Query gi|254781057|ref|YP_003065470.1| hypothetical protein CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 102 out of 399 Neff 4.1 Searched_HMMs 33803 Date Wed Jun 1 21:05:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781057.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1xjt_A Lysozyme; open conform 99.6 1E-15 3E-20 96.3 3.4 40 3-42 26-65 (150) 2 >2anv_A Lysozyme; direct metho 99.6 1.1E-15 3.2E-20 96.2 3.3 38 5-42 2-39 (146) 3 >3eml_A Human adenosine A2A re 99.5 1.9E-15 5.5E-20 95.1 2.9 32 10-41 2-33 (82) 4 >2rh1_A Beta-2-adrenergic rece 99.5 2.6E-15 7.7E-20 94.4 2.9 32 10-41 1-32 (81) 5 >1xju_A Lysozyme; secreted ina 99.5 8.9E-16 2.6E-20 96.6 -1.3 37 6-42 1-37 (163) 6 >1wth_A Protein GP5, tail-asso 99.4 3.4E-14 1E-18 89.1 1.3 39 3-41 2-40 (188) 7 >3hde_A Lysozyme; antimicrobia 99.4 2.2E-14 6.4E-19 90.0 -0.4 39 4-42 20-58 (165) 8 >1swy_A Lysozyme; RB+ binding 99.3 7.2E-13 2.1E-17 82.8 2.7 32 10-41 2-33 (164) 9 >2qb0_B Telsam domain - lysozy 98.6 6.9E-09 2E-13 63.8 1.3 19 23-41 1-19 (68) 10 >2o4w_A Lysozyme; protein fold 98.5 4.7E-08 1.4E-12 59.9 1.4 21 21-41 2-22 (171) No 1 >>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} (A:1-118,A:160-191) Probab=99.57 E-value=1e-15 Score=96.31 Aligned_cols=40 Identities=30% Similarity=0.549 Sum_probs=37.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCC Q ss_conf 5303439999999975285124303789970662026666 Q gi|254781057|r 3 GSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS 42 (43) Q Consensus 3 g~~kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~ 42 (43) +.+++|+++++||+.|||++++||.|+.|+||||||||.. T Consensus 26 ~~~~~S~~~i~lIk~~EG~~~~~Y~D~~Gv~TIGyGhT~~ 65 (150) T 1xjt_A 26 GNVRTNQAGLELIGNAEGCRRDPYXCPAGVWTDGIGNTHG 65 (150) T ss_dssp TCCCCCHHHHHHHHHHHCCEEEEEECSSCCEEEETTBCSS T ss_pred CCCCCCHHHHHHHHHHHCCEEEEEECCCCCCEEEECCCCC T ss_conf 7562389999999997488305677899996673062179 No 2 >>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A (A:) Probab=99.57 E-value=1.1e-15 Score=96.22 Aligned_cols=38 Identities=45% Similarity=0.577 Sum_probs=35.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCC Q ss_conf 03439999999975285124303789970662026666 Q gi|254781057|r 5 SKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS 42 (43) Q Consensus 5 ~kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~ 42 (43) +++|+++++||+.|||++++||+|+.|+||||||||.+ T Consensus 2 l~~s~~~~~li~~~EG~~~~~Y~D~~G~~TiGyG~t~~ 39 (146) T 2anv_A 2 MQISSNGITRLKREEGERLKAYSDSRGIPTIGVGHTGK 39 (146) T ss_dssp CCCCHHHHHHHHHHHCCEEEEEECTTSCEEEETTBCSC T ss_pred CCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCC T ss_conf 66579999999986298405688899984771084426 No 3 >>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} (A:223-304) Probab=99.54 E-value=1.9e-15 Score=95.06 Aligned_cols=32 Identities=41% Similarity=0.706 Sum_probs=30.0 Q ss_pred HHHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 99999997528512430378997066202666 Q gi|254781057|r 10 ALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 10 a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) .+++|||.|||||++||+|++|+||||||||. T Consensus 2 ~~i~lik~~EG~rl~~Y~D~~G~~TIGyGht~ 33 (82) T 3eml_A 2 NIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 33 (82) T ss_dssp CHHHHHHHHTCCEEEEEECTTSCEEEETTEEE T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 77642012100023334566677765556666 No 4 >>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3d4s_A* (A:238-318) Probab=99.53 E-value=2.6e-15 Score=94.39 Aligned_cols=32 Identities=41% Similarity=0.706 Sum_probs=30.2 Q ss_pred HHHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 99999997528512430378997066202666 Q gi|254781057|r 10 ALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 10 a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) .+++|||.|||||++||+|++|+||||||||. T Consensus 1 ~gi~li~~~EG~r~~~Y~D~~G~~TIGyGht~ 32 (81) T 2rh1_A 1 NIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 32 (81) T ss_dssp SHHHHHHHHTCCEEEEEECTTSCEEEETTEEE T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 11101234544455556566666555666555 No 5 >>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} (A:) Probab=99.50 E-value=8.9e-16 Score=96.61 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCC Q ss_conf 3439999999975285124303789970662026666 Q gi|254781057|r 6 KILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS 42 (43) Q Consensus 6 kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~ 42 (43) |||+++++|||.|||++++||+|++|+||||||||.. T Consensus 1 ~~S~~~~~lik~~EG~~~~~Y~D~~G~~TiGyG~t~~ 37 (163) T 1xju_A 1 RTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGNTHG 37 (163) T ss_dssp CCCHHHHHHHCCHHHHHHCGGGSCGGGCCTTCCC--C T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCC T ss_conf 9699999999987188434577899983562287014 No 6 >>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded beta-helix, OB fold, pseudohexamer, T4 tail lysozyme, GP5-GP27; 2.80A {Enterobacteria phage T4} PDB: 2z6b_A 1k28_A 1pdl_A (A:167-354) Probab=99.41 E-value=3.4e-14 Score=89.10 Aligned_cols=39 Identities=36% Similarity=0.469 Sum_probs=36.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 530343999999997528512430378997066202666 Q gi|254781057|r 3 GSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 3 g~~kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) .++++|+++++||+.|||+++++|+|+.|+||||||||- T Consensus 2 ~~~~~s~~~~~~i~~~EG~~~~~Y~D~~G~~TIG~G~~~ 40 (188) T 1wth_A 2 TDDNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLI 40 (188) T ss_dssp CCSSCSCCHHHHHHHHHCCEEEEEECTTSCEEEETTEES T ss_pred CCCCCCCCHHHHHCCCCCCEEEEEECCCCCCEECCCCEE T ss_conf 777765223332022445134541025896100235361 No 7 >>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21} (A:) Probab=99.40 E-value=2.2e-14 Score=90.00 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=36.7 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCC Q ss_conf 303439999999975285124303789970662026666 Q gi|254781057|r 4 SSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS 42 (43) Q Consensus 4 ~~kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~ 42 (43) .+++|++++++|+.|||++++||.|+.|+||||||||+. T Consensus 20 ~~~~s~~~~~~i~~~EG~~~~~Y~D~~G~~TIG~G~t~~ 58 (165) T 3hde_A 20 IASVLITGPSGNDGLEGVSYIPYKDIVGVWTVCHGHTGK 58 (165) T ss_dssp HHHHHHHCTTSSSSSSCCEEEEEECTTSCEEEETTBCST T ss_pred HHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEECCCCC T ss_conf 999998751246676776513651899893784797787 No 8 >>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} (A:) Probab=99.31 E-value=7.2e-13 Score=82.77 Aligned_cols=32 Identities=41% Similarity=0.706 Sum_probs=30.2 Q ss_pred HHHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 99999997528512430378997066202666 Q gi|254781057|r 10 ALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 10 a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) .+++||+.||||+++||+||.|+||||||||. T Consensus 2 ~~~~li~~~EG~~~~~Y~D~~G~~TiGyG~t~ 33 (164) T 1swy_A 2 NIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 33 (164) T ss_dssp CHHHHHHHHHCCEEEEEECTTSCEEEETTEEC T ss_pred CHHHHHHHHCCCCCEEEECCCCCEEEEECCCC T ss_conf 88999999628565567888988478779043 No 9 >>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli} (B:94-161) Probab=98.64 E-value=6.9e-09 Score=63.85 Aligned_cols=19 Identities=47% Similarity=0.791 Sum_probs=17.6 Q ss_pred CCCEECCCCCEEEECCCCC Q ss_conf 2430378997066202666 Q gi|254781057|r 23 LTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 23 ~~aY~d~~G~wTIGyGHTg 41 (43) |++|+|++|+||||||||. T Consensus 1 L~~Y~D~~G~~TIGYGH~~ 19 (68) T 2qb0_B 1 LKIYKDTEGYYTIGIGHLL 19 (68) T ss_dssp EEEEECSSSCEEEETTEEE T ss_pred CCEEECCCCCCEECCCCCC T ss_conf 7134168998024558765 No 10 >>2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4} (A:) Probab=98.45 E-value=4.7e-08 Score=59.90 Aligned_cols=21 Identities=48% Similarity=0.822 Sum_probs=19.8 Q ss_pred CCCCCEECCCCCEEEECCCCC Q ss_conf 512430378997066202666 Q gi|254781057|r 21 LKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 21 ~r~~aY~d~~G~wTIGyGHTg 41 (43) +|++||+|+.|+||||||||- T Consensus 2 ~rl~~Y~D~~G~~TIG~G~t~ 22 (171) T 2o4w_A 2 LRLKIYKDTEGYYTIGIGHLL 22 (171) T ss_dssp CCCBCEECTTSCEEETTTEEC T ss_pred CCCEEEECCCCCCEEEECCCC T ss_conf 777776789999468789510 Done!