HHsearch alignment for GI: 254781056 and conserved domain: cd00735
>cd00735 bacteriophage_T4-like_lysozyme Bacteriophage T4-like lysozymes hydrolyse the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1) as well as Dictyostelium.
Probab=99.93 E-value=6.1e-26 Score=174.71 Aligned_cols=127 Identities=29% Similarity=0.480 Sum_probs=106.8
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCEECCCCCCCC-------------------CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997538422000378888770234887773-------------------206886499999999999999999999
Q gi|254781056|r 32 LIKMLKEFEGLRLTAYRDIGGGAWTIGYGHTGSD-------------------VTEGMTITEKEAEDFLLKDASKSLNLL 92 (171)
Q Consensus 32 ~i~lik~~EG~~~~~Y~D~~~g~~TIGyG~t~~~-------------------v~~g~~iT~~~a~~ll~~di~~~~~~~ 92 (171)
T Consensus 2 L~e~ik~~EG~r~~~Y~Ds-~G~~TIGiGhlI~~~~~~~~~~~~~e~~~~~g~~~~~~~is~e~~~~lf~~Di~~a~~~~ 80 (164)
T cd00735 2 IAEMLRQDEGLRLKVYWDT-EGYPTIGIGHLITRKKTKDLNAINSELSKQIGREVTNGVITSEEVEALFEKDLAKAQRDI 80 (164)
T ss_pred HHHHHHHCCCEECCEEECC-CCCEEEEECEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7899998078124025669-998147655250465420000000012254186267887389999999999999999999
Q ss_pred HHH---CCCCCCCCHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHCCCHHHHHHHHH--HHHCCCCEECCHHHH
Q ss_conf 971---11013599999999876641368201027-16889998799899999999--974089833610699
Q gi|254781056|r 93 LES---SPALKSTSENRLVAVADFVFNLGIGNYNK-STFKQRVDAQDWEKAAEECK--KWTKAGGKVLPGLVK 159 (171)
Q Consensus 93 ~~~---~~~~~~l~~~~~~ALvs~ayN~G~~~~~~-s~~~~~l~~gd~~~a~~e~~--~w~~~ggk~~~GL~~ 159 (171)
T Consensus 81 ~~~~~~~~~~~~l~~~~q~~li~M~FnLG~~~l~kFkkm~~ai~~~d~~~Aa~EmldS~WakQtp~Ra~rl~~ 153 (164)
T cd00735 81 MSNPKLSPVYKKLNASRQMALENMVFQMGVGGVAKFKNSLRAMAAKDWKEAYKGLRDSLWANQTPGRASRVIS 153 (164)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCHHHHHHHHH
T ss_conf 9834227410129999998854135426764588899999999838999999999849553127499999999