BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781057|ref|YP_003065470.1| hypothetical protein CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62] (43 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781057|ref|YP_003065470.1| hypothetical protein CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62] Length = 43 Score = 90.1 bits (222), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 43/43 (100%), Positives = 43/43 (100%) Query: 1 MNGSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGSC 43 MNGSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGSC Sbjct: 1 MNGSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGSC 43 >gi|254781056|ref|YP_003065469.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 56.2 bits (134), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 6/48 (12%) Query: 1 MNGSSK-----ILNALIEITKRYEGLKLTAYRDP-GGTWTIGYGHSGS 42 MNG K + NALI++ K +EGL+LTAYRD GG WTIGYGH+GS Sbjct: 17 MNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYGHTGS 64 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.136 0.424 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,933 Number of Sequences: 1233 Number of extensions: 676 Number of successful extensions: 3 Number of sequences better than 100.0: 2 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2 length of query: 43 length of database: 328,796 effective HSP length: 16 effective length of query: 27 effective length of database: 309,068 effective search space: 8344836 effective search space used: 8344836 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.1 bits) S2: 31 (16.5 bits)