RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781057|ref|YP_003065470.1| hypothetical protein
CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A
          {Enterobacteria phage P1} SCOP: d.2.1.3
          Length = 191

 Score = 54.0 bits (129), Expect = 8e-09
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 2  NGSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGH 39
          NG+ +   A +E+    EG +   Y  P G WT G G+
Sbjct: 25 NGNVRTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGN 62


>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase;
          1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB:
          1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A
          2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A
          1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
          Length = 164

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 11 LIEITKRYEGLKLTAYRDPGGTWTIGYGH 39
          + E+ +  EGL+L  Y+D  G +TIG GH
Sbjct: 3  IFEMLRIDEGLRLKIYKDTEGYYTIGIGH 31


>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A
          {Enterobacteria phage P1} SCOP: d.2.1.3
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 6  KILNALIEITKRYEGLKLTAYRDPGGTWTIGYGH 39
          +   A +E+    EG +   Y  P G WT G G+
Sbjct: 1  RTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGN 34


>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase;
          1.04A {Enterobacteria phage P22} PDB: 2anx_A
          Length = 146

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 17/37 (45%), Positives = 21/37 (56%)

Query: 6  KILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS 42
          +I +  I   KR EG +L AY D  G  TIG GH+G 
Sbjct: 3  QISSNGITRLKREEGERLKAYSDSRGIPTIGVGHTGK 39


>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase,
          hydrolase, late protein; 1.95A {Enterobacteria phage
          P21}
          Length = 165

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 16 KRYEGLKLTAYRDPGGTWTIGYGHSGS 42
             EG+    Y+D  G WT+ +GH+G 
Sbjct: 32 DGLEGVSYIPYKDIVGVWTVCHGHTGK 58


>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase,
          hydrolase, late protein; 1.70A {Enterobacteria phage
          P21}
          Length = 140

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 15 TKRYEGLKLTAYRDPGGTWTIGYGHSGS 42
              EG+    Y+D  G WT+ +GH+G 
Sbjct: 6  NDGLEGVSYIPYKDIVGVWTVCHGHTGK 33


>2o4w_A Lysozyme; protein folding, protein stability, protein
          engineering, hydrolase; 1.90A {Enterobacteria phage T4}
          Length = 171

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 21 LKLTAYRDPGGTWTIGYGH 39
          L+L  Y+D  G +TIG GH
Sbjct: 2  LRLKIYKDTEGYYTIGIGH 20


>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase
           regulator; 2.56A {Escherichia coli}
          Length = 241

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 5   SKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGH 39
            +    + E+ +  EGL+L  Y+D  G +TIG GH
Sbjct: 76  KQAGPNIFEMLRIDEGLRLKIYKDTEGYYTIGIGH 110


>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded beta-helix,
           OB fold, pseudohexamer, T4 tail lysozyme, GP5-GP27;
           2.80A {Enterobacteria phage T4} PDB: 2z6b_A 1k28_A
           1pdl_A
          Length = 584

 Score = 30.2 bits (67), Expect = 0.13
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 16  KRYEGLKLTAYRDPGGTWTIGYGH 39
           +R EGL+L  Y D  G  TIG GH
Sbjct: 181 RRDEGLRLKVYWDTEGYPTIGIGH 204


>3nf5_A Nucleoporin NUP100; nuclear pore complex, structural genomics,
           PSI-2, PR structure initiative, NEW YORK structural
           genomix research consortium; 1.94A {Candida glabrata}
          Length = 164

 Score = 23.7 bits (51), Expect = 9.6
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 2   NGSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41
           + + +I+    E  K+       +Y    GT+     H+ 
Sbjct: 117 DPNHRIMERYSEKLKKIPHTHFESYDPASGTYCFTVDHAL 156


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 393,990
Number of extensions: 11064
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 10
Length of query: 43
Length of database: 5,693,230
Length adjustment: 16
Effective length of query: 27
Effective length of database: 5,305,326
Effective search space: 143243802
Effective search space used: 143243802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)