RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781057|ref|YP_003065470.1| hypothetical protein
CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>gnl|CDD|177423 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional.
          Length = 576

 Score = 27.4 bits (61), Expect = 0.79
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 13  EITKRYEGLKLTAYRDPGGTWTIGYGH 39
           ++ +R EG++L  Y D  G  TIG GH
Sbjct: 177 KMLRRDEGIRLKVYWDSEGYPTIGIGH 203


>gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
           Validated.
          Length = 633

 Score = 25.3 bits (56), Expect = 3.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 9   NALIEITKRYEGLKLTAYRDPGGTWTI 35
             L++I+K+    KLTA    GG +TI
Sbjct: 527 RELMDISKKARDGKLTAGDMQGGCFTI 553


>gnl|CDD|162702 TIGR02099, TIGR02099, conserved hypothetical protein TIGR02099.
           This model describes a family of long proteins, over
           1250 amino acids in length and present in the
           Proteobacteria. The degree of sequence similarity is low
           between sequences from different genera. Apparent
           membrane-spanning regions at the N-terminus and
           C-terminus suggest the protein is inserted into (or
           exported through) the membrane.
          Length = 1260

 Score = 23.9 bits (52), Expect = 9.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 17  RYEGLKLTAYRDPGGTWTIGYGHSGS 42
           R +GL LT  RD  G W +G     S
Sbjct: 108 RVDGLALTLRRDDDGGWAVGGNPLTS 133


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 677,963
Number of extensions: 23265
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 6
Length of query: 43
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,627,137
Effective search space: 146305562
Effective search space used: 146305562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.1 bits)