Query gi|254781057|ref|YP_003065470.1| hypothetical protein CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 102 out of 399 Neff 4.1 Searched_HMMs 13730 Date Wed Jun 1 11:11:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781057.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1xjua_ d.2.1.3 (A:) Endolysin 99.6 1.2E-17 8.5E-22 103.7 -1.4 36 6-41 1-36 (158) 2 d1swya_ d.2.1.3 (A:) Phage T4 99.3 1.6E-13 1.1E-17 84.1 2.5 31 11-41 3-33 (164) 3 d1k28a3 d.2.1.3 (A:130-345) Ta 99.2 1.6E-12 1.2E-16 79.2 2.3 31 10-40 46-76 (216) 4 d1u84a_ a.230.1.1 (A:) hypothe 11.4 66 0.0048 14.5 2.4 21 5-25 2-22 (81) 5 d1lwha1 b.71.1.1 (A:392-441) 4 10.7 25 0.0019 16.5 -0.0 12 17-28 36-47 (50) 6 d1nvpd2 b.56.1.1 (D:54-99) Sma 8.8 30 0.0022 16.1 -0.3 17 18-35 5-21 (46) 7 d1i7qa_ d.161.1.1 (A:) Anthran 8.6 50 0.0037 15.1 0.8 31 1-33 423-453 (517) 8 d1qdla_ d.161.1.1 (A:) Anthran 7.3 62 0.0045 14.7 0.8 30 1-32 335-364 (422) 9 d1k0ga_ d.161.1.1 (A:) P-amino 6.4 82 0.006 14.1 1.0 31 1-33 367-397 (453) 10 d3bzna1 d.161.1.1 (A:2-429) Me 6.0 91 0.0066 13.9 1.1 32 1-34 344-375 (428) No 1 >d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]} Probab=99.61 E-value=1.2e-17 Score=103.70 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=34.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 343999999997528512430378997066202666 Q gi|254781057|r 6 KILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 6 kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) |+|+++|+|||.|||+|++||+||+|+||||||||- T Consensus 1 k~s~~gi~lIk~~EG~~~~~Y~D~~G~~TIGyG~t~ 36 (158) T d1xjua_ 1 RTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGNTH 36 (158) T ss_dssp CCCHHHHHHHCCHHHHHHCGGGSCGGGCCTTCCC-- T ss_pred CCCHHHHHHHHHHHCCEEEEEECCCCCEEECCCCEE T ss_conf 979899999998518820568889998057247032 No 2 >d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]} Probab=99.33 E-value=1.6e-13 Score=84.08 Aligned_cols=31 Identities=42% Similarity=0.732 Sum_probs=29.2 Q ss_pred HHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 9999997528512430378997066202666 Q gi|254781057|r 11 LIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 11 ~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) .+++||.|||+|++||+|++|+||||||||- T Consensus 3 l~~~ik~~EG~~~~~Y~D~~G~~TIGyGh~~ 33 (164) T d1swya_ 3 IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 33 (164) T ss_dssp HHHHHHHHHCCEEEEEECTTSCEEEETTEEC T ss_pred HHHHHHHHCCCCCEEEECCCCCEEEEECCCC T ss_conf 8999999628676444688988378679412 No 3 >d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]} Probab=99.21 E-value=1.6e-12 Score=79.23 Aligned_cols=31 Identities=45% Similarity=0.714 Sum_probs=28.8 Q ss_pred HHHHHHHHHCCCCCCCEECCCCCEEEECCCC Q ss_conf 9999999752851243037899706620266 Q gi|254781057|r 10 ALIEITKRYEGLKLTAYRDPGGTWTIGYGHS 40 (43) Q Consensus 10 a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHT 40 (43) ...++||.+||+|+++|+|+.|+|||||||. T Consensus 46 tl~e~Ik~~EG~r~~~Y~Ds~G~~TIG~GHl 76 (216) T d1k28a3 46 SMAEMLRRDEGLRLKVYWDTEGYPTIGIGHL 76 (216) T ss_dssp CHHHHHHHHHCCEEEEEECSSSCEEEETTEE T ss_pred HHHHHHHHHCCCCCEEEECCCCCCEEEECCE T ss_conf 2999989827835655789898946878942 No 4 >d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]} Probab=11.41 E-value=66 Score=14.53 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCC Q ss_conf 034399999999752851243 Q gi|254781057|r 5 SKILNALIEITKRYEGLKLTA 25 (43) Q Consensus 5 ~kis~a~i~lIk~~EG~r~~a 25 (43) .+++.+.+++|+.|..|+.-+ T Consensus 2 q~~n~~m~~~i~~WDPF~~G~ 22 (81) T d1u84a_ 2 QQLNRLLLEWIGAWDPFGLGK 22 (81) T ss_dssp CHHHHHHHHHHHHHCTTSSCG T ss_pred CHHHHHHHHHHHCCCCCCCCC T ss_conf 278999999998069744584 No 5 >d1lwha1 b.71.1.1 (A:392-441) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Probab=10.73 E-value=25 Score=16.50 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=9.6 Q ss_pred HHCCCCCCCEEC Q ss_conf 752851243037 Q gi|254781057|r 17 RYEGLKLTAYRD 28 (43) Q Consensus 17 ~~EG~r~~aY~d 28 (43) -|||.|.+||.- T Consensus 36 vfegv~~~py~t 47 (50) T d1lwha1 36 VFEGVKMKPYKT 47 (50) T ss_dssp EETTEECCTTCE T ss_pred EEEEEEECCCEE T ss_conf 997777112221 No 6 >d1nvpd2 b.56.1.1 (D:54-99) Small chain TOA2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=8.76 E-value=30 Score=16.13 Aligned_cols=17 Identities=35% Similarity=0.792 Sum_probs=14.1 Q ss_pred HCCCCCCCEECCCCCEEE Q ss_conf 528512430378997066 Q gi|254781057|r 18 YEGLKLTAYRDPGGTWTI 35 (43) Q Consensus 18 ~EG~r~~aY~d~~G~wTI 35 (43) |.| +|..||-..++||. T Consensus 5 fKG-~L~tYRfCDnVWTF 21 (46) T d1nvpd2 5 FRG-SLNTYRFCDNVWTF 21 (46) T ss_dssp EEE-EEEEEEEETTEEEE T ss_pred EEE-EEEEECCCCCEEEE T ss_conf 978-86011167858789 No 7 >d1i7qa_ d.161.1.1 (A:) Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE {Serratia marcescens [TaxId: 615]} Probab=8.64 E-value=50 Score=15.09 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=22.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCE Q ss_conf 985303439999999975285124303789970 Q gi|254781057|r 1 MNGSSKILNALIEITKRYEGLKLTAYRDPGGTW 33 (43) Q Consensus 1 m~g~~kis~a~i~lIk~~EG~r~~aY~d~~G~w 33 (43) |.|..| ..++++|.++|......|--+.|.+ T Consensus 423 v~G~Pk--~~A~~~I~~~E~~~Rg~Y~G~vG~~ 453 (517) T d1i7qa_ 423 LSGAPK--VRAMQLIAALRSTRRGSYGGRVGYF 453 (517) T ss_dssp GSEESH--HHHHHHHHHHHCBCCTTTTSEEEEE T ss_pred ECCCCH--HHHHHHHHHHCCCCCCCEEEEEEEE T ss_conf 478988--9999999985599887614799999 No 8 >d1qdla_ d.161.1.1 (A:) Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=7.32 E-value=62 Score=14.66 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=22.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCC Q ss_conf 98530343999999997528512430378997 Q gi|254781057|r 1 MNGSSKILNALIEITKRYEGLKLTAYRDPGGT 32 (43) Q Consensus 1 m~g~~kis~a~i~lIk~~EG~r~~aY~d~~G~ 32 (43) |.|..| ..++++|.++|.+....|--+.|. T Consensus 335 v~G~Pk--~~a~~~I~~~E~~~Rg~Y~G~~G~ 364 (422) T d1qdla_ 335 VSGAPK--PMAMNIIETLEEYKRGPYAGAVGF 364 (422) T ss_dssp GSEESH--HHHHHHHHHHSSSBCTTTTEEEEE T ss_pred CCCCCH--HHHHHHHHHHCCCCCCCCEEEEEE T ss_conf 789987--999999998659998670589999 No 9 >d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I {Escherichia coli [TaxId: 562]} Probab=6.37 E-value=82 Score=14.08 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=22.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCE Q ss_conf 985303439999999975285124303789970 Q gi|254781057|r 1 MNGSSKILNALIEITKRYEGLKLTAYRDPGGTW 33 (43) Q Consensus 1 m~g~~kis~a~i~lIk~~EG~r~~aY~d~~G~w 33 (43) |.|..| ..++++|.++|......|--+.|.+ T Consensus 367 v~G~Pk--~~a~~~I~~~E~~~Rg~Y~G~~G~~ 397 (453) T d1k0ga_ 367 ITGAPK--VRAMEIIDELEPQRRNAWCGSIGYL 397 (453) T ss_dssp GTEESH--HHHHHHHHHHSSBCCTTTTSEEEEE T ss_pred CCCCCH--HHHHHHHHHHCCCCCCCEEEEEEEE T ss_conf 676977--9999999985499987514699999 No 10 >d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate synthase MenF {Escherichia coli [TaxId: 562]} Probab=5.98 E-value=91 Score=13.87 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=23.6 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCEE Q ss_conf 9853034399999999752851243037899706 Q gi|254781057|r 1 MNGSSKILNALIEITKRYEGLKLTAYRDPGGTWT 34 (43) Q Consensus 1 m~g~~kis~a~i~lIk~~EG~r~~aY~d~~G~wT 34 (43) |.|..| +.++++|.++|++....|--+.|... T Consensus 344 V~G~Pk--~~A~~~I~~~E~~~Rg~YaG~iG~~~ 375 (428) T d3bzna1 344 VAGLPR--DLARQFIARHEPFTREWYAGSAGYLS 375 (428) T ss_dssp TSEESH--HHHHHHHHHHCSSCCTTTTSEEEEEC T ss_pred CCCCCH--HHHHHHHHHHCCCCCCCEEEEEEEEE T ss_conf 678987--99999999866999986278999997 Done!