Query: 179 IAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 I +EFA I SLGSK T++ + IL D+++ + + + +G+++ N + +V Sbjct: 181 IGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKN 240 Query: 239 SGQLKSILKSGKIVKT---DQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295 Q+ G +T ++V++AVGR P T G+GLE +GV++DE G I+ D Y RTNV Sbjct: 241 DDQVV-YENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNV 299 Query: 296 QSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTE 355 I+++GD+ G L VA H E + P DYD VP+ +++ PE+ASVGLTE Sbjct: 300 PGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTE 359 Query: 356 EEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTI--MKIIVHADNHKVLGVHILGHEASEII 413 E+A + ++ KF + T +KII ++LG HI+G A+E+I Sbjct: 360 EQAKEA--GYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELI 417 Query: 414 QVLGVCLKAGCVKKDFDRCMAVHPTSSE 441 + ++ ++ + + HPT SE Sbjct: 418 SEAVLAMELELTVEELAKTIHPHPTLSE 445 >gnl|CDD|162359 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 Score = 311 bits (797), Expect = 3e-85 Identities = 154/475 (32%), Positives = 239/475 (50%), Gaps = 37/475 (7%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKLM 53 Y+YDL+VIG GS G+ +A+ AA G KV + + + +GGTCV GCIPKKLM Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60 Query: 54 FYASQYSEYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFAS 112 A+ + +DS+ +GW+V+ DW L A + L Y L V + Sbjct: 61 HQAALLGQALKDSRNYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA 120 Query: 113 KGILSSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGS-DLCITSDEIFSLKSLP 168 H + N + ++ +++TG P G+ +LCITSD++FSL P Sbjct: 121 YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKELCITSDDLFSLPYCP 180 Query: 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGL------TDVMIS 221 TL++G Y+A+E AG L +G T++ R SIL + FD D + V Sbjct: 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR--SILLRGFDQDCANKVGEHMEEHGVKFK 238 Query: 222 RGMQVFHNDTIES--VVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKM 279 R + IE+ V+ + I + + D V+LA+GR T + LE VGVK+ Sbjct: 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEE-----EYDTVLLAIGRDACTRKLNLENVGVKI 293 Query: 280 DE-NGFIITDCYSRTNVQSIFSLGDI-SGHIQLTPVAIHAAACFVETVFKDNPTIPDYDL 337 ++ G I D +TNV I+++GDI +LTPVAI A + +F + I DY+ Sbjct: 294 NKKTGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYEN 353 Query: 338 VPTAVFSKPEIASVGLTEEEAVQKFCR--LEIYKTKFFPMKCFLSKRFEHT--IMKIIVH 393 VPT VF+ E + GL+EE+AV+KF +E++ + F+P++ + R K + + Sbjct: 354 VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCN 413 Query: 394 A-DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 +N +V+G H++G A E+ Q L+ G KKD D + +HP +E T+ Sbjct: 414 RKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLS 468 >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional. Length = 561 Score = 306 bits (784), Expect = 1e-83 Identities = 158/514 (30%), Positives = 251/514 (48%), Gaps = 72/514 (14%) Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSE 61 R YDL+VIG GS G+ +AR AA+ KVA+ E+ +GGTCV GC+PKK+MF A+ + Sbjct: 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHD 105 Query: 62 YFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHS 121 E+S+ +G+ SF+ L+ ++K + RL Y L+ VE F KG L S + Sbjct: 106 ILENSRHYGFDTQ-FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQ 164 Query: 122 VYIANLN---------------------------RTITSRYIVVSTGGSPNRMDFKGSDL 154 V I ++ + I + I+++ G P D KG + Sbjct: 165 VLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPDVKGKEF 224 Query: 155 CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQG 214 I+SD+ F +K + I G GYIAVE ++N LG+++ + RGN +L KFD I Sbjct: 225 TISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINE 283 Query: 215 LTDVMISRGMQVFHNDTIESV--VSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGL 272 L + M + + + +E + V E + K D VI VGR+P T + L Sbjct: 284 LENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL 343 Query: 273 EKVGVKMDENGFIITDCYSRTNVQSIFSLGDISG-------------------------- 306 + + +K G+I D RT+V+ I+++GD Sbjct: 344 KALNIKT-PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKE 402 Query: 307 --------HIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEA 358 ++QLTPVAI+A + +F +Y L+P+ +FS P I ++GL+E+EA Sbjct: 403 NTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEA 462 Query: 359 VQKFCR--LEIYKTKF----FPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEI 412 + + + ++IY+++F F + + E T +K++ + G+HI+G A EI Sbjct: 463 IDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGLNADEI 522 Query: 413 IQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 +Q V LK K DFD + +HPT++EE VTM Sbjct: 523 LQGFAVALKMNATKADFDETIPIHPTAAEEFVTM 556 >gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated. Length = 460 Score = 291 bits (747), Expect = 3e-79 Identities = 142/460 (30%), Positives = 223/460 (48%), Gaps = 40/460 (8%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63 +YD++VIGAG +G +AR AA+LGKKVA+ E+ +GGTC+ GCIP K + A++ Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEA 62 Query: 64 EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLES-AGVEIFASKGILSSPHSV 122 + ++ FG D D++ ++ +E R LE ++ P++V Sbjct: 63 KHAEEFGIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTV 122 Query: 123 YIANLNRTITSRYIVVSTGGS----PNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGY 178 + I ++ IV++TG P G L +TSD+ F L LP+S +IGGG Sbjct: 123 EVN--GERIEAKNIVIATGSRVPPIPGVWLILGDRL-LTSDDAFELDKLPKSLAVIGGGV 179 Query: 179 IAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV-VS 237 I +E L+ LG K T+ RG+ IL D ++ + ++ S+ ++ + SV S Sbjct: 180 IGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKIL-SKEFKIKLGAKVTSVEKS 238 Query: 238 ESGQLKSILKSGKIVK--TDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295 +++ + K GK D V++A GR P T G+GLE G+++DE G + D +++T+V Sbjct: 239 GDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSV 298 Query: 296 QSIFSLGDISGHIQLTPVAIH---AAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVG 352 I++ GD++G L A AA E D Y +P+ VF+ P+IASVG Sbjct: 299 PGIYAAGDVNGKPPLLHEAADEGRIAA---ENAAGDVAGGVRYHPIPSVVFTDPQIASVG 355 Query: 353 LTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT-----------IMKIIVHADNHKVLG 401 LTEEE Y P FE +K+ ++LG Sbjct: 356 LTEEELKAAG---IDYVVGEVP--------FEAQGRARVMGKNDGFVKVYADKKTGRLLG 404 Query: 402 VHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSE 441 HI+G +A +I +L ++ G +D R HPT SE Sbjct: 405 AHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSE 444 >gnl|CDD|180558 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed. Length = 462 Score = 288 bits (740), Expect = 2e-78 Identities = 152/451 (33%), Positives = 240/451 (53%), Gaps = 17/451 (3%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63 EYD++VIGAG G +A AAQLG KVAI E+ ++GGTC+ RGCIP K + +A++ ++ Sbjct: 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEA 63 Query: 64 EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVY 123 S+ FG ++ D++ + +N ++RL L+ V+I + L P++V Sbjct: 64 RHSEDFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVR 123 Query: 124 IANLN--RTITSRYIVVSTGGSPNR---MDFKGSDLCITSDEIFSLKSLPQSTLIIGGGY 178 + + +T T++ I+++TG P ++ G + TSDE +L +P+S ++IGGGY Sbjct: 124 VMTEDGEQTYTAKNIILATGSRPRELPGIEIDG-RVIWTSDEALNLDEVPKSLVVIGGGY 182 Query: 179 IAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 I VEFA SLG++ T+V IL D +I + + RG+++ + V Sbjct: 183 IGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQT 242 Query: 239 SGQLKSILKSGKIVKT---DQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295 + L+ G +T D V++AVGR P T +GLE++GVK D GFI D RTNV Sbjct: 243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNV 301 Query: 296 QSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTE 355 +I+++GDI G L A E + NP DY +P ++ PE+ASVGLTE Sbjct: 302 PNIYAIGDIVGGPMLAHKASAEGIIAAEAI-AGNPHPIDYRGIPAVTYTHPEVASVGLTE 360 Query: 356 EEAVQKFCRLEIYKTKFFPMK---CFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEI 412 +A ++ +++ K FP L+ +K+I + +VLG H++G ASE+ Sbjct: 361 AKAKEEGFDVKVVK---FPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASEL 417 Query: 413 IQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 IQ + + +D + HPT SE L Sbjct: 418 IQEAQLAINWEATPEDLALTIHPHPTLSEAL 448 >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional. Length = 499 Score = 278 bits (712), Expect = 2e-75 Identities = 160/474 (33%), Positives = 241/474 (50%), Gaps = 40/474 (8%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKLM 53 + YDLVVIG GS G+ +A+ AA GKKVA+ + ++ +GGTCV GC+PKKLM Sbjct: 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLM 63 Query: 54 FYASQYSEYFE-DSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFAS 112 YA+ F DSQ +GW SF+W L+T + L Y L S+ VE Sbjct: 64 HYAANIGSIFHHDSQMYGWKTS-SSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING 122 Query: 113 KGILSSPHSVYIANLNR--TITSRYIVVSTGGSPN-RMDFKGS-DLCITSDEIFSLKSLP 168 L H+V + ++ TIT++YI+++TGG P+ D G+ + ITSD+IFSL P Sbjct: 123 LAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSITSDDIFSLSKDP 182 Query: 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFH 228 TLI+G YI +E AG LN LG T+ R + L FD + + + M +G Sbjct: 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLE 241 Query: 229 NDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFII-- 286 ++ ++K + G D V+ A GR P G+ L +GV ++++ II Sbjct: 242 GVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAP 301 Query: 287 TDCYSRTNVQSIFSLGDIS-GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSK 345 DC TN+ +IF++GD+ G +LTPVAI A +FK + DY +PT +F+ Sbjct: 302 NDC---TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTP 358 Query: 346 PEIASVGLTEEEAVQKFCR--LEIYKTKFFPMKCFLSKRFEHTIMK-------------- 389 E + G + E A+ K+ +E Y +F ++ R +H + Sbjct: 359 IEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLA 418 Query: 390 --IIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSE 441 + V ++++KV+G H +G A EI Q + LK G K DFD + +HPT +E Sbjct: 419 KLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAE 472 >gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated. Length = 463 Score = 270 bits (693), Expect = 5e-73 Identities = 136/463 (29%), Positives = 219/463 (47%), Gaps = 20/463 (4%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60 YD +VIGAG +G A AA LG KVA+ E +GGTCV GC+P K + +++ + Sbjct: 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAA 61 Query: 61 EYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLES-AGVEIFASKGILSS 118 + +G SV S D+++++ + + +R L GV++F S Sbjct: 62 HLARRAAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES 121 Query: 119 PHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLC--ITSDEIFSLKSLPQSTLIIGG 176 P++V + T+ ++ I ++TG G D +T++ IFSL LP+ +IIGG Sbjct: 122 PNTVRVGG--ETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETIFSLDELPEHLVIIGG 179 Query: 177 GYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVV 236 GYI +EFA + GS+ T++ RG +L + D D+ + +++ G+ V N V Sbjct: 180 GYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVE 239 Query: 237 SESGQLKSILKS---GKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT 293 + + L + +++AVGR P T +GLE GV+ D G+I D RT Sbjct: 240 RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT 299 Query: 294 NVQSIFSLGDISGHIQLTPVAIHAAACFVE-TVFKDNPTIPDYDLVPTAVFSKPEIASVG 352 I++ GD +G T A + A + + D +VP A ++ P +A VG Sbjct: 300 TNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDR-IVPYATYTDPPLARVG 358 Query: 353 LTEEEAVQKFCRLEIYKTKFFPMKCF---LSKRFEHTIMKIIVHADNHKVLGVHILGHEA 409 +TE EA + R+ + PM + K MK++V AD ++LG ILG Sbjct: 359 MTEAEARKSGRRVLVGTR---PMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHG 415 Query: 410 SEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM---YNP 449 E+I + + AG R + +HPT SE + T+ Sbjct: 416 DEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALRR 458 >gnl|CDD|162675 TIGR02053, MerA, mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. Length = 463 Score = 259 bits (663), Expect = 1e-69 Identities = 134/449 (29%), Positives = 216/449 (48%), Gaps = 15/449 (3%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE 64 YDLV+IG+G++ +A AA+LG VA+ E +GGTCV GC+P K++ A++ + Y Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYAR 60 Query: 65 DSQGFGWSVDHKSFDWQSLITAQNKELSRL-ESFYHNRLESAGVEIFASKGILSSPHSVY 123 FG + D+ L+ + + + L Y + L S GV+ + P +V Sbjct: 61 KPP-FGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVK 119 Query: 124 IANLNRTITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTLIIGGGYIAV 181 + ++ +++TG P G +TS+E +L +P+S +IGGG I V Sbjct: 120 VDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIPESLAVIGGGAIGV 179 Query: 182 EFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQ 241 E A LGS+ T++ R + +L + + +I + + + G++V VS G Sbjct: 180 ELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEV-VTSAQVKAVSVRGG 238 Query: 242 LKSI----LKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297 K I V+ D++++A GR P T G+GLEK GVK+DE G I+ D RT+ Sbjct: 239 GKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPG 298 Query: 298 IFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEE 357 I++ GD++G +QL VA E D ++P VF+ P +ASVGLTE E Sbjct: 299 IYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAE 358 Query: 358 AVQKFCRLEIYKTKFFPMKCF---LSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQ 414 A + + P+ R +K++ KVLGV ++ EA+E+I Sbjct: 359 AQKA---GIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVIN 415 Query: 415 VLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 + ++AG D + PT +E L Sbjct: 416 EAALAIRAGMTVDDLIDTLHPFPTMAEGL 444 >gnl|CDD|180333 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated. Length = 472 Score = 250 bits (642), Expect = 4e-67 Identities = 144/462 (31%), Positives = 234/462 (50%), Gaps = 27/462 (5%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKK-LMFYASQY 59 M EYDLV+IG G G +A A QLG K A+ E+ ++GGTC+ +GCIP K L+ A + Sbjct: 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVF 60 Query: 60 SEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKG-IL-- 116 + S FG SV + D+ + ++ + RL L+ +++F G IL Sbjct: 61 QTAKKASP-FGISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGP 119 Query: 117 --SSPH----SVYIAN-LNRTITSRYIVVSTGGSPNR---MDFKGSDLCITSDEIFSLKS 166 SP SV N I ++++TG P + F G + I+SDE SL++ Sbjct: 120 SIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYV-ISSDEALSLET 178 Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226 LP+S +I+GGG I +E+A +L G + T+V + IL D+++ + + ++ G++V Sbjct: 179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRV 238 Query: 227 FHNDTI--ESVVSESGQLKSILKSGKI--VKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282 + ++ + G L +G+ ++ D+V+++VGR P T GIGLE + + E Sbjct: 239 VTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EG 297 Query: 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAV 342 GFI D + +T + I+++GD+ G QL VA+ E + P DY +P Sbjct: 298 GFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACC 357 Query: 343 FSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCF---LSKRFEHTIMKIIVHADNHKV 399 ++ PE+ASVGLTEEEA + ++ K FP L+ +K++ D H + Sbjct: 358 YTDPEVASVGLTEEEAKEAG--YDV-KVGKFPFAANGKALTYGESDGFVKVVADRDTHDI 414 Query: 400 LGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSE 441 LGV +G +E+I + L+ G + + HPT SE Sbjct: 415 LGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSE 456 >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed. Length = 451 Score = 244 bits (626), Expect = 3e-65 Identities = 127/431 (29%), Positives = 204/431 (47%), Gaps = 35/431 (8%) Query: 4 EYDLVVIGAGS-SGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEY 62 YDL++IG GS + + R A K++AI E+ GGTC+ GCIP K+ YA+ + Sbjct: 1 HYDLIIIGTGSGNSILDERFA---DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVART 57 Query: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESF------YHNRLESAGVEIFASKGIL 116 ++ G + W + ++ R++ Y R ++ ++++ Sbjct: 58 IREAARLGVDAELDGVRWPDI---VSRVFGRIDPIAAGGEEYRGR-DTPNIDVYRGHARF 113 Query: 117 SSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCI--TSDEIFSLKSLPQSTLII 174 P ++ IT+ +V++ G P TSD I L LP+S +I+ Sbjct: 114 IGPKTLRTG-DGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELPESLVIV 172 Query: 175 GGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIES 234 GGG+IA EFA + ++LG + T+V R +L D DI + T++ R V + Sbjct: 173 GGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKR-WDVRLGRNVVG 231 Query: 235 VVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTN 294 V + + L G V+ D +++A GR P + GV +DE+G ++ D Y RT+ Sbjct: 232 VSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTS 291 Query: 295 VQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-DYDLVPTAVFSKPEIASVGL 353 + +F+LGD+S QL VA H A + + I D+ VP AVF+ P+IASVGL Sbjct: 292 AEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGL 351 Query: 354 TEEEAVQKFCRLEIYKTKF------FPMKCFLSKRFEHT--IMKIIVHADNHKVLGVHIL 405 TE EA + + + + M E T +K+I D ++LG HI+ Sbjct: 352 TENEARAAGLDITVKVQNYGDVAYGWAM--------EDTTGFVKLIADRDTGRLLGAHII 403 Query: 406 GHEASEIIQVL 416 G +AS +IQ L Sbjct: 404 GPQASTLIQPL 414 >gnl|CDD|179973 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional. Length = 461 Score = 231 bits (592), Expect = 3e-61 Identities = 138/438 (31%), Positives = 211/438 (48%), Gaps = 49/438 (11%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYA-SQYS 60 Y+YDLVVIG+G +G +A AA+LGK+VA+ E YR VGG C G IP K + A + Sbjct: 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLI 63 Query: 61 EYFEDSQGFGWSV-DHKSFDWQSLITAQ---NKELSRLESFY-HNRLESAGVEIFASKGI 115 + ++ + V +F L A NK++ Y NR V++ + Sbjct: 64 GFNQNPLYSSYRVKLRITFA-DLLARADHVINKQVEVRRGQYERNR-----VDLIQGRAR 117 Query: 116 LSSPHSVYIANLN---RTITSRYIVVSTGGSPNR---MDFKGSDLCITSDEIFSLKSLPQ 169 PH+V + + T+T+ IV++TG P R +DF + SD I SL LP+ Sbjct: 118 FVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRI-YDSDSILSLDHLPR 176 Query: 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHN 229 S +I G G I E+A I +LG K TL+ + +LS D +I L+ + G+ + HN Sbjct: 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHN 236 Query: 230 DTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDC 289 + +E V + LKSGK +K D ++ A GRT T G+ LE G++ D G + + Sbjct: 237 EEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE 296 Query: 290 YSRTNVQSIFSLGDISGHIQLTPVAI---HAAACFVETVFKDNPTIPDYDLVPTAVFSKP 346 +T V I+++GD+ G L ++ AA T + +PT +++ P Sbjct: 297 NYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHA----VGEATAHLIEDIPTGIYTIP 352 Query: 347 EIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT----IM-------KIIVHAD 395 EI+SVG TE+E P + + RF+ I KI+ H + Sbjct: 353 EISSVGKTEQEL----------TAAKVPYEVGRA-RFKELARAQIAGDNVGMLKILFHRE 401 Query: 396 NHKVLGVHILGHEASEII 413 ++LGVH G A+EII Sbjct: 402 TLEILGVHCFGERATEII 419 >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 Score = 219 bits (559), Expect = 1e-57 Identities = 131/453 (28%), Positives = 217/453 (47%), Gaps = 28/453 (6%) Query: 5 YDLVVIGAGS-SGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF 63 YDL++IG GS + + R A K++AI E+ GGTC+ GCIP K+ YA++ ++ Sbjct: 3 YDLIIIGTGSGNSIPDPRFA---DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSI 59 Query: 64 EDSQGFGWSVDHKSFDWQSLIT----------AQNKELSRLESFYHNRLESAGVEIFASK 113 +S G + S W +++ A E R N ++++ Sbjct: 60 GESARLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPN------IDVYDGH 113 Query: 114 GILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCI---TSDEIFSLKSLPQS 170 P ++ + IT IV++ G P + +D + T+++I L LP+S Sbjct: 114 ARFVGPRTLRTGD-GEEITGDQIVIAAGSRP-YIPPAIADSGVRYHTNEDIMRLPELPES 171 Query: 171 TLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHND 230 +I+GGGYIA EFA + ++LG++ T+V R +L D DI T++ + + Sbjct: 172 LVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKK-WDIRLGR 230 Query: 231 TIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCY 290 + +V + + L G V D +++A GR P + E GV++DE+G I D Y Sbjct: 231 NVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEY 290 Query: 291 SRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-DYDLVPTAVFSKPEIA 349 RT+ + +++LGD+S QL VA A + N +D VP+AVF+ P+IA Sbjct: 291 GRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIA 350 Query: 350 SVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEA 409 +VGLTE+EA + + + + + + K+I D K+LG HI+G +A Sbjct: 351 TVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQA 410 Query: 410 SEIIQVLGVCLKAGCVKKDFDRCMA-VHPTSSE 441 S +IQ L + G ++ R +HP E Sbjct: 411 SSLIQPLITAMAFGLDAREMARKQYWIHPALPE 443 >gnl|CDD|180529 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated. Length = 475 Score = 214 bits (547), Expect = 4e-56 Identities = 128/468 (27%), Positives = 215/468 (45%), Gaps = 36/468 (7%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-------RVGGTCVIRGCIPKKLM 53 M ++D+VVIGAG G +A AAQLG KVA E + +GGTC+ GCIP K + Sbjct: 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKAL 60 Query: 54 FYASQYSEYFEDSQ----GFGWSVDHKSFDWQSLITAQNKELSRLES-----FYHNRLES 104 SE FE++ G VD D +I ++K + ++ F N++ Sbjct: 61 L---ASSEEFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITV 117 Query: 105 -AGVEIFASKGILSSPHSVYIAN-LNRTITSRYIVVSTGGSPNRMDFK--GSDLCITSDE 160 G F K + + + + IT+++++++TG P + + + + + Sbjct: 118 LKGRGSFVGKT--DAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTG 175 Query: 161 IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI 220 + +P+ +IG G I +E + LG++ T++ + L+ D + + Sbjct: 176 ALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFT 235 Query: 221 SRGMQVFHNDTIESV-VSESG---QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVG 276 +G+ + I + G + ++ D++I+++GR P T G+GLE VG Sbjct: 236 KQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVG 295 Query: 277 VKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYD 336 +K+DE GFI D + RTNV +++++GD+ L A E + I DY+ Sbjct: 296 LKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHI-DYN 354 Query: 337 LVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKR--FEHTIM-KIIVH 393 +P +++ PEIA VG TE++ + YK FP E KII Sbjct: 355 TIPWVIYTSPEIAWVGKTEQQLKAEGVE---YKAGKFPFMANGRALAMGEPDGFVKIIAD 411 Query: 394 ADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSE 441 A ++LGVH++G ASE+I V ++ +D R HPT SE Sbjct: 412 AKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSE 459 >gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 277 Score = 197 bits (503), Expect = 4e-51 Identities = 90/304 (29%), Positives = 154/304 (50%), Gaps = 37/304 (12%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFED 65 D+V+IG G +G+ +A A+LG KVA+ E + GGTC RGCIPKKL+ A++ + Sbjct: 1 DVVIIGGGPAGLAAAIYLARLGLKVALIE--KEGGTCYNRGCIPKKLLLEAAEVGK---- 54 Query: 66 SQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIA 125 D + L +++ + L GV I + V + Sbjct: 55 ------------LDLRPLEQYKDEGI--------EVLLGTGVT-----AIDKAGKKVTLD 89 Query: 126 NLNRTITSRYIVVSTGGSPNRMDFKGSDLC----ITSDEIFSLKSLPQSTL-IIGGGYIA 180 + + +T +V++TG P R G +L +TSD+ +L+ P+ + ++GGGYI Sbjct: 90 D-GKELTYDKLVIATGARPRRPPIPGVELDGVFYLTSDDALALREKPKKRVVVVGGGYIG 148 Query: 181 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG 240 +E A L LG++ T+V R + +L++ D +IR L + + G + +E VV Sbjct: 149 LELAAALAKLGAEVTVVERRDRLLARADDEIRAALLEKLEELGGVIVLLAKVEVVVEVVE 208 Query: 241 QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS 300 + + ++ D ++A+GR P + LEK G+++DE G+I+ D Y RT+V I++ Sbjct: 209 GVVVKVVLEDGIEADADLVAIGRGPNPNTLLLEKAGLELDERGYIVVDEYLRTSVPGIYA 268 Query: 301 LGDI 304 GD+ Sbjct: 269 AGDV 272 >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional. Length = 438 Score = 196 bits (501), Expect = 8e-51 Identities = 129/459 (28%), Positives = 217/459 (47%), Gaps = 40/459 (8%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--GGTCVIRGCIPKKLMFYASQYSEY 62 YDL+VIG G +G A A GKKVA+ EE + GGTC+ GCIP K + A++ Sbjct: 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE---- 59 Query: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV 122 K+ ++ ++ +N SRL + L +GV+++ ++ S + Sbjct: 60 -------------KNLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVI 106 Query: 123 YIANLNRTI--TSRYIVVSTGGSPNRMDFKG---SDLCITSDEIFSLKSLPQSTLIIGGG 177 + + I T+ IV++TG N + G S S I SL++LP+ IIGGG Sbjct: 107 EVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGIIGGG 166 Query: 178 YIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 I +EFAG+ N LGSK T++ ++IL + + + M G+ N V + Sbjct: 167 NIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKN 226 Query: 238 ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297 + Q+ ++ + + D ++ A GR P T +GLE +++ E G I D Y +T+V Sbjct: 227 DGDQV-LVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPG 285 Query: 298 IFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDL-----VPTAVFSKPEIASVG 352 +F++GD++G Q T +++ VF Y L VPT +F P ++ VG Sbjct: 286 VFAVGDVNGGPQFTYISLDD----FRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVG 341 Query: 353 LTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT---IMKIIVHADNHKVLGVHILGHEA 409 LTE+EA + Y K + + K++V+ + ++LG + G + Sbjct: 342 LTEKEAKEAGLP---YAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGS 398 Query: 410 SEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYN 448 EII ++ + + F + + HPT +E L ++N Sbjct: 399 QEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLFN 437 >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed. Length = 471 Score = 192 bits (491), Expect = 1e-49 Identities = 123/466 (26%), Positives = 208/466 (44%), Gaps = 38/466 (8%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQY 59 M + +VV+GAG +G +A AA LG + E Y GG C+ GCIP K + + ++ Sbjct: 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKV 60 Query: 60 SEYFEDSQGF---GWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGIL 116 E+++ G D + + K + +L + V + G Sbjct: 61 ---IEEAKALAEHGIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKF 117 Query: 117 SSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQST 171 + +++ + + I +++ G P ++ F D S + LK +P+ Sbjct: 118 TGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRL 177 Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLT-------DVMISRGM 224 L++GGG I +E + + LGS+ +V + ++ D DI + T ++M+ + Sbjct: 178 LVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQFNIMLETKV 237 Query: 225 QVFHNDTIESVVSESGQLKSILKSG--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282 V+ G K + + D V++AVGR P + EK GV++DE Sbjct: 238 TAVEAKEDGIYVTMEG------KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDER 291 Query: 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAV 342 GFI D RTNV IF++GDI G L +H E V D ++P+ Sbjct: 292 GFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAE-VIAGKKHYFDPKVIPSIA 350 Query: 343 FSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRF-----EHTIMKIIVHADNH 397 +++PE+A VGLTE+EA ++ Y+T FP S R + K+I + H Sbjct: 351 YTEPEVAWVGLTEKEAKEEG---IEYETATFPWAA--SGRAIASDCADGMTKLIFDKETH 405 Query: 398 KVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 +VLG I+G A E++ +G+ ++ GC +D + HPT E + Sbjct: 406 RVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESV 451 >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated. Length = 458 Score = 187 bits (476), Expect = 6e-48 Identities = 132/449 (29%), Positives = 221/449 (49%), Gaps = 19/449 (4%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66 LVVIG G +G +A AAQ GK V + +E +GGTC+ GC+P K + +++ + + + Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKA 62 Query: 67 QGFG--WSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYI 124 FG S DW+ + +++ +++L ++ +++ K + H V + Sbjct: 63 NHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRV 122 Query: 125 ANLNR--TITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTLIIGGGYIA 180 ++ + + +++ G P + F D I S SL S+P S LI+GGG I Sbjct: 123 EYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLIVGGGVIG 182 Query: 181 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG 240 EFA I + LG+K T+V +L D DI L + + + G+++F ++ + S Sbjct: 183 CEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKK 242 Query: 241 QLKSILKSGKI--VKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSI 298 Q G I V + V+++VGR PR + LEK GV+ G + + + +TNV I Sbjct: 243 QA-LFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNE-HMQTNVPHI 300 Query: 299 FSLGDISGHIQLTPVAIH----AAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLT 354 ++ GD+ G IQL VA H AA K N Y VP +++ PEIASVGLT Sbjct: 301 YACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVN-----YHAVPRCIYTSPEIASVGLT 355 Query: 355 EEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQ 414 E++A +++ + I + F L + +K+IV +++G+ I+G A+E+I Sbjct: 356 EKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIG 415 Query: 415 VLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 V + + +A HPT SE + Sbjct: 416 QGTVMIHTEVTADIMEDFIAAHPTLSEAI 444 >gnl|CDD|181132 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed. Length = 466 Score = 184 bits (469), Expect = 4e-47 Identities = 135/463 (29%), Positives = 229/463 (49%), Gaps = 31/463 (6%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60 M YD+VV+GAG G +A AAQLG K A+ E+ GG C+ GCIP K + ++ + Sbjct: 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELA 60 Query: 61 EYF-EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP 119 F ++++ FG S + +FD+ + K H ++ + G + Sbjct: 61 HIFTKEAKTFGISGE-VTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDA 119 Query: 120 HSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGSDL---CITSDEIFSLKSLPQSTLI 173 +++ + + T+T +++TG S + G+ L +T +E + LP+S +I Sbjct: 120 NTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PGTSLSENVVTYEEQILSRELPKSIVI 177 Query: 174 IGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIE 233 G G I +EFA +L + G T+V + L D+++ + + G+++ +E Sbjct: 178 AGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVE 237 Query: 234 SVVSESGQLKSIL--KSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDC 289 S+ ++ + K GK ++ D+V+ A+G PR G GLEK GV + + G I D Sbjct: 238 SIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD 297 Query: 290 YSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF-KDNPTIPDYDLVPTAVFSKPEI 348 Y RTNV I+++GD++ +QL VA ET+ + + DY ++P A F +P++ Sbjct: 298 YMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQV 357 Query: 349 ASVGLTEEEAVQKFCRLEIYKTKF--FPMKCFLSKRFEHTI------MKIIVHADNHKVL 400 AS GLTEE+A R E Y K FP F + H + +K++ A ++L Sbjct: 358 ASFGLTEEQA-----REEGYDVKVAKFP---FTANGKAHGLGDPTGFVKLVADAKYGELL 409 Query: 401 GVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 G H++G + SE++ L + K ++ R + HPT SE L Sbjct: 410 GGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEAL 452 >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional. Length = 441 Score = 164 bits (416), Expect = 4e-41 Identities = 113/457 (24%), Positives = 213/457 (46%), Gaps = 33/457 (7%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--GGTCVIRGCIPKKLMFYASQYSE 61 +Y V+IG G +G A A+ G +VA+ E+ GGTC+ GCIP K + + +Q Sbjct: 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ--- 59 Query: 62 YFEDSQGFGWSVDHKSFDWQSLITAQNKELSRL-ESFYHNRLESAGVEIFASKGILSSPH 120 + D+ I +N+ ++ L +HN + +++ + + H Sbjct: 60 --------------QHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNH 105 Query: 121 S--VYIANLNRTITSRYIVVSTGGS---PNRMDFKGSDLCITSDEIFSLKSLPQSTLIIG 175 S V+ N I I ++TG P + S + +LK LP I+G Sbjct: 106 SLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLGILG 165 Query: 176 GGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235 GGYI VEFA + + GSK T++ + L + D DI + ++ +G+ + N +E + Sbjct: 166 GGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERI 225 Query: 236 VSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295 Q++ + ++ D +++A GR P T + E G+ ++E G I+ D Y T Sbjct: 226 SHHENQVQVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTA 284 Query: 296 QSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNP-TIPDYDLVPTAVFSKPEIASVGLT 354 +I+++GD++G +Q T +++ + + + + D VP +VF P ++ VG+T Sbjct: 285 DNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMT 344 Query: 355 EEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT---IMKIIVHADNHKVLGVHILGHEASE 411 EE+A + +++ P+ R + ++K IV ++LG +L ++ E Sbjct: 345 EEQARESGADIQVVT---LPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHE 401 Query: 412 IIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYN 448 +I ++ + + AG + HP+ SE L +++ Sbjct: 402 MINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 >gnl|CDD|181141 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed. Length = 466 Score = 161 bits (410), Expect = 3e-40 Identities = 112/372 (30%), Positives = 176/372 (47%), Gaps = 30/372 (8%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66 +V+IG G G +A +AAQLG V + E +GG V+ C+P K + ++ + Sbjct: 4 IVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRA 63 Query: 67 QGFGWSV---DHKSFDWQSLITAQNKELSRLESF-YHNRLESAGVEIFASKGILSS---- 118 G D + A+ K L+ +S RLE GV + A +G L Sbjct: 64 AELGIRFIDDGEARVDLP-AVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLG 122 Query: 119 PHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTLI 173 PH V + + T+ + ++++TG SP + D +T +++ L LP+ ++ Sbjct: 123 PHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWRQLYDLDELPEHLIV 182 Query: 174 IGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIE 233 +G G EFA LG K TLV+ + +L D+D + L +V RGM V E Sbjct: 183 VGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAE 242 Query: 234 SVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT 293 SV + L G+ V+ ++AVG P T G+GLE+ GV++ +G I D SRT Sbjct: 243 SVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT 302 Query: 294 NVQSIFSLGDISGHIQLTPVA-----I---HAAACFVETVFKDNPTIPDYDLVPTAVFSK 345 +V I++ GD +G + L VA I HA E V +P V + VF++ Sbjct: 303 SVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALG---EAV---SPL--RLKTVASNVFTR 354 Query: 346 PEIASVGLTEEE 357 PEIA+VG+++ Sbjct: 355 PEIATVGVSQAA 366 >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed. Length = 466 Score = 160 bits (405), Expect = 8e-40 Identities = 126/460 (27%), Positives = 210/460 (45%), Gaps = 30/460 (6%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIPKKLMFYASQYSEY 62 YD+V+IG G G +A A QLG KVA E +GGTC+ GC+P K + +AS E Sbjct: 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHAS---EL 59 Query: 63 FEDSQG-----FGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILS 117 +E + G G V + + ++ +++ + L V+ G L Sbjct: 60 YEAASGGEFAHLGIEVK-PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLD 118 Query: 118 SPHSVYIA---NLNRTITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTL 172 V + + ++ IV++TG P + D I S SL +P+ + Sbjct: 119 GVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLV 178 Query: 173 IIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 +IG G I +E + LG++ T+V + I D++ + L + +GM+ + Sbjct: 179 VIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKV 238 Query: 233 ESVVSESGQLKSILK-----SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIIT 287 + + + L+ + + ++ D V++A+GR P T G+GLE VG++ D+ G + Sbjct: 239 TGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLAN 298 Query: 288 DCYSRTNVQSIFSLGDI-SGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKP 346 D + RT+V ++ +GD+ SG + A AC K +Y L+P ++++P Sbjct: 299 D-HHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGK--AGEVNYGLIPGVIYTRP 355 Query: 347 EIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT---IMKIIVHADNHKVLGVH 403 E+A+VG TEE+ K YK FP + H KI+ A +VLGVH Sbjct: 356 EVATVGKTEEQL--KAEGRA-YKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVH 412 Query: 404 ILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 ++G SE+I V ++ +D HPT SE L Sbjct: 413 MVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEAL 452 >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional. Length = 659 Score = 152 bits (386), Expect = 1e-37 Identities = 135/538 (25%), Positives = 219/538 (40%), Gaps = 97/538 (18%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAIC--EEYRVGGTCVIRGCIPKKLMFYAS-QYS 60 EYD+ +IG G G +A A + G KV I ++ +GGTCV GCIP K + YA+ +Y Sbjct: 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYR 175 Query: 61 EYFEDSQGFGWSVDHKSFDWQSLITAQNKEL---------SRLESFYH---NRLESAGVE 108 E ++ + + + +F + +L ++L+ + ++L Sbjct: 176 ELKNLAKLYTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIEN 235 Query: 109 IFASKGI-LSSPHSVYIAN-----LNRTITS---------RYIVVSTGGSPNRMDFKGSD 153 SK +S H I TI S + I+++TG +PN D D Sbjct: 236 GLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVD 295 Query: 154 --LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDI 211 TSD L+ L I+G G I +EF I +LGS+ +L D+D+ Sbjct: 296 QKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADV 355 Query: 212 RQGLTDVMI-SRGMQVFHNDTIESVVSESGQL---------------KSILKSGKIVKT- 254 + V + S+ ++V N IE V + G I +T Sbjct: 356 AKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETY 415 Query: 255 -DQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTN------VQSIFSLGDISGH 307 D ++A GR P T +GL+K+ ++M GF+ D + R +IF +GD +G Sbjct: 416 VDSCLVATGRKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGK 474 Query: 308 IQLTPVAIHAAACFVETVFKDN------------PTIPDYDLVPTAVFSKPEIASVGLTE 355 L A H A V+ + Y +P+ ++ PE+A +GLTE Sbjct: 475 QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTE 534 Query: 356 EEAVQKFCRLEIYK-TKFFPMK----CFLSKRF-----------------EHT--IMKII 391 +EA + + + F+ C + F ++T ++KI+ Sbjct: 535 KEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIV 594 Query: 392 VHADNHKVLGVHILGHEASEIIQ--VLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 D ++LG+ I+G AS +I VL + LK KD + HPT SE L + Sbjct: 595 YLKDTKEILGMFIVGSYASILIHEGVLAINLKLSV--KDLAHMVHSHPTISEVLDAAF 650 >gnl|CDD|173190 PRK14727, PRK14727, putative mercuric reductase; Provisional. Length = 479 Score = 147 bits (373), Expect = 4e-36 Identities = 109/426 (25%), Positives = 190/426 (44%), Gaps = 31/426 (7%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQYSEYFED 65 + +IG+GS+ +A AA+ G +V I E V GG CV GC+P K++ A+Q + + + Sbjct: 19 VAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLA-HQQR 77 Query: 66 SQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLES-----------AGVEIFASKG 114 S F + L+ Q + +R+E H + +S G F Sbjct: 78 SNPFDGVEAVAPSIDRGLLLHQ--QQARVEELRHAKYQSILDGNPALTLLKGYARFKDGN 135 Query: 115 ILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKG--SDLCITSDEIFSLKSLPQSTL 172 L R + + +++TG +P G TS E LP S Sbjct: 136 TLVVRLH---DGGERVLAADRCLIATGSTPTIPPIPGLMDTPYWTSTEALFSDELPASLT 192 Query: 173 IIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 +IG +A E A LGS+ T++ R +++L + D + + LT G++V N+T Sbjct: 193 VIGSSVVAAEIAQAYARLGSRVTILAR-STLLFREDPLLGETLTACFEKEGIEVL-NNTQ 250 Query: 233 ESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSR 292 S+V + ++ ++++++ GR T + LE VGV D +G I+ + Sbjct: 251 ASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAME 310 Query: 293 TNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVG 352 T+ I++ GD S Q VA A + + N T+ D +P +F+ P++A+VG Sbjct: 311 TSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATL-DLSAMPAVIFTDPQVATVG 369 Query: 353 LTEEEA----VQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHE 408 L+E +A ++ R+ + + F + F +K++ K++G IL HE Sbjct: 370 LSEAKAHLSGIETISRVLTMENVPRALANFETDGF----IKLVAEEGTRKLIGAQILAHE 425 Query: 409 ASEIIQ 414 E+IQ Sbjct: 426 GGELIQ 431 >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional. Length = 561 Score = 146 bits (370), Expect = 1e-35 Identities = 111/436 (25%), Positives = 198/436 (45%), Gaps = 51/436 (11%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66 + VIG+G + + +A A + G +V + E +GGTCV GC+P K+M A+ + +S Sbjct: 101 VAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRES 160 Query: 67 QGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGIL-SSP------ 119 G +S + AQ + +R++ H + E GIL +P Sbjct: 161 PFDGGIAATVPTIDRSRLLAQQQ--ARVDELRHAKYE----------GILDGNPAITVLH 208 Query: 120 --------HSVYIANLN---RTITSRYIVVSTGGSPNRMDFKG-SDLCI-TSDEIFSLKS 166 ++ + + R + +++TG SP G + TS E + Sbjct: 209 GEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWTSTEALVSDT 268 Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226 +P+ +IG +A+E A LGSK T++ R +++ + D I + +T + G++V Sbjct: 269 IPERLAVIGSSVVALELAQAFARLGSKVTILAR-STLFFREDPAIGEAVTAAFRAEGIEV 327 Query: 227 FHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFII 286 + V G+ G++ + D++++A GR P T + L+ GV ++ G I+ Sbjct: 328 LEHTQASQVAHVDGEFVLTTGHGEL-RADKLLVATGRAPNTRSLALDAAGVTVNAQGAIV 386 Query: 287 TDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDL----VPTAV 342 D RT+V I++ GD + Q VA AAA T N T D L +P V Sbjct: 387 IDQGMRTSVPHIYAAGDCTDQPQFVYVA--AAA---GTRAAINMTGGDAALDLTAMPAVV 441 Query: 343 FSKPEIASVGLTEEEA----VQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHK 398 F+ P++A+VG +E EA ++ R + F ++ F +K+++ + + Sbjct: 442 FTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF----IKLVIEEGSGR 497 Query: 399 VLGVHILGHEASEIIQ 414 ++GV + EA E+IQ Sbjct: 498 LIGVQAVAPEAGELIQ 513 >gnl|CDD|173157 PRK14694, PRK14694, putative mercuric reductase; Provisional. Length = 468 Score = 144 bits (365), Expect = 4e-35 Identities = 111/426 (26%), Positives = 201/426 (47%), Gaps = 14/426 (3%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66 + VIG+G S + +A A + G +V + E +GGTCV GC+P K+M A+ + +S Sbjct: 9 IAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRES 68 Query: 67 Q-GFGWSVDHKSFDWQSLITAQNKELSRL-ESFYHNRL-ESAGVEIFASKGILSSPHSVY 123 G S D +L+ Q + L ES Y + L E+A + + + ++ Sbjct: 69 PFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLT 128 Query: 124 IANLN----RTITSRYIVVSTGGSPNRMDFKG-SDL-CITSDEIFSLKSLPQSTLIIGGG 177 + LN +T+ + TG P G ++ +TS L +P+ L+IG Sbjct: 129 VT-LNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELDHIPERLLVIGAS 187 Query: 178 YIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 +A+E A LGS+ T++ R + +LS+ D + + + G++V T S V Sbjct: 188 VVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVL-KQTQASEVD 245 Query: 238 ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297 +G+ + + ++ +Q+++A GRTP T + LE +GV+ E G I D + +T V Sbjct: 246 YNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSG 304 Query: 298 IFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEE 357 I++ GD + Q VA + + + ++ D +P +F+ P++A+VGL+E E Sbjct: 305 IYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASL-DLSAMPEVIFTDPQVATVGLSEAE 363 Query: 358 AVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLG 417 A + + + L +K++ + ++LGV ++ EA E+IQ Sbjct: 364 AQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAV 423 Query: 418 VCLKAG 423 + L+A Sbjct: 424 MALRAR 429 >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. Length = 427 Score = 122 bits (308), Expect = 2e-28 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 59/332 (17%) Query: 135 YIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLP--------------QSTLIIGGGYIA 180 Y+++S G SP + +G +L D +F+L++L ++ +IIGGGYI Sbjct: 94 YLILSPGASPIVPNIEGINL----DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIG 149 Query: 181 VEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 +E A L G TL+ R IL+K FD ++ Q + + + + + N+ ++S+ Sbjct: 150 IEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE-GE 208 Query: 240 GQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299 ++K + SG + + D VILA G P + + G+K+ E G I + +T+V +I+ Sbjct: 209 ERVK-VFTSGGVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIY 265 Query: 300 SLGDIS----------GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAV--FSKPE 347 + GD++ + L A E + ++ + T + F Sbjct: 266 AAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGV--LGTNITKFFDLT 323 Query: 348 IASVGLTEEEAVQKFCRLEI-YKTKFFPMKCFLSKRFEHT---------IMKIIVHADNH 397 IAS G+TE EA +L I YKT F K H +K+I D Sbjct: 324 IASTGVTENEAK----KLNIDYKTVFV-------KAKTHANYYPGNSPLHLKLIYEKDTR 372 Query: 398 KVLGVHILGHEASEI-IQVLGVCLKAGCVKKD 428 ++LG +G E ++ I VL + AG KD Sbjct: 373 RILGAQAVGKEGADKRIDVLAAAIMAGLTVKD 404 >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed. Length = 444 Score = 90.5 bits (225), Expect = 8e-19 Identities = 86/352 (24%), Positives = 138/352 (39%), Gaps = 92/352 (26%) Query: 128 NRTITSRY--IVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLP--------------QST 171 Y ++++TG P K +L + +++LKS+ ++ Sbjct: 97 GSIFNDTYDKLMIATGARPIIPPIKNINL----ENVYTLKSMEDGLALKELLKDEEIKNI 152 Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-KFDSDIRQGLTDVMISRGMQVFHND 230 +IIG G+I +E LG ++ + IL FD +I + + + G+++ N+ Sbjct: 153 VIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNE 212 Query: 231 TIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCY 290 ++S++ E + G+ + D VI+A G P T LE G+K +NG II D Y Sbjct: 213 FVKSLIGEDKVEGVVTDKGEY-EADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEY 269 Query: 291 SRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTA--------- 341 T++++I++ GD A V N +P L TA Sbjct: 270 GETSIENIYAAGD--------------CATIYNIVSNKNVYVP---LATTANKLGRMVGE 312 Query: 342 -------------------VFSKPEIASVGLTEEEAVQKFCRLEI-YKTKFFPMKCFLSK 381 V E A GLTEEEA + L I YKT F K Sbjct: 313 NLAGRHVSFKGTLGSACIKVLDL-EAARTGLTEEEAKK----LGIDYKTVFIKDKN---- 363 Query: 382 RFEHT---------IMKIIVHADNHKVLGVHILGHEASEI-IQVLGVCLKAG 423 HT +K+I AD +LG I+G + + + I L V + A Sbjct: 364 ---HTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAK 412 >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional. Length = 438 Score = 88.7 bits (220), Expect = 3e-18 Identities = 72/264 (27%), Positives = 112/264 (42%), Gaps = 40/264 (15%) Query: 121 SVYIANLNRTITSRY--IVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLP---------- 168 +V N Y +++S G S N + F+ SD F+L++L Sbjct: 92 TVLNRKTNEQFEESYDKLILSPGASANSLGFE-------SDITFTLRNLEDTDAIDQFIK 144 Query: 169 ----QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGM 224 L++G GYI++E L G TL+ R + I D+D+ Q + D + R + Sbjct: 145 ANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREI 204 Query: 225 QVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGF 284 N+ I+++ KSGK+ D +I VG P + I E +K+D+ GF Sbjct: 205 PYRLNEEIDAINGNE----VTFKSGKVEHYDMIIEGVGTHPNSKFI--ESSNIKLDDKGF 258 Query: 285 IITDCYSRTNVQSIFSLGDISG----HIQL---TPVA--IHAAACFVETVFKDNPTIPDY 335 I + TNV +I+++GDI H+ L P+A H AA V N TI Sbjct: 259 IPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFK 318 Query: 336 DLVPTAV--FSKPEIASVGLTEEE 357 + + F ASVG+ E Sbjct: 319 GFLGNNIVKFFDYTFASVGVKPNE 342 >gnl|CDD|162288 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). Length = 300 Score = 82.3 bits (204), Expect = 3e-16 Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 70/326 (21%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE 64 YD+++IGAG +G+ +A AA+ K I E GG + E Sbjct: 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEV---------------E 45 Query: 65 DSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFA---SKGILSSPHS 121 + GF I+ EL +E + G EI K LS Sbjct: 46 NYPGFP-----------EGISGP--EL--MEKMK-EQAVKFGAEIIYEEVIKVDLSDRPF 89 Query: 122 VYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL--------CITSDEIFSLKSLPQSTLI 173 + T++ ++++TG S ++ G D C T D F + + Sbjct: 90 KVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKN---KEVAV 146 Query: 174 IGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQ----VFH- 228 +GGG A+E A L + K TLV R + KF ++ +++ R + F Sbjct: 147 VGGGDSAIEEALYLTRIAKKVTLVHRRD----KFRAE------KILLDRLRKNPNIEFLW 196 Query: 229 NDTIESVVSESGQLKSIL------KSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282 N T++ +V ++ ++ + + +K D V +A+G P T L K +++DE Sbjct: 197 NSTVKEIVGDNK-VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT---ELLKGLLELDEG 252 Query: 283 GFIITDCYSRTNVQSIFSLGDISGHI 308 G+I+TD RT+V +F+ GD+ Sbjct: 253 GYIVTDEGMRTSVPGVFAAGDVRDKG 278 >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional. Length = 377 Score = 59.2 bits (144), Expect = 2e-09 Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 39/201 (19%) Query: 137 VVSTGGSPNRMDFKGSDLCITSDEIFSLKSL------------PQSTLIIGGGYIAVEFA 184 V++TG S G +L +T L S Q L++GGG I E A Sbjct: 104 VLATGASAFVPPIPGRELMLT------LNSQQEYRAAETQLRDAQRVLVVGGGLIGTELA 157 Query: 185 GILNSLGSKTTLVTRGNSILSKF-DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLK 243 L G TLV S+L+ ++ L + G+ + ++ + ++ Sbjct: 158 MDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIR 217 Query: 244 SILKSGKIVKTDQVILAVGRTPRT---TGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS 300 + L SG+ ++ D VI A G P T GL N I+ D Y +T+ I++ Sbjct: 218 ATLDSGRSIEVDAVIAAAGLRPNTALARRAGL-------AVNRGIVVDSYLQTSAPDIYA 270 Query: 301 LGD---ISGH-------IQLT 311 LGD I+G IQL+ Sbjct: 271 LGDCAEINGQVLPFLQPIQLS 291 >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit. Length = 785 Score = 56.0 bits (135), Expect = 2e-08 Identities = 39/193 (20%), Positives = 89/193 (46%), Gaps = 13/193 (6%) Query: 124 IANLNRTITSRYIVVSTGGSPNRMDFKGSDL--CI---TSDEIFSLKSLPQSTL---IIG 175 I + RT++ ++++TG P + G+D T +++ ++ ++ Q +IG Sbjct: 88 ITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIG 147 Query: 176 GGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIES 234 GG + +E A L +LG +++ +++K D + L + +G+ Sbjct: 148 GGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVE 207 Query: 235 VVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTN 294 +V + + K G ++ D +++A G P + + G+K+ N II + +T+ Sbjct: 208 IVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE-LAVS-AGIKV--NRGIIVNDSMQTS 263 Query: 295 VQSIFSLGDISGH 307 I+++G+ + H Sbjct: 264 DPDIYAVGECAEH 276 >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 Score = 55.6 bits (134), Expect = 3e-08 Identities = 74/335 (22%), Positives = 125/335 (37%), Gaps = 92/335 (27%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCV----------IRGCIPKKLMF 54 YDL++IG G +G+ + A + I E+ GG I +LM Sbjct: 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELM- 63 Query: 55 YASQYSEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKG 114 E + +Q FG + E+ ++ + I ++G Sbjct: 64 -----QEMRQQAQDFG-------------VKFLQAEVLDVD------FDGDIKTIKTARG 99 Query: 115 ILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSD--------LCITSD-EIFSLK 165 + +V IA TG SP ++ F G + C T D E F+ Sbjct: 100 DYKT-LAVLIA--------------TGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGM 144 Query: 166 SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGN----------------SILSKFDS 209 + +IGGG+ A E A L SK T++ R I KF++ Sbjct: 145 DV----FVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNT 200 Query: 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 ++++ D + F N+ +G+ + K+ K T V + VG P + Sbjct: 201 ELKEATGDDGLRYA--KFVNN-------VTGE-ITEYKAPKDAGTFGVFVFVGYAPSSE- 249 Query: 270 IGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304 L K V++D+ G+I T+ TNV +++ GD+ Sbjct: 250 --LFKGVVELDKRGYIPTNEDMETNVPGVYAAGDL 282 >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional. Length = 396 Score = 55.3 bits (133), Expect = 3e-08 Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 16/142 (11%) Query: 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISR----GM 224 +S +I+G G I +E A K T++ +++ + Q ++ R G+ Sbjct: 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQ---RYLLQRHQQAGV 201 Query: 225 QVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVK--MDEN 282 ++ N+ IE VV +++ L+SG+ ++ D VI +G + +++ + +D Sbjct: 202 RILLNNAIEHVVDGE-KVELTLQSGETLQADVVIYGIGISAN------DQLAREANLDTA 254 Query: 283 GFIITDCYSRTNVQSIFSLGDI 304 I+ D RT +IF+ GD+ Sbjct: 255 NGIVIDEACRTCDPAIFAGGDV 276 >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional. Length = 424 Score = 49.8 bits (119), Expect = 1e-06 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 56/215 (26%) Query: 135 YIVVSTGGSPNRMDFKGSDLCITSDEIFSLK-------------------SLPQ------ 169 +VV+ G PN + G + + F LK SLP Sbjct: 116 KLVVAHGARPNTFNIPGVE-----ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEER 170 Query: 170 ----STLIIGGGYIAVEFAGILNSLGS--------------KTTLVTRGNSILSKFDSDI 211 +++GGG VEFA L K T++ G+ +L FD + Sbjct: 171 KRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQAL 230 Query: 212 RQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIG 271 R+ + G+ + ++ V+ + +LK G+++ T V+ + G P Sbjct: 231 RKYGQRRLRRLGVDIRTKTAVKEVLDKE----VVLKDGEVIPTGLVVWSTGVGPGPLTKQ 286 Query: 272 LEKVGVKMDENGFIITDCYSRT-NVQSIFSLGDIS 305 L+ V G I D + R + ++F+LGD + Sbjct: 287 LK---VDKTSRGRISVDDHLRVKPIPNVFALGDCA 318 >gnl|CDD|183786 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed. Length = 578 Score = 49.7 bits (119), Expect = 2e-06 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 3/40 (7%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE--EYRVGGT 41 E+D++VIGAG++G+ +A AA G KV + E EY VGGT Sbjct: 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY-VGGT 54 >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. Length = 449 Score = 48.3 bits (115), Expect = 4e-06 Identities = 72/343 (20%), Positives = 119/343 (34%), Gaps = 103/343 (30%) Query: 9 VIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQG 68 VIGAG +G+ A A+ G V + E G V G IP+ Sbjct: 138 VIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-IPE------------------ 178 Query: 69 FGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN 128 + + + E+ L+ GV + + Sbjct: 179 --FRLPKEIVVT---------EIKTLKKL--------GVTFRMNFLV------------G 207 Query: 129 RTIT-----SRY--IVVSTG-GSPNRMDFKGSDLCITSDEI-------------FSLKSL 167 +T T S+Y + + TG G P M+ G +LC F Sbjct: 208 KTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADT 267 Query: 168 P----QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRG 223 P +S ++IGGG AV+ A LG++ + R ++ D R G Sbjct: 268 PVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR----TREDMTARVEEIAHAEEEG 323 Query: 224 MQV-FHNDTIESVVSESGQLKSI----------LKSGK-----------IVKTDQVILAV 261 ++ F +E + E G ++++ + SG+ ++ D VI+A+ Sbjct: 324 VKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAI 383 Query: 262 GRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304 G I E +K E G I+ D RT++ +F+ GDI Sbjct: 384 GNGSNP--IMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424 Score = 27.5 bits (61), Expect = 8.2 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICEEYRVG 39 VVIG G++ V SAR A +LG +V YR Sbjct: 276 VVIGGGNTAVDSARTALRLGAEVHCL--YRRT 305 >gnl|CDD|163170 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 Score = 47.3 bits (113), Expect = 9e-06 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 17/155 (10%) Query: 172 LIIGGGYIAVEFAGILNSLGSKTTL-----VTRGNSILSKFDSDIRQGLTDVMISRGMQV 226 ++GGG VE A L K L + G S+L F + +R+ + ++ RG++V Sbjct: 149 AVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEV 208 Query: 227 FHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFII 286 + G L IL G+ + D ++ A G L + G+ +DE+GF+ Sbjct: 209 HEGAPVTRG--PDGAL--ILADGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLR 261 Query: 287 TDCYSRT-NVQSIFSLGDISGHIQLTP---VAIHA 317 D ++ + +F+ GD I P ++A Sbjct: 262 VDPTLQSLSHPHVFAAGDC-AVITDAPRPKAGVYA 295 >gnl|CDD|181124 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 626 Score = 46.2 bits (110), Expect = 2e-05 Identities = 16/31 (51%), Positives = 24/31 (77%) Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 R+ YD+VVIGAG +G+R+A A + G +VA+ Sbjct: 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAV 36 >gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed. Length = 581 Score = 43.9 bits (104), Expect = 8e-05 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGT 41 E D++VIG+G++G+ +A AA G KV + E + GGT Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 >gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional. Length = 321 Score = 42.7 bits (100), Expect = 2e-04 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 31/210 (14%) Query: 132 TSRYIVVSTGGS------PNRMDFKGSDL--CITSDEIFSLKSLPQSTLIIGGGYIAVEF 183 T ++++TG S P+ FKG + C T D F Q +IGGG AVE Sbjct: 105 TCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRN---QKVAVIGGGNTAVEE 161 Query: 184 AGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLK 243 A L+++ S+ L+ R + + + + + L D + + + + N T+E V + + Sbjct: 162 ALYLSNIASEVHLIHRRDGF--RAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVT 219 Query: 244 SILKSGKIVKTDQV--------ILAVGRTPRTTGIGLEKVGVKMDENGFI-----ITDCY 290 ++ +D + +A+G +P T G ENG+I I Sbjct: 220 G-VRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE----GQLELENGYIKVQSGIHGNA 274 Query: 291 SRTNVQSIFSLGDISGHIQLTPVAIHAAAC 320 ++T++ +F+ GD+ HI + C Sbjct: 275 TQTSIPGVFAAGDVMDHIYRQAITSAGTGC 304 >gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. Length = 295 Score = 41.9 bits (99), Expect = 3e-04 Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFY 55 YD+VV+GAG +G +A A G +V + E+ G + +++ Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEE 51 >gnl|CDD|163151 TIGR03140, AhpF, alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. Length = 515 Score = 42.0 bits (99), Expect = 4e-04 Identities = 68/323 (21%), Positives = 127/323 (39%), Gaps = 70/323 (21%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE 64 YD++V+G G +G +A AA+ G + A+ E R+GG + Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQV---------------------K 250 Query: 65 DSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIF----ASKGILSSPH 120 D+ G ++LI+ S+L + ++ +++ A K Sbjct: 251 DTVGI-----------ENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL 299 Query: 121 SVYIANLNRTITSRYIVVSTG------GSPNRMDF--KGSDLCITSD-EIFSLKSLPQST 171 V + ++ ++V+TG G P ++ KG C D F K Sbjct: 300 IVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKD----V 355 Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIR--QGLTDVMISR-GMQVFH 228 +IGGG +E A L + T++ +F +++ + L D + S + + Sbjct: 356 AVIGGGNSGIEAAIDLAGIVRHVTVL--------EFADELKADKVLQDKLKSLPNVDILT 407 Query: 229 NDTIESVVSESGQLKSIL----KSGKIVKT--DQVILAVGRTPRTTGIGLEKVGVKMDEN 282 + +V + ++ I SG+ + D V + +G P T K V+++ Sbjct: 408 SAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNT---EWLKDAVELNRR 464 Query: 283 GFIITDCYSRTNVQSIFSLGDIS 305 G I+ D RT+V IF+ GD++ Sbjct: 465 GEIVIDERGRTSVPGIFAAGDVT 487 Score = 30.8 bits (70), Expect = 0.68 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 36/132 (27%) Query: 168 PQSTLIIGGG--------YIA-----------------VEFAGILNSLGSKTTLVTRGNS 202 P L++GGG Y A + GI N + T G+ Sbjct: 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYT---TGSQ 268 Query: 203 ILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 + + + I+Q D+M N + + +E G + L+SG+++K VI+A G Sbjct: 269 LAANLEEHIKQYPIDLM--------ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATG 320 Query: 263 RTPRTTGIGLEK 274 R G+ EK Sbjct: 321 ARWRKLGVPGEK 332 >gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed. Length = 471 Score = 41.7 bits (99), Expect = 4e-04 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 248 SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTNVQSIFSLGD 303 S ++ D V+LA+G T G+ L + GV++DE G + + +T+ +F+ GD Sbjct: 383 SEFVLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438 >gnl|CDD|161671 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. Length = 377 Score = 40.2 bits (94), Expect = 0.001 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTC 42 +D +++GAG SG+ A + AQL K+V + E+ +GG C Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40 >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 Score = 39.0 bits (91), Expect = 0.003 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Query: 238 ESGQLKSILKSGKIVK--TDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSR-TN 294 SG+ + + +G+ V D VI AVG T L+K G+ +DE G+ + + + TN Sbjct: 748 ASGRRRPV-GTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVNQATGETN 804 Query: 295 VQSIFSLGDISGHIQLTPVAIHAA 318 + ++F +GD P I A Sbjct: 805 ITNVFVIGD----ANRGPATIVEA 824 >gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated. Length = 422 Score = 38.3 bits (90), Expect = 0.005 Identities = 13/29 (44%), Positives = 23/29 (79%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 ++D++VIG G +G+ +A AA+ GK+VA+ Sbjct: 2 KFDVLVIGGGLAGLTAALAAAEAGKRVAL 30 Score = 28.3 bits (64), Expect = 4.2 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 15/54 (27%) Query: 171 TLIIGGGYIAVEFAGILNSL-----GSKTTLVTRGNSILSKFDSDIRQGLTDVM 219 L+IGGG AG+ +L G + LV +G L F S G D++ Sbjct: 5 VLVIGGG-----LAGLTAALAAAEAGKRVALVAKGQGALH-FSS----GSIDLL 48 >gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. Length = 985 Score = 37.8 bits (88), Expect = 0.005 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGGT 41 D++V+GAG +G+ +A AA+ G +V + +E GG+ Sbjct: 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS 201 >gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed. Length = 549 Score = 37.6 bits (88), Expect = 0.008 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---EYRVGG 40 M + D++V+GAG +G+ +A A GK+V + + E +GG Sbjct: 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 >gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional. Length = 572 Score = 36.7 bits (85), Expect = 0.014 Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 M + YD+VV+G+G+ G+ +A AA G KV + E+ G Sbjct: 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCG 44 >gnl|CDD|184008 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase; Provisional. Length = 502 Score = 36.5 bits (85), Expect = 0.014 Identities = 17/30 (56%), Positives = 19/30 (63%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 YDL VIG G +G AR AA G KV +CE Sbjct: 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCE 36 >gnl|CDD|185473 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional. Length = 617 Score = 35.5 bits (82), Expect = 0.028 Identities = 14/29 (48%), Positives = 20/29 (68%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVA 31 + YD VV+GAG +G+R+A +LG K A Sbjct: 28 HTYDAVVVGAGGAGLRAALGLVELGYKTA 56 >gnl|CDD|181289 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 583 Score = 35.4 bits (82), Expect = 0.030 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 ++ YD+V++GAG +G+R+A A + A+ Sbjct: 2 QQHRYDVVIVGAGGAGMRAAIEAGP-RARTAV 32 >gnl|CDD|181641 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 598 Score = 35.3 bits (82), Expect = 0.032 Identities = 13/29 (44%), Positives = 21/29 (72%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVA 31 ++YD+VV+GAG +G+R+ A+ G K A Sbjct: 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTA 39 >gnl|CDD|183734 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional. Length = 352 Score = 35.4 bits (82), Expect = 0.032 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 251 IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304 +++ D V+ A+G P T E +G++++ G I+ D T+ + +F+ GD+ Sbjct: 272 VLEADTVVFAIGEIP-TPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDV 324 >gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 588 Score = 35.1 bits (81), Expect = 0.040 Identities = 14/29 (48%), Positives = 21/29 (72%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 E+D VVIGAG +G+R+A +Q G+ A+ Sbjct: 7 EFDAVVIGAGGAGMRAALQISQSGQSCAL 35 >gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated. Length = 618 Score = 35.0 bits (82), Expect = 0.041 Identities = 13/32 (40%), Positives = 21/32 (65%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 M EYD++V+G G +G +A AA++G K + Sbjct: 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLL 32 >gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 591 Score = 34.8 bits (80), Expect = 0.043 Identities = 13/31 (41%), Positives = 23/31 (74%) Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 R ++D+V++GAG SG+R++ A+ G VA+ Sbjct: 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAV 40 >gnl|CDD|183296 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional. Length = 457 Score = 34.8 bits (81), Expect = 0.048 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 12/66 (18%) Query: 245 ILKSGKIVKTDQVILAVGRTPR------TTGIGLEKVGVKMDENGFIITDCYSRTNVQSI 298 I S + D VI A+G+TP T G+ L + G I D RT++ + Sbjct: 367 IEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWG------TIIADDETGRTSLPGV 420 Query: 299 FSLGDI 304 F+ GDI Sbjct: 421 FAGGDI 426 >gnl|CDD|179368 PRK02106, PRK02106, choline dehydrogenase; Validated. Length = 560 Score = 34.8 bits (81), Expect = 0.049 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 1 MRYEYDLVVIGAGSSG-VRSARLAAQLGKKVAICE 34 EYD ++IGAGS+G V + RL+ V + E Sbjct: 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLE 36 >gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. Length = 254 Score = 34.4 bits (79), Expect = 0.058 Identities = 13/31 (41%), Positives = 21/31 (67%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 E D++++GAG SG+ +A A+ G KV + E Sbjct: 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLE 51 >gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional. Length = 257 Score = 34.4 bits (80), Expect = 0.069 Identities = 14/32 (43%), Positives = 21/32 (65%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 E D+ ++GAG SG+ +A A+ G KVA+ E Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 >gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional. Length = 564 Score = 34.1 bits (79), Expect = 0.078 Identities = 33/134 (24%), Positives = 46/134 (34%), Gaps = 30/134 (22%) Query: 255 DQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSR-TNVQSIFSLGDISGHIQLTPV 313 D V+LA+G+ + G LE V G + D T +F+ GD+ + Sbjct: 370 DLVVLAIGQDIDSAG--LESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTT 427 Query: 314 AI-H---AAAC--------------FVETVFKDNPTIPDYDLVPTAVFSKPEIASV---- 351 AI H AA E V D + + P A + + Sbjct: 428 AIGHGKKAARNIDAFLGGEPYEHRPKREIVKFDKLNLWYFTDAPRAQRPELDADERVGDF 487 Query: 352 -----GLTEEEAVQ 360 GLTEEEA Q Sbjct: 488 DEVLGGLTEEEARQ 501 >gnl|CDD|178188 PLN02576, PLN02576, protoporphyrinogen oxidase. Length = 496 Score = 33.8 bits (78), Expect = 0.099 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Query: 4 EYDLVVIGAGSSGVRSA-RLAAQLGKKVAICE-EYRVGG 40 D+ V+GAG SG+ +A LA++ G V + E RVGG Sbjct: 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 >gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated. Length = 492 Score = 33.7 bits (78), Expect = 0.11 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYA 56 E D+VV+G G++G +A AA G +V + E GG + G + Y Sbjct: 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGV-----IYL 68 >gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed. Length = 574 Score = 33.5 bits (77), Expect = 0.11 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRG 46 D++VIG+G+ G+ +A A +LG V + E E GGT G Sbjct: 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSG 52 >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional. Length = 847 Score = 33.6 bits (77), Expect = 0.12 Identities = 48/233 (20%), Positives = 105/233 (45%), Gaps = 22/233 (9%) Query: 85 TAQNKELSRLESFYHNRLESAGVEIF---ASKGILSSPHSVYIANLNRTITSRYIVVSTG 141 TA+ L R E FY E G+++ + I ++ ++ RT+ ++++TG Sbjct: 57 TAEELSLVR-EGFY----EKHGIKVLVGERAITINRQEKVIH-SSAGRTVFYDKLIMATG 110 Query: 142 GSPNRMDFKGSDL--CITSDEIFSLKSL------PQSTLIIGGGYIAVEFAGILNSLGSK 193 P KGS+ C I L ++ + ++GGG + +E AG L +LG + Sbjct: 111 SYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVE 170 Query: 194 TTLVTRGNSILS-KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILK--SGK 250 T ++ +++ + D + L + S G++V + +V E + + ++ G Sbjct: 171 THVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGS 230 Query: 251 IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGD 303 ++ D ++ + G P+ + G+ + G I+ + +T+ I+++G+ Sbjct: 231 ELEVDFIVFSTGIRPQDKLA--TQCGLAVAPRGGIVINDSCQTSDPDIYAIGE 281 >gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional. Length = 1019 Score = 33.4 bits (77), Expect = 0.13 Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Query: 238 ESGQLKSILKSGKIV--KTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNV 295 ESG+ + +++G+ V + D VI A+G T L+ G+ +D+ G+ + D T++ Sbjct: 751 ESGR-RRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKKGWPVVDANGETSL 807 Query: 296 QSIFSLGD 303 +++ +GD Sbjct: 808 TNVYMIGD 815 Score = 30.7 bits (70), Expect = 0.74 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIP 49 VIGAG +G+ +A A+ G V + E E GG V++ IP Sbjct: 543 AVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG--VVKNIIP 583 >gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 577 Score = 33.1 bits (76), Expect = 0.14 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGK-KVAIC 33 +YD+V++G+G +G+R+A AA+ K+++ Sbjct: 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVA 35 >gnl|CDD|183388 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed. Length = 508 Score = 33.2 bits (77), Expect = 0.16 Identities = 16/30 (53%), Positives = 19/30 (63%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 YDL+VIG G +G AR AA G V +CE Sbjct: 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCE 36 >gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit; Validated. Length = 506 Score = 32.9 bits (75), Expect = 0.18 Identities = 14/40 (35%), Positives = 24/40 (60%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 ++ +YD+V++GAG +G+ +A A G I E+ V G Sbjct: 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG 97 >gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. Length = 566 Score = 32.7 bits (75), Expect = 0.22 Identities = 12/27 (44%), Positives = 20/27 (74%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAI 32 D+V++GAG +G+R+A AA+ G A+ Sbjct: 1 DVVIVGAGLAGLRAAVEAAKAGLNTAV 27 >gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. Length = 400 Score = 32.2 bits (74), Expect = 0.29 Identities = 10/27 (37%), Positives = 18/27 (66%) Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICE 34 ++IG G++G+ +A AA+ G V + E Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLE 27 >gnl|CDD|162990 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. Length = 492 Score = 32.0 bits (73), Expect = 0.34 Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTC 42 +VVIGAG +G+ +A L A+ G +V + E++ G C Sbjct: 4 VVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39 >gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional. Length = 752 Score = 32.0 bits (73), Expect = 0.35 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 73/223 (32%) Query: 136 IVVSTG-GSPNRMDFKGSDL--CITSDEIFSLKSL----------P----QSTLIIGGGY 178 I +++G G PN M+ G + ++S+E + +L P + ++GGG Sbjct: 521 IFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGN 580 Query: 179 IAVEFAGILNSLGSKT-TLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFH--------- 228 A++ A LG++ T+V R + + M +R +V H Sbjct: 581 TAMDSARTAKRLGAERVTIVYRRSE--------------EEMPARLEEVKHAKEEGIEFL 626 Query: 229 --NDTIESVVSESGQLKSIL----------KSGK-----------IVKTDQVILAVGRTP 265 ++ IE + E G +K ++ SG+ V D VI++VG +P Sbjct: 627 TLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSP 686 Query: 266 R----TTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304 ++ GLE ++ G I+ D ++++ I++ GDI Sbjct: 687 NPLVPSSIPGLE-----LNRKGTIVVDEEMQSSIPGIYAGGDI 724 >gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). Length = 617 Score = 32.0 bits (73), Expect = 0.38 Identities = 11/26 (42%), Positives = 18/26 (69%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKV 30 +D++VIG G +G +A AA++G K Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKT 26 Score = 28.5 bits (64), Expect = 3.4 Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVT 198 ++IGGG+ E A +G+KT L+T Sbjct: 4 IVIGGGHAGCEAALAAARMGAKTLLLT 30 >gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365 Score = 31.9 bits (73), Expect = 0.39 Identities = 13/30 (43%), Positives = 19/30 (63%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 YDL+++GAG G+ A AA+ G V + E Sbjct: 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIE 30 >gnl|CDD|179461 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 459 Score = 31.8 bits (73), Expect = 0.39 Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICEE 35 VIG G SG+ +ARL G +V + + Sbjct: 4 HVIGLGRSGIAAARLLKAQGWEVVVSDR 31 >gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone] flavoprotein subunit. Length = 635 Score = 31.8 bits (72), Expect = 0.43 Identities = 12/29 (41%), Positives = 19/29 (65%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVA 31 + YD VV+GAG +G+R+A ++ G A Sbjct: 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTA 77 >gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed. Length = 566 Score = 31.4 bits (71), Expect = 0.47 Identities = 16/31 (51%), Positives = 20/31 (64%) Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 + EYD VVIG G +G+ SA A G KVA+ Sbjct: 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAV 33 >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional. Length = 464 Score = 31.5 bits (72), Expect = 0.49 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 238 ESGQLKSILKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTN 294 SG+ + + G +++ D VI+++G +P I G+K+++ G I+ D + T+ Sbjct: 367 ASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL-ISSTTKGLKINKRGCIVADEETGLTS 425 Query: 295 VQSIFSLGDI 304 + +F+ GD Sbjct: 426 KEGVFAGGDA 435 >gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional. Length = 944 Score = 31.3 bits (71), Expect = 0.50 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 24/155 (15%) Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGN-----SILSKFDSDIRQGLTDVMISRGMQV 226 +IGGG A++ A LG T+V R + + + + +G+ ++ + R + Sbjct: 451 FVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGI-NLAVLRAPRE 509 Query: 227 FHNDTIESVVS-------------ESGQLKSILKSGKI--VKTDQVILAVGRTPRTTGIG 271 F D V+ +SG+ +S +G+I V D VI+A+G T + Sbjct: 510 FIGDDHTHFVTHALLDVNELGEPDKSGR-RSPKPTGEIERVPVDLVIMALGNTANPI-MK 567 Query: 272 LEKVGVKMDENGFIITDCYS-RTNVQSIFSLGDIS 305 + G+K ++ G I + S RT+++ ++S GD + Sbjct: 568 DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA 602 Score = 27.1 bits (60), Expect = 9.0 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 ++ VIG G++ + +AR A +LG V I YR Sbjct: 449 EVFVIGGGNTAMDAARTAKRLGGNVTIV--YR 478 >gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 557 Score = 31.2 bits (71), Expect = 0.54 Identities = 13/31 (41%), Positives = 21/31 (67%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 EYD+VV+G+G++G+ +A AA G + E Sbjct: 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVE 37 >gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional. Length = 384 Score = 31.3 bits (71), Expect = 0.56 Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 +YD+ V+G G G +A A+ G+ VA+ E Sbjct: 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIE 33 >gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 557 Score = 30.9 bits (70), Expect = 0.63 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRG 46 YD+VV+G+G G+ +A AA G + I E+ +VGG+ + G Sbjct: 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSG 49 >gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467 Score = 30.9 bits (70), Expect = 0.75 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 248 SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS----IFSLGD 303 S ++ D VI+A G P L G+ +D G IIT S Q+ IF+ GD Sbjct: 381 SEFVLPADVVIMAFGFQPHAMP-WLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGD 439 Query: 304 I 304 Sbjct: 440 A 440 >gnl|CDD|132421 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. Length = 419 Score = 30.8 bits (70), Expect = 0.81 Identities = 12/28 (42%), Positives = 19/28 (67%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAI 32 +D+++IG G +G+ A A+ GKK AI Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAI 28 >gnl|CDD|178411 PLN02815, PLN02815, L-aspartate oxidase. Length = 594 Score = 30.8 bits (70), Expect = 0.82 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAI---------CEEYRVGGTCVI 44 +D +VIG+G +G+R A A+ G VAI Y GG + Sbjct: 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAV 77 >gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. Length = 493 Score = 30.5 bits (69), Expect = 0.87 Identities = 15/36 (41%), Positives = 21/36 (58%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 YD +VIG+G G+ +A A G KV + E Y + G Sbjct: 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36 >gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional. Length = 392 Score = 30.7 bits (70), Expect = 0.94 Identities = 14/30 (46%), Positives = 19/30 (63%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 D+VV+GAG +G+ AR A G KV + E Sbjct: 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIE 33 >gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). Length = 388 Score = 30.5 bits (69), Expect = 0.96 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 YD+ VIG G SG +A A+ G + + E Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILLE 30 >gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase. Length = 447 Score = 30.5 bits (69), Expect = 0.99 Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVA 31 DLVV+G G +G+ A+ ++ G V Sbjct: 29 VDLVVVGGGPAGLAVAQQVSEAGLSVC 55 >gnl|CDD|185217 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional. Length = 517 Score = 30.5 bits (70), Expect = 1.00 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 YD++V+G G +G +A AA+ G + I E R GG Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAE-RFGG 246 >gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional. Length = 388 Score = 29.9 bits (68), Expect = 1.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 ++D+VV+G G G A AQ G +VA+ Sbjct: 5 KFDVVVVGGGLVGASLALALAQSGLRVALLA 35 >gnl|CDD|183509 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional. Length = 410 Score = 30.0 bits (68), Expect = 1.3 Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 + VIGAG +GV +A AQ G +V + + +R Sbjct: 4 IAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 Score = 28.5 bits (64), Expect = 3.6 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%) Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 E+D VV+ AG V S LAA LG +V + Y V G Sbjct: 244 TLEFDGVVVCAG---VGSRALAAMLGDRVNV---YPVKG 276 >gnl|CDD|181714 PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated. Length = 582 Score = 30.0 bits (68), Expect = 1.4 Identities = 11/20 (55%), Positives = 16/20 (80%) Query: 6 DLVVIGAGSSGVRSARLAAQ 25 DL +IGAG +G+R+A AA+ Sbjct: 6 DLAIIGAGGAGLRAAIAAAE 25 >gnl|CDD|183060 PRK11259, solA, N-methyltryptophan oxidase; Provisional. Length = 376 Score = 29.8 bits (68), Expect = 1.4 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--------GGTCVIR 45 YD++VIG GS G + A+ G +V + + G T +IR Sbjct: 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIR 52 >gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit; Provisional. Length = 657 Score = 29.6 bits (67), Expect = 1.8 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 1 MRYEY-DLVVIGAGSSGVRSARLAAQLG 27 M+ Y D +VIGAG +G+R A AAQ G Sbjct: 1 MKIIYTDALVIGAGLAGLRVAIAAAQRG 28 >gnl|CDD|162238 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. Length = 580 Score = 29.5 bits (66), Expect = 2.0 Identities = 11/23 (47%), Positives = 18/23 (78%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQ 25 ++D+ VIGAG +G+R+A AA+ Sbjct: 2 AQHDIAVIGAGGAGLRAAIAAAE 24 >gnl|CDD|184334 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing protein; Provisional. Length = 897 Score = 29.4 bits (66), Expect = 2.2 Identities = 14/38 (36%), Positives = 24/38 (63%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 +R + D++VIG G++G +A AA+ G V + E+ V Sbjct: 10 LRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 >gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated. Length = 466 Score = 29.1 bits (66), Expect = 2.3 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE----EYRVGGTCVIRG--CI---PKKLMF 54 D++VIG G++ + +A A + G V + E E+R G + R C+ P+ ++ Sbjct: 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLV 63 Query: 55 YASQYSEYFED 65 A E+++D Sbjct: 64 GAYPEEEFWQD 74 >gnl|CDD|178578 PLN03000, PLN03000, amine oxidase. Length = 881 Score = 29.2 bits (65), Expect = 2.3 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGG 40 +V++GAG SG+ +AR + G KV + E R GG Sbjct: 186 SVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 >gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. Length = 380 Score = 29.0 bits (65), Expect = 2.3 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--------GGTCVIRGCIPKKLMFYA 56 +D++V+GAG G +A A+ GKK + E++ + G + +IR P+ FY Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPED--FYT 58 Query: 57 SQYSEYFE 64 E ++ Sbjct: 59 PMMLECYQ 66 >gnl|CDD|179093 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit; Validated. Length = 416 Score = 29.0 bits (66), Expect = 2.4 Identities = 10/50 (20%), Positives = 25/50 (50%) Query: 213 QGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 Q L + G++ N ++ ++ E G++ + G ++ D ++A+G Sbjct: 205 QRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALG 254 >gnl|CDD|168735 PRK06932, PRK06932, glycerate dehydrogenase; Provisional. Length = 314 Score = 29.0 bits (65), Expect = 2.5 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTC 42 L V G G G RLA LG KV + E++ C Sbjct: 150 LGVFGKGCLGTEVGRLAQALGMKV-LYAEHKGASVC 184 >gnl|CDD|178516 PLN02928, PLN02928, oxidoreductase family protein. Length = 347 Score = 28.9 bits (65), Expect = 2.7 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 18/99 (18%) Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDT 231 I+G G I +E A L G K R + S+ GL N Sbjct: 163 FILGYGAIGIELAKRLRPFGVKLLATRR------SWTSEPEDGLL----------IPNGD 206 Query: 232 IESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGI 270 ++ +V E G + I + + D V+L T T GI Sbjct: 207 VDDLVDEKGGHEDIYEFAG--EADIVVLCCTLTKETAGI 243 >gnl|CDD|163322 TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. Length = 323 Score = 29.0 bits (66), Expect = 2.7 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%) Query: 13 GSSGVRSARLAAQLG 27 GSS SA+LAA+LG Sbjct: 165 GSSL-YSAQLAAELG 178 >gnl|CDD|171760 PRK12837, PRK12837, 3-ketosteroid-delta-1-dehydrogenase; Provisional. Length = 513 Score = 28.6 bits (64), Expect = 3.5 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRG 46 E D++V G+G GV A AA+ G VA+ E + GGT G Sbjct: 7 EVDVLVAGSGG-GVAGAYTAAREGLSVALVEATDKFGGTTAYSG 49 >gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed. Length = 584 Score = 28.6 bits (64), Expect = 3.5 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRG 46 E D++V+G+G G+ +A AA G + E+ GG+ + G Sbjct: 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSG 54 >gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis. Length = 357 Score = 28.3 bits (63), Expect = 3.9 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 7/36 (19%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGK----KVAICEE 35 + D+V++GAGS+G+ A +L K KVAI E+ Sbjct: 92 DTDVVIVGAGSAGLSCAY---ELSKNPNVKVAIIEQ 124 >gnl|CDD|179428 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 447 Score = 28.3 bits (64), Expect = 4.1 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 9 VIGAGSSGVRSARLAAQLGKKVAI 32 V+G SG +A+L +LG V + Sbjct: 10 VLGLAKSGYAAAKLLHKLGANVTV 33 >gnl|CDD|178300 PLN02697, PLN02697, lycopene epsilon cyclase. Length = 529 Score = 28.2 bits (63), Expect = 4.8 Identities = 13/27 (48%), Positives = 18/27 (66%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAI 32 DLVVIG G +G+ A +A+LG V + Sbjct: 110 DLVVIGCGPAGLALAAESAKLGLNVGL 136 >gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase. Length = 435 Score = 28.1 bits (63), Expect = 5.4 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGG 40 +VIG G +G+ +AR KV + E R+GG Sbjct: 4 IVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 >gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional. Length = 547 Score = 27.9 bits (63), Expect = 5.5 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 8/43 (18%) Query: 77 SFDWQSLITAQNKELSRLESFYHNRLESAG-----VEIFASKG 114 +W S+ T Q + R++ F H R+ AG V F ++G Sbjct: 279 ELEWVSVYTFQCR---RMDRFRHGRVLFAGDAAHQVSPFGARG 318 >gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional. Length = 351 Score = 27.7 bits (62), Expect = 5.8 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKK 29 YD+ +IG G +G + LA L K Sbjct: 1 HYDVAIIGLGPAG---SALARLLAGK 23 >gnl|CDD|162325 TIGR01373, soxB, sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. Length = 407 Score = 27.9 bits (62), Expect = 6.0 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 8/50 (16%) Query: 4 EYDLVVIGAGSSGVRSA-RLAAQLG-KKVAICEEYRVGG------TCVIR 45 YD++++G G G+ +A LA + G VA+ E+ +GG T ++R Sbjct: 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVR 79 >gnl|CDD|177962 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog. Length = 808 Score = 27.6 bits (61), Expect = 6.7 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGG 40 ++VV+GAG +G+ +AR +G KV + E R GG Sbjct: 240 NVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 >gnl|CDD|177829 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX. Length = 461 Score = 27.5 bits (61), Expect = 8.1 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGG 40 + VIGAG++G+ +AR + G V + E E +VGG Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47 >gnl|CDD|185578 PTZ00367, PTZ00367, squalene epoxidase; Provisional. Length = 567 Score = 27.1 bits (60), Expect = 8.7 Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 Y+YD++++G +G A+ ++ G+KV + E Sbjct: 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLE 63 >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional. Length = 265 Score = 27.3 bits (61), Expect = 8.8 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%) Query: 8 VVIGAGSSGV--RSARLAAQLGKKVAIC 33 VV G GSSG+ + L + G VAIC Sbjct: 12 VVTG-GSSGIGLATVELLLEAGASVAIC 38 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.136 0.395 Gapped Lambda K H 0.267 0.0849 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,252,457 Number of extensions: 460899 Number of successful extensions: 1301 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1105 Number of HSP's successfully gapped: 163 Length of query: 461 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 364 Effective length of database: 3,898,497 Effective search space: 1419052908 Effective search space used: 1419052908 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.3 bits)