RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781056|ref|YP_003065469.1| phage-related lysozyme
[Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>gnl|CDD|177423 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional.
          Length = 576

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 47/159 (29%), Positives = 68/159 (42%), Gaps = 35/159 (22%)

Query: 15  IGMNGDDKHN-KIPV---PNALI-KMLKEFEGLRLTAYRDIGGGAWTIGYGH-------- 61
           + +N DD    +IP    P+  I KML+  EG+RL  Y D  G   TIG GH        
Sbjct: 153 VAINPDDTPLDEIPPDDNPDFTIEKMLRRDEGIRLKVYWDSEGYP-TIGIGHLIIREKTR 211

Query: 62  ------------TGSDVTEGMTITEKEAEDFLLKDASKSLNLLLESS---PALKSTSENR 106
                        G +VT G  IT +EA     +D +K    +   S   P     + +R
Sbjct: 212 DMAQINKLLSKQVGREVTGG-RITAEEASKLFARDLAKVQRDISRHSKVGPVYNKLNRSR 270

Query: 107 LVAVADFVFNLGIGNYNKSTFKQRVDA---QDWEKAAEE 142
            +A+ +  F +G+G   K  FK  + A    DW+KA + 
Sbjct: 271 QMALENMAFQMGVGGVAK--FKNMLAAMLAGDWKKAYDA 307


>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
          Length = 591

 Score = 27.6 bits (61), Expect = 1.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 14/64 (21%)

Query: 29  PNALIKMLKEFE---GLRLTAYRDIGGGAWTIGYGHTGSDVTEGMTITEKEAEDFLLKDA 85
           P AL+K L  F     + L  YR         G G TG++V  G+ +  +E ++F  K  
Sbjct: 521 PGALMKFLDAFSPRWNISLFHYR---------GQGETGANVLVGIQVPPEEMQEF--KSR 569

Query: 86  SKSL 89
           + +L
Sbjct: 570 ANAL 573


>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
           Provisional.
          Length = 1328

 Score = 27.2 bits (60), Expect = 2.3
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 1   MCIINRIISFVKRMIGMNGDDKHNKIPVPNALIKMLKEFEGL 42
           M I++ I+  + +   +    KH  + +P  LI+ + EFE L
Sbjct: 315 MSIVDEIVEMILKRDSL--GKKHGIVLLPEGLIEFIPEFETL 354


>gnl|CDD|149734 pfam08767, CRM1_C, CRM1 C terminal.  CRM1 (also known as Exportin1)
           mediates the nuclear export of proteins bearing a
           leucine-rich nuclear export signal (NES). CRM1 forms a
           complex with the NES containing protein and the small
           GTPase Ran. This region forms an alpha helical structure
           formed by six helical hairpin motifs that are
           structurally similar to the HEAT repeat, but share
           little sequence similarity to the HEAT repeat.
          Length = 235

 Score = 27.2 bits (61), Expect = 2.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 7   IISFVKRMIGMNGDDKHNKIPVPNALIKMLKEFEG 41
           I +FV  +  ++ D K  K  + + LI+ LKEF G
Sbjct: 202 IKNFVVGLFNLSNDLKKFKGHLRDFLIQ-LKEFSG 235


>gnl|CDD|117609 pfam09043, Lys-AminoMut_A, D-Lysine 5,6-aminomutase alpha subunit. 
           Members of his family are involved in the 1,2
           rearrangement of the terminal amino group of DL-lysine
           and of L-beta-lysine, using adenosylcobalamin (AdoCbl)
           and pyridoxal-5'-phosphate as cofactors. The structure
           is predominantly a PLP-binding TIM barrel domain, with
           several additional alpha-helices and beta-strands at the
           N and C termini. These helices and strands form an
           intertwined accessory clamp structure that wraps around
           the sides of the TIM barrel and extends up toward the
           Ado ligand of the Cbl cofactor, providing most of the
           interactions observed between the protein and the Ado
           ligand of the Cbl, suggesting that its role is mainly in
           stabilising AdoCbl in the precatalytic resting state.
          Length = 509

 Score = 27.0 bits (60), Expect = 2.6
 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 11  VKRMIGMNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYGHTGSDVTEGM 70
           V R++G++G D+ N +P+PN ++  LK+  GL L A   +      +  G +  ++ E +
Sbjct: 38  VCRLLGIDGVDE-NGVPLPNVVVDHLKDKGGLGLGAAYWLANA--MVETGRSPQEIAEAV 94

Query: 71  TITEKE------AEDFLLKDASKSL 89
              E +      A++F +K A++++
Sbjct: 95  AAGELDLTSLPMADEFEIKAAARAI 119


>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
           Validated.
          Length = 574

 Score = 26.2 bits (58), Expect = 5.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 59  YGHTGSDVTEGMTITEKEAEDFLLKD 84
           YGH G  +T+   +  K  E F +KD
Sbjct: 513 YGHVGIRITDLKDLKPKLEEAFAMKD 538


>gnl|CDD|129414 TIGR00314, cdhA, CO dehydrogenase/acetyl-CoA synthase complex,
           epsilon subunit.  Acetyl-CoA decarbonylase/synthase
           (ACDS) is a multienzyme complex. Carbon monoxide
           dehydrogenase is a synonym. The ACDS complex carries out
           an unusual reaction involving the reversible cleavage
           and synthesis of acetyl-CoA in methanogens. The model
           contains the prosite signature for 4Fe-4S ferredoxins
           [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462
           of the model.
          Length = 784

 Score = 26.0 bits (57), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 137 EKAAEECKKWTKAGGKVLPGLVKRRDAEVKLL 168
           E   EE ++W   G   +PG++  R  + KLL
Sbjct: 21  EIVEEEEEEWEPMGPTPMPGILTLRKWDFKLL 52


>gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional.
          Length = 429

 Score = 25.2 bits (55), Expect = 8.0
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 15  IGMNGDDKHNKIPVPNALIKMLKEFEGLRLT 45
           I + GD K+ +    ++L+K+L  + GL+ T
Sbjct: 244 IALVGDLKYGR--TVHSLVKLLALYRGLKFT 272


>gnl|CDD|149353 pfam08241, Methyltransf_11, Methyltransferase domain.  Members of
           this family are SAM dependent methyltransferases.
          Length = 95

 Score = 24.9 bits (55), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 134 QDWEKAAEECKKWTKAGGKVL 154
            D E+A  E  +  K GGK++
Sbjct: 74  PDPERALREIARVLKPGGKLV 94


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0701    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,752,277
Number of extensions: 163666
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 14
Length of query: 171
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,114,577
Effective search space: 345624468
Effective search space used: 345624468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)