RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781057|ref|YP_003065470.1| hypothetical protein
CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera;
          caffeine, GPCR, membrane protein, LCP, mesophase,
          structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo
          sapiens} (A:223-304)
          Length = 82

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 11 LIEITKRYEGLKLTAYRDPGGTWTIGYGH 39
          + E+ +  EGL+L  Y+D  G +TIG GH
Sbjct: 3  IFEMLRIDEGLRLKIYKDTEGYYTIGIGH 31


>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A
          {Enterobacteria phage P1} (A:1-118,A:160-191)
          Length = 150

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 2  NGSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHS 40
          NG+ +   A +E+    EG +   Y  P G WT G G++
Sbjct: 25 NGNVRTNQAGLELIGNAEGCRRDPYXCPAGVWTDGIGNT 63


>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM,
          fusion, lipidic cubic phase, lipidic, mesophase,
          cholesterol, membrane protein; HET: MAL CAU CLR PLM
          12P; 2.40A {Homo sapiens} PDB: 3d4s_A* (A:238-318)
          Length = 81

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 12 IEITKRYEGLKLTAYRDPGGTWTIGYGH 39
           E+ +  EGL+L  Y+D  G +TIG GH
Sbjct: 3  FEMLRIDEGLRLKIYKDTEGYYTIGIGH 30


>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A
          {Enterobacteria phage P1} (A:)
          Length = 163

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 6  KILNALIEITKRYEGLKLTAYRDPGGTWTIGYGH 39
          +   A +E+    EG +   Y  P G WT G G+
Sbjct: 1  RTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGN 34


>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded
          beta-helix, OB fold, pseudohexamer, T4 tail lysozyme,
          GP5-GP27; 2.80A {Enterobacteria phage T4} PDB: 2z6b_A
          1k28_A 1pdl_A (A:167-354)
          Length = 188

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 4  SSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGH 39
                ++ E+ +R EGL+L  Y D  G  TIG GH
Sbjct: 3  DDNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGH 38


>2anv_A Lysozyme; direct methods, lanthinide binding sites,
          hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
          (A:)
          Length = 146

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 6  KILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHS 40
          +I +  I   KR EG +L AY D  G  TIG GH+
Sbjct: 3  QISSNGITRLKREEGERLKAYSDSRGIPTIGVGHT 37


>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme,
          glycosidase, hydrolase, late protein; 1.95A
          {Enterobacteria phage P21} (A:)
          Length = 165

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 3  GSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGH 39
            + +L          EG+    Y+D  G WT+ +GH
Sbjct: 19 AIASVLITGPSGNDGLEGVSYIPYKDIVGVWTVCHGH 55


>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods,
          hydrolase; 1.06A {Enterobacteria phage T4} (A:)
          Length = 164

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 12 IEITKRYEGLKLTAYRDPGGTWTIGYGH 39
           E+ +  EGL+L  Y+D  G +TIG GH
Sbjct: 4  FEMLRIDEGLRLKIYKDTEGYYTIGIGH 31


>2o4w_A Lysozyme; protein folding, protein stability, protein
          engineering, hydrolase; 1.90A {Enterobacteria phage T4}
          (A:)
          Length = 171

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 21 LKLTAYRDPGGTWTIGYGH 39
          L+L  Y+D  G +TIG GH
Sbjct: 2  LRLKIYKDTEGYYTIGIGH 20


>2qb0_B Telsam domain - lysozyme chimera; helical polymer,
          hydrolase regulator; 2.56A {Escherichia coli}
          (B:94-161)
          Length = 68

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 23 LTAYRDPGGTWTIGYGH 39
          L  Y+D  G +TIG GH
Sbjct: 1  LKIYKDTEGYYTIGIGH 17


>1ecm_A Endo-oxabicyclic transition state analogue; P-protein,
           chorismate mutase domain; HET: TSA; 2.20A {Escherichia
           coli} (A:)
          Length = 109

 Score = 29.0 bits (65), Expect = 0.23
 Identities = 3/29 (10%), Positives = 11/29 (37%)

Query: 6   KILNALIEITKRYEGLKLTAYRDPGGTWT 34
           ++   +IE +   +   L  + +     +
Sbjct: 75  RLFQLIIEDSVLTQQALLQQHLNKINPHS 103


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 343,470
Number of extensions: 9403
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 11
Length of query: 43
Length of database: 4,956,049
Length adjustment: 15
Effective length of query: 28
Effective length of database: 4,448,974
Effective search space: 124571272
Effective search space used: 124571272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.5 bits)