RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781058|ref|YP_003065471.1| phage-related lysozyme
[Candidatus Liberibacter asiaticus str. psy62]
(102 letters)
>gnl|CDD|149397 pfam08324, PUL, PUL domain. The PUL (PLAP, Ufd3p and Lub1p) domain
is a novel alpha-helical Ub-associated domain. It
directly binds to Cdc48, a chaperone-like AAA ATPase
that collects ubiquitylated substrates.
Length = 264
Score = 27.0 bits (60), Expect = 1.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 16 LRSHLDLLLDASPTLKSASENR--LVAVADFVFNLGIGNYNKS 56
L SH D +LD LKS+ N+ +A+A + NL + +
Sbjct: 146 LLSHDDSILDLISVLKSSLLNKNLQIALATLLLNLAVLLLENN 188
>gnl|CDD|181621 PRK09041, motB, flagellar motor protein MotB; Validated.
Length = 317
Score = 26.4 bits (59), Expect = 1.7
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 5 AKEAEDLLLSDLRSHLDLLLDASPTLK 31
+ E L L+ LD ++++P L+
Sbjct: 111 KERREQERLEKLKQELDQAIESNPKLR 137
>gnl|CDD|184929 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 25.9 bits (57), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 7 EAEDLLLSDLRSHLDLLLDASPTLKSASENRLV 39
+A +DL+ HL LLL A + AS RLV
Sbjct: 318 QAAAADAADLQRHLTLLLRAEGEMAHASFPRLV 350
>gnl|CDD|183314 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.
Length = 389
Score = 25.2 bits (56), Expect = 3.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 66 DWEKAAEECKKWTKAGGQSLR 86
DW+KA + ++ K GG SLR
Sbjct: 156 DWQKAIDVAERLEKLGGDSLR 176
>gnl|CDD|172342 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional.
Length = 170
Score = 24.8 bits (54), Expect = 5.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 78 TKAGGQSLRGIENRRAEGAT 97
T +GG +L GIE RA GA
Sbjct: 114 TTSGGSALYGIEQLRAAGAV 133
>gnl|CDD|151125 pfam10596, U6-snRNA_bdg, U6-snRNA interacting domain of PrP8.
This domain incorporates the interacting site for the
U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of
the spliceosome, and is the prime candidate for the
role of cofactor for the spliceosome's RNA core. The
essential spliceosomal protein Prp8 interacts with U5
and U6 snRNAs and with specific pre-mRNA sequences that
participate in catalysis. This close association with
crucial RNA sequences, together with extensive genetic
evidence, suggests that Prp8 could directly affect the
function of the catalytic core, perhaps acting as a
splicing cofactor.
Length = 160
Score = 24.4 bits (53), Expect = 6.9
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 67 WEKAAE-----ECKKWTKAGGQSLRGIENRR 92
WEKA+ + KK T A L I NRR
Sbjct: 62 WEKASGFEESMKFKKLTNAQRSGLSQIPNRR 92
>gnl|CDD|184028 PRK13398, PRK13398, 3-deoxy-7-phosphoheptulonate synthase;
Provisional.
Length = 266
Score = 24.3 bits (53), Expect = 7.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 34 SENRLVAVADFVFNLGIGNYNKSTFKQRVDAQDWEKAAEECKKWTKAGGQ 83
SE ++V VA+ + LG+ FK R ++ EE K K G
Sbjct: 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD 88
>gnl|CDD|178427 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 24.3 bits (53), Expect = 7.3
Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 11/48 (22%)
Query: 7 EAEDLLLSDLR-------SHLDLLLDASPTLKSASENRLVAVADFVFN 47
ED L S L LLD S L A+ A+ D F
Sbjct: 22 NIEDYLPSGSSIQEPSGKLLLRDLLDISGVLTEAAS----AIVDDSFT 65
>gnl|CDD|181858 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase;
Provisional.
Length = 148
Score = 24.1 bits (53), Expect = 7.7
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 66 DWEKAAEECKKWTKA 80
D +AA K W+ A
Sbjct: 122 DAREAAALTKSWSNA 136
>gnl|CDD|181577 PRK08898, PRK08898, coproporphyrinogen III oxidase; Provisional.
Length = 394
Score = 24.2 bits (53), Expect = 8.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 7 EAEDLLLSDLRSHLDLLLDASPTL 30
D LLSD+R+ L L DA TL
Sbjct: 90 AGLDRLLSDVRALLPLDPDAEITL 113
>gnl|CDD|177761 PLN00162, PLN00162, transport protein sec23; Provisional.
Length = 761
Score = 24.1 bits (53), Expect = 8.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 13 LSD-LRSHLDLLLDASPTLKSASE------NRLVA 40
LS+ +RSH DL DA+P K A + +LVA
Sbjct: 306 LSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVA 340
>gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 23.9 bits (52), Expect = 8.8
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 43 DFVFNLGIGNYN---KSTFKQRVDAQDWEKAAEECKKW 77
D V +GI YN +S + ++WEK +W
Sbjct: 105 DDVLKMGIDKYNEECRSIVTRYS--KEWEKTVTRTGRW 140
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.129 0.363
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,574,311
Number of extensions: 83568
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 21
Length of query: 102
Length of database: 5,994,473
Length adjustment: 69
Effective length of query: 33
Effective length of database: 4,503,521
Effective search space: 148616193
Effective search space used: 148616193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)